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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053873 ID=TCONS_00053873|Name=TCONS_00053873|organism=Clytia hemisphaerica|type=transcript|length=2412bp
atccaaGTATTTTTTCCTAAACAATATTTTGCTACGTACAATATATATAA
AAATCTATCTACAATGTTTCATAATAATATGATATATACATGTGTGTTAt
caagaaaaagtaaattttatttttaaatactagGTAGTAACTGCATCCTT
TAGGAAAGGGTTGTGTAAACTATGGGTTTTTTCGTTGTTTACattctttg
aaaatcaaaacagatACAAAAACACTTTATTTCAATCTGATGATATGAAA
GTTTGCAATATCAGTATCAGAACAGCACAACTCTTAGTTttgattttgag
tatttttacaTTAGCTAAATATTATTAATAAGATAACATAACAATAAGAA
TAAACATCAAACAAATATATAATACAATACAACACAATACTCTGATATGA
TacgaaaaatctaaaacaataCAGAAATTAAACTTCTTGCCTCACTTCAT
AAAATGTTTATTGCAAGTTTAATTATTTACCTTTAATTGGGGTTAATTAA
GGATAACTTTCAAAGCTTTCAAACAGCAGACTTCTCTGGTCTGCAAGAta
tgaatagaccttttcttaatcacaatgtttgttttttctataaaactcca
gcatcaaaaTAACACTGATATATAATTAATTAAAACCAAGGACCAGAAAA
TACTGTGGTTAAAAGGTAATGAAAGTTACCCCAAGAGTAACGGTAATACC
AGCTGTAATTAAGAAATGTAGCAAAGTTTAAAATAATATGTCAATATATT
TCCTAATGGAGATAAAATTGACACAATTCCGCATATGAATTTTATAAAAC
TAAAGTACATTTTGATCAGAAATTTATCACAAATACAGATGATAAAAATC
GTTTCAAAATCAGGTTTTgatcaaaattactttaaaCAAAATTAATATGT
ATATATTGGACAGTATGATCCCTGGGTTCTTAATACTATCAATTACTTTT
TTTAAGATATGTCTAAtctcatttttaatttatttctatATTGGCTTTAA
AATTTGTAATATCGACATTCCCCATCAATTTTGATACTCTTCTTAAGAGA
TATACATAATATGAAAGTTAGAATCACTGACTGAAAAAGGATTTTTCCTC
TCcaaccactaagcaaagaaaaaacttttcaccTTCTACCGtgagttggt
ctaatatcgacatccctcgtctaattagacacccttctttagaaaaagga
ataatatgagagcttgaatcactgattgaaaaaggattatttctctctga
ccactaagcaagcAAAGAgcaacagtttcaacctttctataaatttcagc
tgaaaaaaaggtgtcggaattagaggaggggtttcgacattagaccaaga
gTTACGGTATTATTTTCAGCTCTAAAAAAGGCTGTCCGACTTAGATGAGG
GATGTGGACACTACCAAGTTAGTTACGATAGTATATCTTTTTTAAAGACA
GTCATGTAAAAGCAATGTAAAACATCCAgatatttagaaatttttacaaA
CAAAGCATTTCATCAACAGCATGCTATAAAAATTTCCAGATAGTCAACAG
AGCATGTAGAAACAAACTCAAAGCACGTCACCCATATAATGAAAGCAACA
ATTATGTTGTCTTTGCTAAGCAAGAAAATTATTTACTTCTGCTCTTTCAA
ATAGATTTTTACCTAATAAAACAAATgtacaaattcaactttttacgCGC
ATGGTATATAATGGTATATATCCATCCCAgtataaaaaaatgaaagctTT
ATTGCAATAAAGTTCTTGTGGAATCACTTAGTCAAGGAAAAGTTGAGGAA
AACTATTTTTTGTAGAAATTAAACGAGTCGGTAGGTATTGTAAAAGTGTC
TGGTCGGTATGGCAAAAAAGATGAAACTTTACTTCCAAAACTTTTCCCAT
CATCATCAATCTTCATCATCTCCACCAATTAGAAAACTGATTCTTCTTTG
CCTGGTGGCATTACCCTCTACACTATTTGAACGTTGAAATTTTCTTGGGG
ACAGTGGAAAATTTGGTGCAGAACCAACATGTTGAAAGTCAGAACAGGAA
GATGGCGACGAGGATGATTGAGTGGTTGTTGGAGAGTTTATTGGAATTGC
