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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053832 ID=TCONS_00053832|Name=TCONS_00053832|organism=Clytia hemisphaerica|type=transcript|length=1550bp
gtaaacaaagggaCTGGGTTCAAGTTCGAAAGAAAAACGGATACAATGTG
CAGCTCTGTATGCATAGTGTGACCATGCTCAAAGCCATGAACACACAGTA
TATCATTCTATGCTgcaatatttttcaagtcatgATAGCCATGATACCAT
GACAAATATAAAGTAGCTAAACGCACTTTAAAGCTACCATTCAAAACATA
TTAGAATCTAAGCTTGGTGGTGCTGTACAGATTTAGAttctaaaaagctt
taaaacagaTTGAGTAAAGGtgaagaatttcaaaatgaatcaCAACTTTA
TAATAACAGTTTTAATGATAGCCATATCTTTGTATGGAATTGAATGTGGC
AGCCGGTCGGCAGAAGATGTCTTCGGTGAAGAACATTTGAAGCAATTTCC
TTGTCATAAGAATTTGACTATTGAGACAAACCAAGTTTGGGAAGATGGAT
TTAAAGgTACATTAAAATTGCCAGTACTTCAAGATATGTCCAAAGATGTC
CTTGAAAACGATCCATTGTTCAAATATGGCCATGTCAACCTAACGTTTAA
CAAGAACGTCAGCGTCAGTAATATCACAGAAGAAAACCATGGCGCCCGAA
AGGAGGAGGACAATAAGAAGTTTAGTATTTTCACCAAATTGGACATCAAA
CCAATTGAATTAGCAGAAAAGGAAGTAGGGGATGTTTGGGATTTCGGCTT
CACCATTCATCATGATCAGGAAGAGAATAGTGAAAAGTTAAAAGGAAAAG
TTGGGATAACGGAAATTCAATTTGGAAATTATATTTGTCCGGAGCCCATT
AAAGCTGAAGCGTGAAGCCGATCAATAAACTGCTACTGATTGGTGTTATA
TTCAACCCGCTGACAGAACTCAGTCTGATGGATTACGAGCTGATATTTTC
CATTCCtatcaagaaaatcaaaatgtctGCCAAAGATTTGAAAACCAATG
GAAGTATCGAAAGTgccaagttttttttcaaaattttgaacattgaaaaa
atgaggaattttatttattttatatagTTCAGTANtttcaaaattttgaa
cattgaaaaaatgaggaatttaatttattttatatagttcagtatttatt
ttgatttctttatcaTACCTTTTGTTATTTTCCTTTATTGAAAAGTATTT
TCCAACCATCATGAAATCATGACATTGAGAGTTAATGAAAAGAATCATTT
GACGTACCTCTCCTACAATTTGCTTTACACAGaatttttaagggctctgg
ccatactttaatgggatacaTTTTacgtggggattaaatttcgcagttga
gctcatctgcaaaattttaagactttgtgggGACTTATTTTCGCAGATGG
CACTATTTTTCACAATTTGTTCCTTTTACTGCCAAATTCTATAtgttagc
gcttctttgatgccagtaaacatttaaaaagtagtTAATTTGGGTTTTAA
TTAAAAATATTCCTGGATAAGGCCTTTCTTAATGTCCATTAGGACTTGAT
TTCGCGGAATTTCGTGTATTTTGCATGAATAAATGCCTGATGTAGCCCAA Run BLAST on NCBI protein sequence of TCONS_00053832-protein >TCONS_00053832-protein ID=TCONS_00053832-protein|Name=TCONS_00053832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MNHNFIITVLMIAISLYGIECGSRSAEDVFGEEHLKQFPCHKNLTIETNQ
VWEDGFKGTLKLPVLQDMSKDVLENDPLFKYGHVNLTFNKNVSVSNITEE
NHGARKEEDNKKFSIFTKLDIKPIELAEKEVGDVWDFGFTIHHDQEENSE
