|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053852 ID=TCONS_00053852|Name=TCONS_00053852|organism=Clytia hemisphaerica|type=transcript|length=666bp
TTTTAGCTTTAGAAAATTATTACAAGCCAATAGGAAAATGGGAATGACAG
AAAGTACTCGAATTCGCTTCTTTCTTTTGCACCTCATACTGACCATGGCA
ACTTTCACTTTGGTTTTATCCAGCACTGTTAGTGATTACTGGTCCATCTT
CAAATATGGGTTTCATGGCTTGTTCAAAGAATGTCATCTCATTGATGCCT
GCAATTCGAAGACACACTCTAAAGCTGTATACCGATTGGTCCAACTCTTG
CAAGTCTTAAGTGTCGTTTCAATGTTGATTGCTGCCGTCTACACTTTCAT
TTCACTGCTTCTACGACAGTacatcaaaaacaaactttatgtCTTGGCTT
TGTTCTACGGAATTTCAGCAATGAGTGTTGTGGTCGTCACACCATTATAC
ATTATTTACCTACACCAACCTTTAAGACAAGACCAACTACGAGTTGGATG
GGCATTTTACGTTTTCGTATCGTCAGGGTTTACAAGCCTACTTGGTTTGG
TATTGTCATTGCTGATGTGTAAACAAGAAAGGAGCAGAGAATCGACACTT
GTTGTTATGGacgaaaaagaaatgaaatatcATGTCAAGTCAATTAATAa
aactaaaacttgaaaatgaaatttagaAATGTCGATTGATATGATAATTT
TTCATGAAGGCCAGGA Run BLAST on NCBI protein sequence of TCONS_00053852-protein >TCONS_00053852-protein ID=TCONS_00053852-protein|Name=TCONS_00053852-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
FSFRKLLQANRKMGMTESTRIRFFLLHLILTMATFTLVLSSTVSDYWSIF
KYGFHGLFKECHLIDACNSKTHSKAVYRLVQLLQVLSVVSMLIAAVYTFI
SLLLRQYIKNKLYVLALFYGISAMSVVVVTPLYIIYLHQPLRQDQLRVGW
AFYVFVSSGFTSLLGLVLSLLMCKQERSRESTLVVMDEKEMKYHVKSINK
TKT Run BLAST on NCBI transcript from alignment at scaffold_234:468635..470663- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053852 ID=TCONS_00053852|Name=TCONS_00053852|organism=Clytia hemisphaerica|type=transcript|length=2029bp|location=Sequence derived from alignment at scaffold_234:468635..470663- (Clytia hemisphaerica)
TTTTAGCTTTAGAAAATTATTACAAGCCAATAGGAAAATGGGAATGACAG
AAAGTACTCGAATTCGCTTCTTTCTTTTGCACCTCATACTGACCATGGCA
ACTTTCACTTTGGTTTTATCCAGCACTGTTAGTGATTACTGGTCCATCTT
CAAATATGGGTTTCATGGCTTGTTCAAAGAATGTCATCTCATTGATGCCT
GCAATTCGAAGACACACTCTAAAGGTAAGTCACAAGGTTTTAATAATAAT
AATAATAATAATAATAATAATAACGATATATTTCACAGTATCTCCAAAGT
TTTACAATTGGCTCTTCACCTGGAAATTGAGTATGATAAATATATATGTA
GCGTATAAAAAATATGATGTTCATTAAAAATACTGAGACCGGTTGTAACT
AGAGACTAGAAGGCTAAAAGTTTGTAAAGCCAAGTACGTTCGATCAAATA
CCGTTGTAGAGTAATATGAGTTTTTTATAAGAACATTAAACAATTTTGAA
GCCTTTGGATGTTCTTTGAGTTTTAAGATATTTTTGAGGATCGCCTAGTT
TTAGAAATTCCAGGAAAATTGCCTCGTGACTTCATAGACGCTGATGGTTT
ATAAGAAATCATGCTTAAGGTCCCAATTTTTAACGCCTAATTTATGACTT
TATTAATCTATGACCCCTTCTCACACAACCGGTGGAACCCGTGGAACCCC
TTCCCACTTTAAACTCATTGAAAATTTACCAAAATATCGTCCCCAGTGGA
AAATGATACTCCGATTTTCGTCCTCTACTATCTGGGAAAAAGGGCTGTTT
CGATAATTTACACGAAGCTTCTTTTACAATTATCTATCGATCATCCCGAT