TGCTGATATTGTTGTGGTAGTAGGACATGAAGATCCAAGTAAGTTTGAAC
TCGAAGACCCTTTGATCATTTGTGGTtttgttttccaaatcagcATTGGC
ATACTGTTAGTTTTGgacattttaaattaaaaaagctCCTTTTTTTGCAC
GTGTGATGTTTCTTTTGTCTGGTCCAGGTCGCTTCTGTCACCTTTCTGCA
CCTTTCAATTTTATAGCATGTTTACAAAAATCGGCAGCCGTAATAAAATT
GATTAGAAGCTCAAAATGGTAGACAGAGCTATGACCGGTCATTTGGCCTG
AAAACGTTGTTT Run BLAST on NCBI protein sequence of TCONS_00053873-protein >TCONS_00053873-protein ID=TCONS_00053873-protein|Name=TCONS_00053873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MSKTNSMPMLIWKTKPQMIKGSSSSNLLGSSCPTTTTISAAIPINSPTTT
QSSSSPSSCSDFQHVGSAPNFPLSPRKFQRSNSVEGNATRQRRISFLIGG
DDED Run BLAST on NCBI transcript from alignment at scaffold_234:530161..532572 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053873 ID=TCONS_00053873|Name=TCONS_00053873|organism=Clytia hemisphaerica|type=transcript|length=2412bp|location=Sequence derived from alignment at scaffold_234:530161..532572 (Clytia hemisphaerica)
AAACAACGTTTTCAGGCCAAATGACCGGTCATAGCTCTGTCTACCATTTT
GAGCTTCTAATCAATTTTATTACGGCTGCCGATTTTTGTAAACATGCTAT
AAAATTGAAAGGTGCAGAAAGGTGACAGAAGCGACCTGGACCAGACAAAA
GAAACATCACACGTGCAAAAAAAGGagcttttttaatttaaaatgtcCAA
AACTAACAGTATGCCAATgctgatttggaaaacaaaACCACAAATGATCA
AAGGGTCTTCGAGTTCAAACTTACTTGGATCTTCATGTCCTACTACCACA
ACAATATCAGCAGCAATTCCAATAAACTCTCCAACAACCACTCAATCATC
CTCGTCGCCATCTTCCTGTTCTGACTTTCAACATGTTGGTTCTGCACCAA
ATTTTCCACTGTCCCCAAGAAAATTTCAACGTTCAAATAGTGTAGAGGGT
AATGCCACCAGGCAAAGAAGAATCAGTTTTCTAATTGGTGGAGATGATGA
AGATTGATGATGATGGGAAAAGTTTTGGAAGTAAAGTTTCATCTTTTTTG
CCATACCGACCAGACACTTTTACAATACCTACCGACTCGTTTAATTTCTA
CAAAAAATAGTTTTCCTCAACTTTTCCTTGACTAAGTGATTCCACAAGAA
CTTTATTGCAATAAagctttcatttttttatacTGGGATGGATATATACC
ATTATATACCATGCGcgtaaaaagttgaatttgtacATTTGTTTTATTAG
GTAAAAATCTATTTGAAAGAGCAGAAGTAAATAATTTTCTTGCTTAGCAA
AGACAACATAATTGTTGCTTTCATTATATGGGTGACGTGCTTTGAGTTTG
TTTCTACATGCTCTGTTGACTATCTGGAAATTTTTATAGCATGCTGTTGA
TGAAATGCTTTGTttgtaaaaatttctaaatatcTGGATGTTTTACATTG
CTTTTACATGACTGTCTTTAAAAAAGATATACTATCGTAACTAACTTGGT
AGTGTCCACATCCCTCATCTAAGTCGGACAGCCTTTTTTAGAGCTGAAAA
TAATACCGTAActcttggtctaatgtcgaaacccctcctctaattccgac
acctttttttcagctgaaatttatagaaaggttgaaactgttgcTCTTTg
cttgcttagtggtcagagagaaataatcctttttcaatcagtgattcaag
ctctcatattattcctttttctaaagaagggtgtctaattagacgaggga
tgtcgatattagaccaactcaCGGTAGAAggtgaaaagttttttctttgc
ttagtggttgGAGAGGAAAAATCCTTTTTCAGTCAGTGATTCTAACTTTC