KLKGKVGITEIQFGNYICPEPIKAEA Run BLAST on NCBI transcript from alignment at scaffold_234:217480..221248- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053832 ID=TCONS_00053832|Name=TCONS_00053832|organism=Clytia hemisphaerica|type=transcript|length=3769bp|location=Sequence derived from alignment at scaffold_234:217480..221248- (Clytia hemisphaerica)
GTAAACAAAGGGACTGGGTTCAAGTTCGAAAGAAAAACGGATACAATGTG
CAGCTCTGTATGCATAGTGTGACCATGCTCAAAGCCATGAACACACAGTA
TATCATTCTATGCTGCAATATTTTTCAAGTCATGATAGCCATGATACCAT
GACAAATATAAAGTAGCTAAACGCACTTTAAAGCTACCATTCAAAACATA
TTAGAATCTAAGCTTGGTGGTGCTGTACAGATTTAGATTCTAAAAAGCTT
TAAAACAGATTGAGTAAAGGTGAAGAATTTCAAAATGAATCACAACTTTA
TAATAACAGTTTTAATGATAGCCATATCTTTGTATGGAATTGAATGTGGC
AGCCGGTCGGCAGAAGATGTCTTCGGTGAAGAACATTTGAAGCAATTTCC
TTGTCATAAGAATTTGACTATTGAGACAAACCAAGTTTGGGAAGATGGAT
TTAAAGGTAGGACTACTGTTTCACGGAATAATTGTAGTTTCCTTCTTTTC
CNGTAGTTTCCTTCCTTTCAGTTTGACTTTATTTAAACTATTAGGCTTTG
TAGAAACATCTGTGAATCGACCCCTTTTTCACCCAATTTCTTTCATTTTC
CTAGTGCTTTTGACCGAAATTCGGATTTTAAATTTTTTGCGAAATGGCCA
AAATTAGTGATTATTAGTGTGAAATTTAATCCACTTAAGGTATATTTATG
TCTTTTCCCTGGGTGTCAAACGTATTTTTTTATTTACAGGTACATTAAAA
TTGCCAGTACTTCAAGATATGTCCAAAGATGTCCTTGAAAACGATCCATT
GTTCAAATATGGCCATGTCAACCTAACGTTTAACAAGAACGTCAGCGTCA
GTAATATCACAGAAGGTAAGAACTCAATCGCCGTAACATTTCTTCTTACT
TGATTTTTCTAAACACCCCTGTGTCACAGACCCGCTGAAGCCCCATCCCC
ACTTGAAAATTTAGCAAAAATTTCGTCCCCGGTGGGAAAAATACCCTGGA
GTTTCAGCCCCACTAAGAAATTGACTTTTATTCCCATTCGGAATTCATTG
TTTAGAAATCACGCACCAAAACTATCCTTACTGGATTTTTTAACCTTGAA
ACAATAGAATGTTTATCCCCATTGAGATTTCAATCGAAATTTTTTTCCCC
GCTGTAGGGAAAAGTTTCACCAGGGCTGTGAGACAGGGTTGTTTCTAAGA
ATGTCACGATAAAATACCAATTTTTTTTATTCATTCATTCACAATTAAAA
ACTTTTGCGTTAACAACTGCGAGGTGATTGCTTTCACACTTTATTCTGTA
AAAGTTCCTCTTCAATCGTTGCCATAAAAACAAAGCACATATATATAAGG
AAATCTTGATTGATTTTCTAGCGTCACTGTCTCTGACAACCCCTCCACAT
CCCCTCGCGTCAATTTGACCTTAGCCGTGGTTGACATCGATATGACTGGC
CCCTTAGATCTTCATCGAAAAATCCTTGAGCTTTTAGACAGCTCAAGAAT
TGTTTCCACGAACGGCCACTACGAACAGAACAGAACAAAATCATTCTACA
TTCTACATCTCTCAAAAGAAAAGTCATTTAAATAAATGGCCTAATTTTAT
ATCCTATTTTGGGCTATAGGTGTATTTTCCAAGCCCAGGCAATTACCCCC
CCCCCTAAAAAAAGATTTTTTTTGTAACTTTCCAGATTGGTATTTGGCTT
AGCGAACATAAAAGCCCCTAGTTTCATAATAATTTTGCAATCAATTTTAT
AATTCTTATCTCTTTTCCACAGAAAACCATGGCGCCCGAAAGGAGGAGGA