TACCAGCAATAAATTGACATTTCAGTTTTCTATTTTAGCTGTATACCGAT
TGGTCCAACTCTTGCAAGTCTTAAGTGTCGTTTCAATGTTGATTGCTGCC
GTCTACACTTTCATTTCACTGCTTCTACGACAGTACATCAAAAACAAACT
TTATGTCTTGGCTTTGTTCTACGGAATTTCAGGTTAAAAAAACTGCTAGC
TACGTCAATTTTCACCCCATATCTCACTGACCTGTTTAGATTAATTAATA
GAGCATAGTTGACACTCTCCAATTCGACGTTTTTATGTTTGATACGCTCC
ATTATTCGATTATATTAAATATTGACGACGGTAAAAACTCTTTAATAAAC
GACGCTCCCTTATTTCATTAAATTGCGCTTAAAAATCGAATTAGAGAGCA
TCAACTGTAAAAGTCTAATATTTACCAGACTTACATGCTTCGAGCAGCCA
TATTCACGGTATGCGCTATTACAATGTCTTCTACACGGACCCAACATTTG
ATTGATTGAAAGTGACGTAAAATCAGTCAATACACTTTCAAGCTGTTGGG
TTCGTTGAAGTCATTGCAATGGTGCATATCATGGATAGAGATAATTGACC
TGGTATCTTATTTCACTTACTCTTTTTTGATCCAGGGAGTAGAGTTTGAC
ATTCATTATGCAGAAGTTGAACGAAATGGGGTATTGAGGAAAAGAGAACT
TGAAGAGCAAGGGATAAAAGACAATTTAAAATTCAGTTTATTGACAATCC
TTTGAGTTTTTAAAGTCAAACGGAATAAACCAGGCTCTCAAGTATTCTAA
AATTTTCAGGGGCTTAATAAGGTCCATTACAAATCTTACATAAAGGTGAC
TTAAGTTTTTCTATTCTTCTTTAATTTCCAGCAATGAGTGTTGTGGTCGT
CACACCATTATACATTATTTACCTACACCAACCTTTAAGACAAGACCAAC
TACGAGTTGGATGGGCATTTTACGTTTTCGTATCGTCAGGGTTTACAAGC
CTACTTGGTTTGGTATTGTCATTGCTGATGTGTAAACAAGAAAGGAGCAG
AGAATCGACACTTGTTGTTATGGACGAAAAAGAAATGAAATATCATGTCA
AGTCAATTAATAAAACTAAAACTTGAAAATGAAATTTAGAAATGTCGATT
GATATGATAATTTTTCATGAAGGCCAGGA Coding sequence (CDS) from alignment at scaffold_234:468635..470663- >TCONS_00053852 ID=TCONS_00053852|Name=TCONS_00053852|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at scaffold_234:468635..470663- (Clytia hemisphaerica)
CAATGAGTGTTGTGGTCGTCACACCATTATACATTATTTACCTACACCAA
CCTTTAAGACAAGACCAACTACGAGTTGGATGGGCATTTTACGTTTTCGT
ATCGTCAGGGTTTACAAGCCTACTTGGTTTGGTATTGTCATTGCTGATGT
GTAAACAAGAAAGGAGCAGAGAATCGACACTTGTTGTTATGGACGAAAAA
GAAATGAAATATCATGTCAAGTCAATTAATAAAACTAAAACTTGACTGTA
TACCGATTGGTCCAACTCTTGCAAGTCTTAAGTGTCGTTTCAATGTTGAT
TGCTGCCGTCTACACTTTCATTTCACTGCTTCTACGACAGTACATCAAAA
ACAAACTTTATGTCTTGGCTTTGTTCTACGGAATTTCAGTTTAGCTTTAG
AAAATTATTACAAGCCAATAGGAAAATGGGAATGACAGAAAGTACTCGAA
TTCGCTTCTTTCTTTTGCACCTCATACTGACCATGGCAACTTTCACTTTG
GTTTTATCCAGCACTGTTAGTGATTACTGGTCCATCTTCAAATATGGGTT
TCATGGCTTGTTCAAAGAATGTCATCTCATTGATGCCTGCAATTCGAAGA
CACACTCTAAAGCAATGAGTGTTGTGGTCGTCACACCATTATACATTATT
TACCTACACCAACCTTTAAGACAAGACCAACTACGAGTTGGATGGGCATT
TTACGTTTTCGTATCGTCAGGGTTTACAAGCCTACTTGGTTTGGTATTGT
CATTGCTGATGTGTAAACAAGAAAGGAGCAGAGAATCGACACTTGTTGTT
ATGGACGAAAAAGAAATGAAATATCATGTCAAGTCAATTAATAAAACTAA
AACTTGACTGTATACCGATTGGTCCAACTCTTGCAAGTCTTAAGTGTCGT
TTCAATGTTGATTGCTGCCGTCTACACTTTCATTTCACTGCTTCTACGAC
AGTACATCAAAAACAAACTTTATGTCTTGGCTTTGTTCTACGGAATTTCA
