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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053855 ID=TCONS_00053855|Name=TCONS_00053855|organism=Clytia hemisphaerica|type=transcript|length=562bp
TGCTTTCGTACCTTACAACTCTTCCGATTCATTTATTGAGATTCAATTGA
AATTCCCGATGCTCCTTGGTCAAGAGAATGTCACCAAGATATACGTCAGT
AAATATGGATTCGTTTCCTTGAACAAAAAACCTAAAGAAGATATTGTATG
GTTTCCGTTTAATCATTCCTCAATTATATACGGATATGTCACGGATCTGC
CCGGTAACATTTATATCCAACAATCAAAGGATCCGTTCCTTCTAGCTAAT
GCTACGAAACTTCTATTGCGAACTAAAGATCAAATTTCCAAAGACAAACC
GTTAACAAATTTACTGATAATTACATGGTTCACGCCCGAGAGGGACGGAA
AAGATCCCGCCCATTTGAAagcaaatgattttcaaattgtCTTTGCTTAC
AATGAAGATGCAACTTGGCTTTTTCTGTTATATCAGCGGTTAGATTCTAT
CCTTGGTCAAATTGGAATTAATGTACCTGGATGTTACGTTGCACAACCGT
ATAAGCATATAGAGAGCCGTTATATTTTTGCTAAGAGTGAGCTCACAAAG
CAATGGTCCAAT Run BLAST on NCBI protein sequence of TCONS_00053855-protein >TCONS_00053855-protein ID=TCONS_00053855-protein|Name=TCONS_00053855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
AFVPYNSSDSFIEIQLKFPMLLGQENVTKIYVSKYGFVSLNKKPKEDIVW
FPFNHSSIIYGYVTDLPGNIYIQQSKDPFLLANATKLLLRTKDQISKDKP
LTNLLIITWFTPERDGKDPAHLKANDFQIVFAYNEDATWLFLLYQRLDSI
LGQIGINVPGCYVAQPYKHIESRYIFAKSELTKQWSN Run BLAST on NCBI transcript from alignment at scaffold_234:502494..503757- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053855 ID=TCONS_00053855|Name=TCONS_00053855|organism=Clytia hemisphaerica|type=transcript|length=1264bp|location=Sequence derived from alignment at scaffold_234:502494..503757- (Clytia hemisphaerica)
TGCTTTCGTACCTTACAACTCTTCCGATTCATTTATTGAGATTCAATTGA
AATTCCCGATGCTCCTTGGTCAAGAGAATGTCACCAAGATATACGTAAAT
AGATTTTACTCTTTTTCCTTCGTTATGAATGATAATTTTTTTGAAGCGAT
AAACGTATTATTGACTAGAACCTCATTCGGGCTAGAATGATATCACGTGG
GAATAGTGAGCGTATGAGCGTATGAGCGAAGTAAGCGTAGCAAGAAAATC
TGTCGGCGGAAGTGGCTGAAATCAGCACCTTCTCACAAAGGTTTCCTGGA
CTAGCGTTTCCTCCCACGCAGTTCATATTTCAGCAAACGACTGCCACCCT
AATGTTCTCGCCTTCCGACATGAGTAATTAACAAACTAGTTTGCCGAGAT
ACACCTCCAAAGAATTATTGGGAAAAACCGTTATTTTTCGTGCACTGTCA
GAGATGAAAAGTGTGTGAAAGGTTATCATAGTTTCTTTAACATACAGTGT
GTCCCGAAAAGAGCGGCTAAATCTTTATGTTAAAAAAAATCCTCAAAACT
CAATATCTAAACTGGGTTTAGAATAATAGAAATAAGATTACAATTTTCTC
TGTAATCAATAGATATTCAATTCAATTTCCAAGATGATTGAAGAGGTGTT
TGACGGGTTTGAGAACATCAAAATATACAAGTCATAAAATTTTGCATAAA
TTATGAGGATTTCACTTTATATAAAAAATGTTCCGCTTTTTTTTTGGGAC
ACACTGTTCTTATTACTAATATGAATCACACGTTTGTATCTTTCAGGTCA
GTAAATATGGATTCGTTTCCTTGAACAAAAAACCTAAAGAAGATATTGTA
TGGTTTCCGTTTAATCATTCCTCAATTATATACGGATATGTCACGGATCT
GCCCGGTAACATTTATATCCAACAATCAAAGGATCCGTTCCTTCTAGCTA
ATGCTACGAAACTTCTATTGCGAACTAAAGATCAAATTTCCAAAGACAAA
CCGTTAACAAATTTACTGATAATTACATGGTTCACGCCCGAGAGGGACGG
AAAAGATCCCGCCCATTTGAAAGCAAATGATTTTCAAATTGTCTTTGCTT
ACAATGAAGATGCAACTTGGCTTTTTCTGTTATATCAGCGGTTAGATTCT
