TCONS_00053867 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053867
Unique NameTCONS_00053867
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length562

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053867 ID=TCONS_00053867|Name=TCONS_00053867|organism=Clytia hemisphaerica|type=transcript|length=562bp
CAACGAGATAATTTTGTCATTTGTTGGTGTTTTCCATATGTTTTGTAGTA
TATTTTGAAGTGTGCTTTACTGTCAAACCATTCTTCACACTAAATAATTC
TCCATTTTAGAAAAAGTACAAAATGCATGGAAAACGTCTTGGTTTGTTGT
TGATGCTTGGGTTATTCTTTAATTCAGGTATGATTTTTCGTCACTCAATT
TTTCTGCCTTAATCTCTACATTCACAATTTATCTTTATATAATTTGAGTC
AGTTTTAGTTTAAAACGATTATAAGGTATTTAGTGGTTGATATTTTTAGT
TTATGGGAACTTAAATTTCAGACGTTTTTAGATCGGTTTCAAGACAGTTT
TTTTACTTTGATCAAAATACAAATATATATGATTACAATGTGTAAGCTTG
TTTTTGGTCACCATCAATTCAAATTGGAAGGAGTGCTTATGAGCTCAGAT
TTCTCTTTGGCTATGTAGAAAGCAGAATATAGATGTGACATTATTTATAC
CTTAACTTGTCTAATATCGACACcgcaaaaatatatacacttaAGGTATA
TATCGTTTGGGA
Run BLAST on NCBI

transcript from alignment at scaffold_234:402379..402940

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053867 ID=TCONS_00053867|Name=TCONS_00053867|organism=Clytia hemisphaerica|type=transcript|length=562bp|location=Sequence derived from alignment at scaffold_234:402379..402940 (Clytia hemisphaerica)
TCCCAAACGATATATACCTtaagtgtatatatttttgcgGTGTCGATATT
AGACAAGTTAAGGTATAAATAATGTCACATCTATATTCTGCTTTCTACAT
AGCCAAAGAGAAATCTGAGCTCATAAGCACTCCTTCCAATTTGAATTGAT
GGTGACCAAAAACAAGCTTACACATTGTAATCATATATATTTGTATTTTG
ATCAAAGTAAAAAAACTGTCTTGAAACCGATCTAAAAACGTCTGAAATTT
AAGTTCCCATAAACTAAAAATATCAACCACTAAATACCTTATAATCGTTT
TAAACTAAAACTGACTCAAATTATATAAAGATAAATTGTGAATGTAGAGA
TTAAGGCAGAAAAATTGAGTGACGAAAAATCATACCTGAATTAAAGAATA
ACCCAAGCATCAACAACAAACCAAGACGTTTTCCATGCATTTTGTACTTT
TTCTAAAATGGAGAATTATTTAGTGTGAAGAATGGTTTGACAGTAAAGCA
CACTTCAAAATATACTACAAAACATATGGAAAACACCAACAAATGACAAA
ATTATCTCGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033996XLOC_033996Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053867-exon-scaffold_234-1491911889:402379..402940TCONS_00053867-exon-scaffold_234-1491911889:402379..402940Clytia hemisphaericaexon
TCONS_00053867-exon-scaffold_234-1510915933:402379..402940TCONS_00053867-exon-scaffold_234-1510915933:402379..402940Clytia hemisphaericaexon
TCONS_00053867-exon-scaffold_234-1575043694:402379..402940TCONS_00053867-exon-scaffold_234-1575043694:402379..402940Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:402379..402940 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.502518	0.29402	1.25175	0.779316	0	0	0.129213	0.241936	5.25093	6.39922	4.58206	4.14996	4.67892	4.58144	2.68225	3.49091	3.92328	4.40789	3.84615	4.9191	6.89925	6.39864	2.53518	4.29539	0	0.0963037	11.9895	7.35374	2.00792	1.70479
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053867 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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