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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053817 ID=TCONS_00053817|Name=TCONS_00053817|organism=Clytia hemisphaerica|type=transcript|length=229bp
TCAAAGAATCATCAGTGCAGTGAATGTATCAAATTTGAGATGGTAATTTT
GGTAGACTCTGATGAAATATGGGAAGATTGGTCATGCTTTTACTTGGAGG
AGCCATCATACGATAAACTACATATTATCTTGATATAAGATAATTGAAAC
ATCGAGTATCATTTTGATCCAGTTAGATCACGTGACCATGTAAAAGTTGA
TTAATTGTCTGgttttcaaaatggaatat Run BLAST on NCBI transcript from alignment at scaffold_234:532955..536859+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053817 ID=TCONS_00053817|Name=TCONS_00053817|organism=Clytia hemisphaerica|type=transcript|length=3905bp|location=Sequence derived from alignment at scaffold_234:532955..536859+ (Clytia hemisphaerica)
TCAAAGAATCATCAGTGCAGTGAATGTATCAAATTTGAGATGGTAATTTT
GGTAGACTCTGATGAAATATGGGAAGATTGGTCATGCTTTTACTTGGAGG
AGCCATCATACGATAAACTACATATTATCTTGATATAAGGTAACACATTG
GGATTTTACAGATATTATTCTTTTCTACCGAGGCGTGCTTATATACCCAG
AAAGCAAAATACACAGAAGAATTTCTCAAATTCTCTGCTCTCGCACAGAG
CAGAAAGGGGAGAATAAGTTGTACTTCCTTTTGTAAAAAAGGCTGTGTAT
GGTAgataatgtttttaatatgaTAAATGTACCTTTGGATACACATAAAC
AACgataaatttgataaacagaGATTTCGTGACTGACAGTTTATGACTGC
CAAATAGCTAGGatcatattattttattttttactatAATAATAATTGTG
GTTTACTGTACTCTGTATgctacaccccttctcacagacccggtagattT
CTTGTATTGCTTCTCAGGACCTCCTGAAAATGGTCCCTACTAGCAGTGTT
TTAAGTACAACTATTATCTGGAGTCTGGTACTTGATAAATAATTACTAGA
AGGCgtagaaataaaattgatattttgcATGTTTAAGGGGGATACGACCT
GACTGACGAAGAAAGCCAAATCATCTTCGATGAAAGTAGAACTTGGTGTC
CTCTTTAAGGTCATGCTTTGATGTGACTTCTCTTTTCCTCCGccatttta
ttttccttttgacAGTAGCTTTCCTCAAAATAACAAGTTCTACTCAAAAA
CCAGCAGAAGTGACCGTTTCGGGAAGTAAAAGCTGCCAAAATTACGCTAA
ATCACTGTAACTATGCAGCTGtaacttcagttaaaagcaTCGAAATGTTG
TGTTGTTGTCTTTAAAAAGACTAAGAAATGATGGAATGGTAATTTAAAGT
TTGTTAGAGCTGGTGTCCAtcctaaaaatttaggtttttgagGAAACTTC
AGTAGTAATTTCGTACACCTTATTACTTTTTTATGGGTCAAATgggccca
aaaatcaataaaaatttataaaaatccaCTAAAACGGataattttacccc
ctggtttgtgcAGTTGCACTCTGAATGTGATAGTTTCAAGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNctattaataagcatacatcaatgttcttagtcaaattac
tcaattttttttatgagatagatgtttttttgctcacgagggcttacttt
taaagaatatatatgtgtttagacatgttTATTTAGAAAagctggccaaa
ttcgatatttttttataagcatactatCAACTACTTAGGtgttagctttt
ctcgagattggctcttttattctttataattttttgcacaaagatgcata
actataaagcctcgaatgtgacggagctcgattcttggaaaaaaaaattt
ggggtaaatttcagctaaaaagagNAAAAGCAAGCTCAgtaatatgcttg
taatatgtttattttttagacaaattcaggtcttggtatgcttataaacg
ttatgcttataaaaaaaacatgttaaacaAAGTGTGtgcctcattaaaag
ttgttttggtaGGTCCCAGTCTTATAAAATCGGGtataaagtgtcaaaat
tcagtgaaaatacccaaattttccctattttGCCCCAGGTAAacccccaa
aaataattttttgcaaaaatcttttgccaatAATGATCACCAATAATGta
tcttgaaacttttggcaaagtttcaaagcaattggtcaatttattcatga
gatatagcaaattaaatcatacatggaaagatattttccttaacaaatcc
ttgcAAAGGGTAAAAattaccccctaaactcgggccaaatatgaaaaatt
gacctggagttagctttggggaccgatcatttcttaaactaggatagttg
aggattccaaaaatgtatagtttatcctgtaaaatcttgggttaagcaaa
atgctcaggtttggctcccggactaaaaTGGGTGAACCTTCAGTCCCAGT
CACGCAGGTGGTGGGTGCATCACCATCAGGGAGCTCTGAAAAGTTGTTTA
TAATTGATTAATGAACTCATTGAACCTTAAATCTTCAATCTCAGACATAA
AAAAGGCCTGAagactttctaaaaattaattTCCTTCAATGTCGACTGGA
TTTGAAGCTTCTGGAATTATCACCCAAACTctccaaatccaataaaaaca
acattggcCCTGGTAAAAATGGGGTTTCAGAGCTTATTTTGTAATATTTC
GTAGCTAATGGAAAATAAGGCACCACCcaaaacagcagttactacactgt
gtagtatgtaactgctttcaaaatttttgaaaacagtaCCACCACAGTAG
TAagtgtcttgtagtaactgcgtgcccccccctgaNcccgcttattagaa
tttagaaaattttctaccccatgcttattcggacccccccccgtctattc
gggagacaagagtaactTTTTCCGGGCGTACCCTTTAATATAATTTCATC
TTTTCTACCTTACAGATAATTGAAACATCGAGTATCATTTTGATCCAGTT
AGATCACGTGACCATGTAAAAGTTGATTAATTGTCTGgttttcaaaatgg
aatat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053817-exon-scaffold_234-1491911889:532955..533093 | TCONS_00053817-exon-scaffold_234-1491911889:532955..533093 | Clytia hemisphaerica | exon |
| TCONS_00053817-exon-scaffold_234-1510915933:532955..533093 | TCONS_00053817-exon-scaffold_234-1510915933:532955..533093 | Clytia hemisphaerica | exon |
| TCONS_00053817-exon-scaffold_234-1575043694:532955..533093 | TCONS_00053817-exon-scaffold_234-1575043694:532955..533093 | Clytia hemisphaerica | exon |
| TCONS_00053817-exon-scaffold_234-1491911889:536770..536859 | TCONS_00053817-exon-scaffold_234-1491911889:536770..536859 | Clytia hemisphaerica | exon |
| TCONS_00053817-exon-scaffold_234-1510915933:536770..536859 | TCONS_00053817-exon-scaffold_234-1510915933:536770..536859 | Clytia hemisphaerica | exon |
| TCONS_00053817-exon-scaffold_234-1575043694:536770..536859 | TCONS_00053817-exon-scaffold_234-1575043694:536770..536859 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_234 | supercontig | scaffold_234:532955..536859 + |
Blast
The following BLAST results are available for this feature:
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