CAATAAGAAGTTTAGTATTTTCACCAAATTGGACATCAAACCAATTGAAT
TAGCAGAAAAGGAAGTAGGGGATGTTTGGGATTTCGGCTTCACCATTCAT
CATGATCAGGAAGAGAATAGTGAAAAGTTAAAAGGTATTATTTGTACAGC
CCCTTCTCGCAGACCTGGTAGGATTTTTTCAGCCAGTGGGGGTAAAAAAA
AGGACCAAAAATAGATGGGCATTGATATTCCCATGTTTTTCATGGCTGGG
GATTTGAATTGCATTGTTTTCGAACTATAATATTCAGTGGGGATGGAAAG
AATAGCACAATATTGAGATCGCTGGGGATGATATTTTGGCCAATTTTTCT
AGTGAGAAGGGTTCCCAGTGCTTTGGGTCTGTGGAAAAGGTTTTTATTTG
TACAGCTCAAGTCCGTGTTAATGAGCGAGAGAAGTCTATATAAGCAATAC
TTCAAATGTCACGGCGCAAATTAAAAGAAAAACTTTTTGTTAATCAAATA
CTACGCAAAATTAGAAAATATAAAAAATAGAAGAAATACTGCAGGAATAT
TATGCAAGCATTGATTTCCAAGCACCACGATCCATATCAGTATTTCCCAG
TCATAAGAACCATTAAACTTTTGCTCGGCTGTTCTTATTTTAAGGGCAGT
GCTTGGTACCAGATTTTTTACTTCTTTGACCTCCAAAAGGTCTGTAAAAT
TGAGTAATTCCATAGCATTGTTCTTAAATTGTTCTTATTTTTTGACGATT
TTAAGCCTAAGTATTCTTAGGTTACAATAGGACGTTTGAAGGGTAACAAT
CAATTCAGCATCTTCTTGGGGACTAGCAAACTAAGGGACTTTGTTGAACT
TTGGGGCCTTAATAAAAGTCATTTACATGTTTTTTATAAGCATACGAAAA
TTCGAAAAGAGGCTCGGAGATGCATAGTTTGACGGCTTAACAAAAATGCT
TATAAGGATGTTTTTATTCCTAACCACTTTTTAGGGGGATTCCGAAAATT
CGTAAAATCTCAGCTAAAAACAGCCAAAATCCGGAAAATACATTTTTCAT
AGGCTTATGCTCATTTGGAACCTCCATATCAGAGCCTATAGATATGCTTA
TAAGTCCAATGCTTATGAAAAGAAAAACATATACCTCACCTACCCTTTAA
AATTTATTTCTAGGAAAAGTTGGGATAACGGAAATTCAATTTGGAAATTA
TATTTGTCCGGAGCCCATTAAAGCTGAAGCGTGAAGCCGATCAATAAACT
GCTACTGATTGGTGTTATATTCAACCCGCTGACAGAACTCAGTCTGATGG
ATTACGAGCTGATATTTTCCATTCCTATCAAGAAAATCAAAATGTCTGCC
AAAGATTTGAAAACCAATGGAAGTATCGAAAGTGCCAAGTTTTTTTTCAA
AATTTTGAACATTGAAAAAATGAGGAATTTTATTTATTTTATATAGTTCA
GTANTTTCAAAATTTTGAACATTGAAAAAATGAGGAATTTAATTTATTTT
ATATAGTTCAGTATTTATTTTGATTTCTTTATCATACCTTTTGTTATTTT
CCTTTATTGAAAAGTATTTTCCAACCATCATGAAATCATGACATTGAGAG
TTAATGAAAAGAATCATTTGACGTACCTCTCCTACAATTTGCTTTACACA
GAATTTTTAAGGGCTCTGGCCATACTTTAATGGGATACATTTTACGTGGG
GATTAAATTTCGCAGTTGAGCTCATCTGCAAAATTTTAAGACTTTGTGGG
GACTTATTTTCGCAGATGGCACTATTTTTCACAATTTGTTCCTTTTACTG
CCAAATTCTATATGTTAGCGCTTCTTTGATGCCAGTAAACATTTAAAAAG
TAGTTAATTTGGGTTTTAATTAAAAATATTCCTGGATAAGGCCTTTCTTA
ATGTCCATTAGGACTTGATTTCGCGGAATTTCGTGTATTTTGCATGAATA
AATGCCTGATGTAGCCCAA Coding sequence (CDS) from alignment at scaffold_234:217480..221248- >TCONS_00053832 ID=TCONS_00053832|Name=TCONS_00053832|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_234:217480..221248- (Clytia hemisphaerica)