ATATTATGTATATCTCTTAAGAAGAGTATCAAAATTGATGGGGAATGTCG
ATATTACAAATTTTAAAGCCAATatagaaataaattaaaaatgagaTTAG
ACATATCTTAAAAAAAGTAATTGATAGTATTAAGAACCCAGGGATCATAC
TGTCCAATATATACATATTAATTTTGtttaaagtaattttgatcAAAACC
TGATTTTGAAACGATTTTTATCATCTGTATTTGTGATAAATTTCTGATCA
AAATGTACTTTAGTTTTATAAAATTCATATGCGGAATTGTGTCAATTTTA
TCTCCATTAGGAAATATATTGACATATTATTTTAAACTTTGCTACATTTC
TTAATTACAGCTGGTATTACCGTTACTCTTGGGGTAACTTTCATTACCTT
TTAACCACAGTATTTTCTGGTCCTTGGTTTTAATTAATTATATATCAGTG
TTAttttgatgctggagttttatagaaaaaacaaacattgtgattaagaa
aaggtctattcataTCTTGCAGACCAGAGAAGTCTGCTGTTTGAAAGCTT
TGAAAGTTATCCTTAATTAACCCCAATTAAAGGTAAATAATTAAACTTGC
AATAAACATTTTATGAAGTGAGGCAAGAAGTTTAATTTCTGtattgtttt
agatttttcgtATCATATCAGAGTATTGTGTTGTATTGTATTATATATTT
GTTTGATGTTTATTCTTATTGTTATGTTATCTTATTAATAATATTTAGCT
AAtgtaaaaatactcaaaatcaaAACTAAGAGTTGTGCTGTTCTGATACT
GATATTGCAAACTTTCATATCATCAGATTGAAATAAAGTGTTTTTGTatc
tgttttgattttcaaagaatGTAAACAACGAAAAAACCCATAGTTTACAC
AACCCTTTCCTAAAGGATGCAGTTACTACctagtatttaaaaataaaatt
tactttttcttgaTAACACACATGTATATATCATATTATTATGAAACATT
GTAGATAGATTTTTATATATATTGTACGTAGCAAAATATTGTTTAGGAAA
AAATACttggat Coding sequence (CDS) from alignment at scaffold_234:530161..532572 >TCONS_00053873 ID=TCONS_00053873|Name=TCONS_00053873|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_234:530161..532572 (Clytia hemisphaerica)
atgtcCAAAACTAACAGTATGCCAATgctgatttggaaaacaaaACCACA
AATGATCAAAGGGTCTTCGAGTTCAAACTTACTTGGATCTTCATGTCCTA
CTACCACAACAATATCAGCAGCAATTCCAATAAACTCTCCAACAACCACT
CAATCATCCTCGTCGCCATCTTCCTGTTCTGACTTTCAACATGTTGGTTC
TGCACCAAATTTTCCACTGTCCCCAAGAAAATTTCAACGTTCAAATAGTG
TAGAGGGTAATGCCACCAGGCAAAGAAGAATCAGTTTTCTAATTGGTGGA
GATGATGAAGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053873-exon-scaffold_234-1491911889:530161..532572 | TCONS_00053873-exon-scaffold_234-1491911889:530161..532572 | Clytia hemisphaerica | exon |
| TCONS_00053873-exon-scaffold_234-1510915933:530161..532572 | TCONS_00053873-exon-scaffold_234-1510915933:530161..532572 | Clytia hemisphaerica | exon |
| TCONS_00053873-exon-scaffold_234-1575043694:530161..532572 | TCONS_00053873-exon-scaffold_234-1575043694:530161..532572 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_234 | supercontig | scaffold_234:530161..532572 . |
Blast
The following BLAST results are available for this feature:
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