TCONS_00053905 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053905
Unique NameTCONS_00053905
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053905 ID=TCONS_00053905|Name=TCONS_00053905|organism=Clytia hemisphaerica|type=transcript|length=383bp
TCTAGCAAAGTCTATGCAAATGGATGTATCTATTTTACGAAGGTTTCTCT
TGAAACGTTTGCGAAGGAAAACCTCCAGCATTGTCGAAAAGGTATGATTC
TTCTTTTCTCACACTGCAATAGCTTCTTGTAACGAACAGACGCTCTTCTT
CGTTCTAACGTCAAAACAGAGAAAAAAGTGTTCTTCTTGTTGAATTTGGA
GCTTAAAATTTTGTTACCGTGTAacaaaaactggataaaaagaaGAAGTA
ACCAGAACTGAAGGTGCTGTCAAAAAACGAGACCAAAAGAAGAATTATTC
GTGGAGAAAAACAACATTTATgagcattttttaaacttttaacgtCAATT
CAGCAaagcagaaaaatcaaaacaaaagaagat
Run BLAST on NCBI

transcript from alignment at scaffold_235:187345..187727

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053905 ID=TCONS_00053905|Name=TCONS_00053905|organism=Clytia hemisphaerica|type=transcript|length=383bp|location=Sequence derived from alignment at scaffold_235:187345..187727 (Clytia hemisphaerica)
atcttcttttgttttgatttttctgcttTGCTGAATTGacgttaaaagtt
taaaaaatgctcATAAATGTTGTTTTTCTCCACGAATAATTCTTCTTTTG
GTCTCGTTTTTTGACAGCACCTTCAGTTCTGGTTACTTCttctttttatc
cagtttttgtTACACGGTAACAAAATTTTAAGCTCCAAATTCAACAAGAA
GAACACTTTTTTCTCTGTTTTGACGTTAGAACGAAGAAGAGCGTCTGTTC
GTTACAAGAAGCTATTGCAGTGTGAGAAAAGAAGAATCATACCTTTTCGA
CAATGCTGGAGGTTTTCCTTCGCAAACGTTTCAAGAGAAACCTTCGTAAA
ATAGATACATCCATTTGCATAGACTTTGCTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034032XLOC_034032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053905-exon-scaffold_235-1491911889:187345..187727TCONS_00053905-exon-scaffold_235-1491911889:187345..187727Clytia hemisphaericaexon
TCONS_00053905-exon-scaffold_235-1510915933:187345..187727TCONS_00053905-exon-scaffold_235-1510915933:187345..187727Clytia hemisphaericaexon
TCONS_00053905-exon-scaffold_235-1575043694:187345..187727TCONS_00053905-exon-scaffold_235-1575043694:187345..187727Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_235supercontigscaffold_235:187345..187727 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22337	0.994149	0.923442	0.903444	4.94935	5.86656	0.524279	0.981647	1.37455	1.7026	1.85916	0	0.406813	0	0.115778	0.248496	0.306127	0.156885	0.86698	0.226808	0.788549	0	0.701346	0.425084	2.84587	1.75837	0.838742	0.298376	0.678923	0.691715
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053905 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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