TCONS_00053903 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053903
Unique NameTCONS_00053903
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053903 ID=TCONS_00053903|Name=TCONS_00053903|organism=Clytia hemisphaerica|type=transcript|length=301bp
TGACATTCCTGAAGCCATTCTGAATAGCGAAACAAACCTCTTTGCTGGCG
ACACCTGTCTTCTCTCTTCCGATTCGAATCTAAATTCGCTTGAGACGAAA
GTGAATTCTGACTTAATCAGATTCTCCTCTTGGCTTCGTGCCAACAAAAT
CTCTCTTAATACTACAAAAACTGAAGTTATCCTGTTTAGAAGTAAAAATA
AACCTGTACCATATACCATGAATCTCAATCTTGATGGGCATGTCTTGAAA
TTTTCGAAATGTGTCAAATATCTTGGTCTTTTTCTCGATGAATGTCTAGC
G
Run BLAST on NCBI

protein sequence of TCONS_00053903-protein

>TCONS_00053903-protein ID=TCONS_00053903-protein|Name=TCONS_00053903-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
DIPEAILNSETNLFAGDTCLLSSDSNLNSLETKVNSDLIRFSSWLRANKI
SLNTTKTEVILFRSKNKPVPYTMNLNLDGHVLKFSKCVKYLGLFLDECLA
Run BLAST on NCBI

transcript from alignment at scaffold_235:183709..184009

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053903 ID=TCONS_00053903|Name=TCONS_00053903|organism=Clytia hemisphaerica|type=transcript|length=301bp|location=Sequence derived from alignment at scaffold_235:183709..184009 (Clytia hemisphaerica)
CGCTAGACATTCATCGAGAAAAAGACCAAGATATTTGACACATTTCGAAA
ATTTCAAGACATGCCCATCAAGATTGAGATTCATGGTATATGGTACAGGT
TTATTTTTACTTCTAAACAGGATAACTTCAGTTTTTGTAGTATTAAGAGA
GATTTTGTTGGCACGAAGCCAAGAGGAGAATCTGATTAAGTCAGAATTCA
CTTTCGTCTCAAGCGAATTTAGATTCGAATCGGAAGAGAGAAGACAGGTG
TCGCCAGCAAAGAGGTTTGTTTCGCTATTCAGAATGGCTTCAGGAATGTC
A

Coding sequence (CDS) from alignment at scaffold_235:183709..184009

>TCONS_00053903 ID=TCONS_00053903|Name=TCONS_00053903|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_235:183709..184009 (Clytia hemisphaerica)
CGCTAGACATTCATCGAGAAAAAGACCAAGATATTTGACACATTTCGAAA
ATTTCAAGACATGCCCATCAAGATTGAGATTCATGGTATATGGTACAGGT
TTATTTTTACTTCTAAACAGGATAACTTCAGTTTTTGTAGTATTAAGAGA
GATTTTGTTGGCACGAAGCCAAGAGGAGAATCTGATTAAGTCAGAATTCA
CTTTCGTCTCAAGCGAATTTAGATTCGAATCGGAAGAGAGAAGACAGGTG
TCGCCAGCAAAGAGGTTTGTTTCGCTATTCAGAATGGCTTCAGGAATGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034030XLOC_034030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053903-exon-scaffold_235-1491911889:183709..184009TCONS_00053903-exon-scaffold_235-1491911889:183709..184009Clytia hemisphaericaexon
TCONS_00053903-exon-scaffold_235-1510915933:183709..184009TCONS_00053903-exon-scaffold_235-1510915933:183709..184009Clytia hemisphaericaexon
TCONS_00053903-exon-scaffold_235-1575043694:183709..184009TCONS_00053903-exon-scaffold_235-1575043694:183709..184009Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053903-proteinTCONS_00053903-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_235supercontigscaffold_235:183709..184009 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.375581	0.436085	0	1.71423	0.914707	1.09707	0	0	0	0	0.513014	0.512301	0	0	0.234699	2.31304	0	0	0	0	0.544907	0.441604	0	1.65407	1.10716	0	0	0.427485	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053903 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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