ATCCTTGGTCAAATTGGAATTAATGTACCTGGATGTTACGTTGCACAACC
GTATAAGCATATAGAGAGCCGTTATATTTTTGCTAAGAGTGAGCTCACAA
AGCAATGGTCCAAT Coding sequence (CDS) from alignment at scaffold_234:502494..503757- >TCONS_00053855 ID=TCONS_00053855|Name=TCONS_00053855|organism=Clytia hemisphaerica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_234:502494..503757- (Clytia hemisphaerica)
GTCAGTAAATATGGATTCGTTTCCTTGAACAAAAAACCTAAAGAAGATAT
TGTATGGTTTCCGTTTAATCATTCCTCAATTATATACGGATATGTCACGG
ATCTGCCCGGTAACATTTATATCCAACAATCAAAGGATCCGTTCCTTCTA
GCTAATGCTACGAAACTTCTATTGCGAACTAAAGATCAAATTTCCAAAGA
CAAACCGTTAACAAATTTACTGATAATTACATGGTTCACGCCCGAGAGGG
ACGGAAAAGATCCCGCCCATTTGAAAGCAAATGATTTTCAAATTGTCTTT
GCTTACAATGAAGATGCAACTTGGCTTTTTCTGTTATATCAGCGGTTAGA
TTCTATCCTTGGTCAAATTGGAATTAATGTACCTGGATGTTACGTTGCAC
AACCGTATAAGCATATAGAGAGCCGTTATATTTTTGCTAAGAGTGAGCTC
ACAAAGCAATGGTCCAATGCTTTCGTACCTTACAACTCTTCCGATTCATT
TATTGAGATTCAATTGAAATTCCCGATGCTCCTTGGTCAAGAGAATGTCA
CCAAGATATACGTCAGTAAATATGGATTCGTTTCCTTGAACAAAAAACCT
AAAGAAGATATTGTATGGTTTCCGTTTAATCATTCCTCAATTATATACGG
ATATGTCACGGATCTGCCCGGTAACATTTATATCCAACAATCAAAGGATC
CGTTCCTTCTAGCTAATGCTACGAAACTTCTATTGCGAACTAAAGATCAA
ATTTCCAAAGACAAACCGTTAACAAATTTACTGATAATTACATGGTTCAC
GCCCGAGAGGGACGGAAAAGATCCCGCCCATTTGAAAGCAAATGATTTTC
AAATTGTCTTTGCTTACAATGAAGATGCAACTTGGCTTTTTCTGTTATAT
CAGCGGTTAGATTCTATCCTTGGTCAAATTGGAATTAATGTACCTGGATG
TTACGTTGCACAACCGTATAAGCATATAGAGAGCCGTTATATTTTTGCTA
AGAGTGAGCTCACAAAGCAATGGTCCAATGCTTTCGTACCTTACAACTCT
TCCGATTCATTTATTGAGATTCAATTGAAATTCCCGATGCTCCTTGGTCA
AGAGAATGTCACCAAGATATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053855-exon-scaffold_234-1575043694:503664..503757 | TCONS_00053855-exon-scaffold_234-1575043694:503664..503757 | Clytia hemisphaerica | exon |
| TCONS_00053855-exon-scaffold_234-1575043694:502494..502961 | TCONS_00053855-exon-scaffold_234-1575043694:502494..502961 | Clytia hemisphaerica | exon |
| TCONS_00053855-exon-scaffold_234-1510915933:503664..503757 | TCONS_00053855-exon-scaffold_234-1510915933:503664..503757 | Clytia hemisphaerica | exon |
| TCONS_00053855-exon-scaffold_234-1510915933:502494..502961 | TCONS_00053855-exon-scaffold_234-1510915933:502494..502961 | Clytia hemisphaerica | exon |
| TCONS_00053855-exon-scaffold_234-1491911889:503664..503757 | TCONS_00053855-exon-scaffold_234-1491911889:503664..503757 | Clytia hemisphaerica | exon |
| TCONS_00053855-exon-scaffold_234-1491911889:502494..502961 | TCONS_00053855-exon-scaffold_234-1491911889:502494..502961 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_234 | supercontig | scaffold_234:502494..503757 - |
Blast
The following BLAST results are available for this feature:
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