GTTTAGCTTTAGAAAATTATTACAAGCCAATAGGAAAATGGGAATGACAG
AAAGTACTCGAATTCGCTTCTTTCTTTTGCACCTCATACTGACCATGGCA
ACTTTCACTTTGGTTTTATCCAGCACTGTTAGTGATTACTGGTCCATCTT
CAAATATGGGTTTCATGGCTTGTTCAAAGAATGTCATCTCATTGATGCCT
GCAATTCGAAGACACACTCTAAAGCAATGAGTGTTGTGGTCGTCACACCA
TTATACATTATTTACCTACACCAACCTTTAAGACAAGACCAACTACGAGT
TGGATGGGCATTTTACGTTTTCGTATCGTCAGGGTTTACAAGCCTACTTG
GTTTGGTATTGTCATTGCTGATGTGTAAACAAGAAAGGAGCAGAGAATCG
ACACTTGTTGTTATGGACGAAAAAGAAATGAAATATCATGTCAAGTCAAT
TAATAAAACTAAAACTTGACTGTATACCGATTGGTCCAACTCTTGCAAGT
CTTAAGTGTCGTTTCAATGTTGATTGCTGCCGTCTACACTTTCATTTCAC
TGCTTCTACGACAGTACATCAAAAACAAACTTTATGTCTTGGCTTTGTTC
TACGGAATTTCAGTTTAGCTTTAGAAAATTATTACAAGCCAATAGGAAAA
TGGGAATGACAGAAAGTACTCGAATTCGCTTCTTTCTTTTGCACCTCATA
CTGACCATGGCAACTTTCACTTTGGTTTTATCCAGCACTGTTAGTGATTA
CTGGTCCATCTTCAAATATGGGTTTCATGGCTTGTTCAAAGAATGTCATC
TCATTGATGCCTGCAATTCGAAGACACACTCTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053852-exon-scaffold_234-1575043694:470440..470663 | TCONS_00053852-exon-scaffold_234-1575043694:470440..470663 | Clytia hemisphaerica | exon |
| TCONS_00053852-exon-scaffold_234-1575043694:469632..469775 | TCONS_00053852-exon-scaffold_234-1575043694:469632..469775 | Clytia hemisphaerica | exon |
| TCONS_00053852-exon-scaffold_234-1575043694:468635..468932 | TCONS_00053852-exon-scaffold_234-1575043694:468635..468932 | Clytia hemisphaerica | exon |
| TCONS_00053852-exon-scaffold_234-1510915933:470440..470663 | TCONS_00053852-exon-scaffold_234-1510915933:470440..470663 | Clytia hemisphaerica | exon |
| TCONS_00053852-exon-scaffold_234-1510915933:469632..469775 | TCONS_00053852-exon-scaffold_234-1510915933:469632..469775 | Clytia hemisphaerica | exon |
| TCONS_00053852-exon-scaffold_234-1510915933:468635..468932 | TCONS_00053852-exon-scaffold_234-1510915933:468635..468932 | Clytia hemisphaerica | exon |
| TCONS_00053852-exon-scaffold_234-1491911889:470440..470663 | TCONS_00053852-exon-scaffold_234-1491911889:470440..470663 | Clytia hemisphaerica | exon |
| TCONS_00053852-exon-scaffold_234-1491911889:469632..469775 | TCONS_00053852-exon-scaffold_234-1491911889:469632..469775 | Clytia hemisphaerica | exon |
| TCONS_00053852-exon-scaffold_234-1491911889:468635..468932 | TCONS_00053852-exon-scaffold_234-1491911889:468635..468932 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_234 | supercontig | scaffold_234:468635..470663 - |
Blast
The following BLAST results are available for this feature:
|
