TCONS_00053871 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053871
Unique NameTCONS_00053871
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length321

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053871 ID=TCONS_00053871|Name=TCONS_00053871|organism=Clytia hemisphaerica|type=transcript|length=321bp
aggGAAAGGAAAAATATATCCTTTAAAGTAGATTTaatgagaaaaataat
cttatgatctttttttgatgaaatttgaatcccaaaaatttgtcaatata
aaaaagataaGGTCATCAAGTACTTGTTTTGATAAACTTGGCATTTGACC
ATAAAGGTTGTTGTATTAAATCTCACCAATCATCATACAAGATAAATATA
CAAACCTCTTAAAACGCAAAACATAGAAAGGAGTGCGAGAAAACGTCTTT
AGTCTTTACACATTGTTGGATAGATTTGAATTTGCACAACGAATTTATTT
TCTGAAGAGACCGAGTCACTT
Run BLAST on NCBI

transcript from alignment at scaffold_234:483517..483837

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053871 ID=TCONS_00053871|Name=TCONS_00053871|organism=Clytia hemisphaerica|type=transcript|length=321bp|location=Sequence derived from alignment at scaffold_234:483517..483837 (Clytia hemisphaerica)
AAGTGACTCGGTCTCTTCAGAAAATAAATTCGTTGTGCAAATTCAAATCT
ATCCAACAATGTGTAAAGACTAAAGACGTTTTCTCGCACTCCTTTCTATG
TTTTGCGTTTTAAGAGGTTTGTATATTTATCTTGTATGATGATTGGTGAG
ATTTAATACAACAACCTTTATGGTCAAATGCCAAGTTTATCAAAACAAGT
ACTTGATGACCttatcttttttatattgacaaatttttgggattcaaatt
tcatcaaaaaaagatcataagattatttttctcattAAATCTACTTTAAA
GGATATATTTTTCCTTTCcct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034000XLOC_034000Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053871-exon-scaffold_234-1491911889:483517..483837TCONS_00053871-exon-scaffold_234-1491911889:483517..483837Clytia hemisphaericaexon
TCONS_00053871-exon-scaffold_234-1510915933:483517..483837TCONS_00053871-exon-scaffold_234-1510915933:483517..483837Clytia hemisphaericaexon
TCONS_00053871-exon-scaffold_234-1575043694:483517..483837TCONS_00053871-exon-scaffold_234-1575043694:483517..483837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:483517..483837 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.35862	0	0.42713	0	6.10813	7.24325	2.93594	2.64483	0.320892	1.26565	1.05324	1.0938	0.179851	0.386015	8.79746	5.36153	0.673386	1.4093	26.6424	18.8207	2.54211	3.96196	5.44097	13.6573	0	0	0.351547	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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