GAAAAGTTGGGATAACGGAAATTCAATTTGGAAATTATATTTGTCCGGAG
CCCATTAAAGCTGAAGCGTGAAAAACCATGGCGCCCGAAAGGAGGAGGAC
AATAAGAAGTTTAGTATTTTCACCAAATTGGACATCAAACCAATTGAATT
AGCAGAAAAGGAAGTAGGGGATGTTTGGGATTTCGGCTTCACCATTCATC
ATGATCAGGAAGAGAATAGTGAAAAGTTAAAAGGTACATTAAAATTGCCA
GTACTTCAAGATATGTCCAAAGATGTCCTTGAAAACGATCCATTGTTCAA
ATATGGCCATGTCAACCTAACGTTTAACAAGAACGTCAGCGTCAGTAATA
TCACAGAAGATGAATCACAACTTTATAATAACAGTTTTAATGATAGCCAT
ATCTTTGTATGGAATTGAATGTGGCAGCCGGTCGGCAGAAGATGTCTTCG
GTGAAGAACATTTGAAGCAATTTCCTTGTCATAAGAATTTGACTATTGAG
ACAAACCAAGTTTGGGAAGATGGATTTAAAGGAAAAGTTGGGATAACGGA
AATTCAATTTGGAAATTATATTTGTCCGGAGCCCATTAAAGCTGAAGCGT
GAAAAACCATGGCGCCCGAAAGGAGGAGGACAATAAGAAGTTTAGTATTT
TCACCAAATTGGACATCAAACCAATTGAATTAGCAGAAAAGGAAGTAGGG
GATGTTTGGGATTTCGGCTTCACCATTCATCATGATCAGGAAGAGAATAG
TGAAAAGTTAAAAGGTACATTAAAATTGCCAGTACTTCAAGATATGTCCA
AAGATGTCCTTGAAAACGATCCATTGTTCAAATATGGCCATGTCAACCTA
ACGTTTAACAAGAACGTCAGCGTCAGTAATATCACAGAAGATGAATCACA
ACTTTATAATAACAGTTTTAATGATAGCCATATCTTTGTATGGAATTGAA
TGTGGCAGCCGGTCGGCAGAAGATGTCTTCGGTGAAGAACATTTGAAGCA
ATTTCCTTGTCATAAGAATTTGACTATTGAGACAAACCAAGTTTGGGAAG
ATGGATTTAAAGGAAAAGTTGGGATAACGGAAATTCAATTTGGAAATTAT
ATTTGTCCGGAGCCCATTAAAGCTGAAGCGTGAAAAACCATGGCGCCCGA
AAGGAGGAGGACAATAAGAAGTTTAGTATTTTCACCAAATTGGACATCAA
ACCAATTGAATTAGCAGAAAAGGAAGTAGGGGATGTTTGGGATTTCGGCT
TCACCATTCATCATGATCAGGAAGAGAATAGTGAAAAGTTAAAAGGTACA
TTAAAATTGCCAGTACTTCAAGATATGTCCAAAGATGTCCTTGAAAACGA
TCCATTGTTCAAATATGGCCATGTCAACCTAACGTTTAACAAGAACGTCA
GCGTCAGTAATATCACAGAAGATGAATCACAACTTTATAATAACAGTTTT
AATGATAGCCATATCTTTGTATGGAATTGAATGTGGCAGCCGGTCGGCAG
AAGATGTCTTCGGTGAAGAACATTTGAAGCAATTTCCTTGTCATAAGAAT
TTGACTATTGAGACAAACCAAGTTTGGGAAGATGGATTTAAAGGAAAAGT
TGGGATAACGGAAATTCAATTTGGAAATTATATTTGTCCGGAGCCCATTA
AAGCTGAAGCGTGAAAAACCATGGCGCCCGAAAGGAGGAGGACAATAAGA
AGTTTAGTATTTTCACCAAATTGGACATCAAACCAATTGAATTAGCAGAA
AAGGAAGTAGGGGATGTTTGGGATTTCGGCTTCACCATTCATCATGATCA
GGAAGAGAATAGTGAAAAGTTAAAAGGTACATTAAAATTGCCAGTACTTC
AAGATATGTCCAAAGATGTCCTTGAAAACGATCCATTGTTCAAATATGGC
CATGTCAACCTAACGTTTAACAAGAACGTCAGCGTCAGTAATATCACAGA
AGATGAATCACAACTTTATAATAACAGTTTTAATGATAGCCATATCTTTG
TATGGAATTGAATGTGGCAGCCGGTCGGCAGAAGATGTCTTCGGTGAAGA
ACATTTGAAGCAATTTCCTTGTCATAAGAATTTGACTATTGAGACAAACC
AAGTTTGGGAAGATGGATTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053832-exon-scaffold_234-1575043694:220793..221248 | TCONS_00053832-exon-scaffold_234-1575043694:220793..221248 | Clytia hemisphaerica | exon |
| TCONS_00053832-exon-scaffold_234-1575043694:220384..220509 | TCONS_00053832-exon-scaffold_234-1575043694:220384..220509 | Clytia hemisphaerica | exon |
| TCONS_00053832-exon-scaffold_234-1575043694:219315..219476 | TCONS_00053832-exon-scaffold_234-1575043694:219315..219476 | Clytia hemisphaerica | exon |
| TCONS_00053832-exon-scaffold_234-1575043694:217480..218285 | TCONS_00053832-exon-scaffold_234-1575043694:217480..218285 | Clytia hemisphaerica | exon |
| TCONS_00053832-exon-scaffold_234-1510915933:220793..221248 | TCONS_00053832-exon-scaffold_234-1510915933:220793..221248 | Clytia hemisphaerica | exon |
| TCONS_00053832-exon-scaffold_234-1510915933:220384..220509 | TCONS_00053832-exon-scaffold_234-1510915933:220384..220509 | Clytia hemisphaerica | exon |
| TCONS_00053832-exon-scaffold_234-1510915933:219315..219476 | TCONS_00053832-exon-scaffold_234-1510915933:219315..219476 | Clytia hemisphaerica | exon |
| TCONS_00053832-exon-scaffold_234-1510915933:217480..218285 | TCONS_00053832-exon-scaffold_234-1510915933:217480..218285 | Clytia hemisphaerica | exon |
| TCONS_00053832-exon-scaffold_234-1491911889:220793..221248 | TCONS_00053832-exon-scaffold_234-1491911889:220793..221248 | Clytia hemisphaerica | exon |
| TCONS_00053832-exon-scaffold_234-1491911889:220384..220509 | TCONS_00053832-exon-scaffold_234-1491911889:220384..220509 | Clytia hemisphaerica | exon |
| TCONS_00053832-exon-scaffold_234-1491911889:219315..219476 | TCONS_00053832-exon-scaffold_234-1491911889:219315..219476 | Clytia hemisphaerica | exon |
| TCONS_00053832-exon-scaffold_234-1491911889:217480..218285 | TCONS_00053832-exon-scaffold_234-1491911889:217480..218285 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_234 | supercontig | scaffold_234:217480..221248 - |
Blast
The following BLAST results are available for this feature:
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