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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053813 ID=TCONS_00053813|Name=TCONS_00053813|organism=Clytia hemisphaerica|type=transcript|length=946bp
attatttatttttttcgtaaaaatatttttgcagatGGTCAAATACACCT
AGAGCTACAAATTGACACATTTGACCAGAATGGGACCTTATcaatttaat
tttgttttcaatttattCACTCACTTCATTCTTTTCCAGAGGGCACACAG
TGAAATGCATACAACAGCGGTATTAGTATTCATCGGGTGCACCCTGATCA
CCGGGACATCATGTTTGACCAACATACCCGCATACTGCCATAAACCACAT
GGTCAAACATGTGCTTGGTACCCAGAATGCATCGAGAAACGTCAAATCTG
TCCTGGGAACGATAATTACGCAATGAAATATGCCCATCATTTTTGCACCA
AGTTCGGTCAAGAATACTCAACATTTGGCACCACTGGTCAAAAATGGGTA
GATGCAACTCGCCTTTGCCTGCAACGTGCTTTAGTACCCTATCTAGATGA
CCAAAGTGTTACATGCAAGAATTTGAAGAAAGTAGCTTTCGACTCACACG
TTTGTTGTTACCTGGGCGGTCCCGCCTGTACACCCTCAAATGAAATCCGC
CCATCAGTTTGTGACGTTCCAATTAAGGATTGGCTAAGATTGTTCTGGAT
CGTCAAAGGGTCATTCAATATTTTCGGACAGCATGCAGAAGTTGTTGGTT
CTTTGAGACAAATTATGGGCGTTCTTAAGGGGTGTGCTAAACACCACGTC
GGGCGGTAGAACGATGGATATTTTTTATATCATATTTTTTGCACTAAATa
gagtctgttcacgataagtctTAGTTTGGGTTTATAGTACCGATCCCCTT
GAGGTTTCCGTGGTTTCCGCGTGGCTGGTATAACTAAAAAGTTGCAAAAC
TTGTTGTGAACAGGCTCTAAGTACattataaatatttatatttttattga
aataaagaaaaactatttttgaaattcaataagATTTGTTAGTTGC Run BLAST on NCBI protein sequence of TCONS_00053813-protein >TCONS_00053813-protein ID=TCONS_00053813-protein|Name=TCONS_00053813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MGPYQFNFVFNLFTHFILFQRAHSEMHTTAVLVFIGCTLITGTSCLTNIP
AYCHKPHGQTCAWYPECIEKRQICPGNDNYAMKYAHHFCTKFGQEYSTFG
TTGQKWVDATRLCLQRALVPYLDDQSVTCKNLKKVAFDSHVCCYLGGPAC
TPSNEIRPSVCDVPIKDWLRLFWIVKGSFNIFGQHAEVVGSLRQIMGVLK
GCAKHHVGR Run BLAST on NCBI transcript from alignment at scaffold_234:446598..448240+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053813 ID=TCONS_00053813|Name=TCONS_00053813|organism=Clytia hemisphaerica|type=transcript|length=1643bp|location=Sequence derived from alignment at scaffold_234:446598..448240+ (Clytia hemisphaerica)
attatttatttttttcgtaaaaatatttttgcagatGGTCAAATACACCT
AGAGCTACAAATTGACACATTTGACCAGAATGGGACCTTATcaatttaat
tttgttttcaatttattCACTCACTTCATTCTTTTCCAGAGGGCACACAG
GTATGTAGTATGTTTTTACTGAACTACTTAACTTTACATTATTAGAAACT
TGTTAATTCGACCTCAACATTTATAGATCTAAAATAATGTGTTTCTTTCC
AATCCAATCACTGATTCAACTAGTACTTCTAAAATGACGACTCTAAGATA
ATGTTAATGATACATTTTCAAAGtaaactttcttcaaagataGACTGGCC
ATTTCAAACTTACTATTTACGAAATTTCACTCTAGCAATTTTATACagta
aattttctctttttctaacCCCTTTACGAAATTTTATGTAATTCCAACAg
gctctacacgttttttataagaacatccaaaatatttgaagtcgGACGTT
CTTAACGTTCttagcctcaaaatgttcttaacatgttcttgatttcgcca
tttttttattgttgtctattttcctaagaaattgggtgttttaaggTCTA
TAAAGccataaatgttcttaacttgttcttaacattttggccattgaagc
cttatgttcttatatagtttgttcttatagaaaaatgtgtaCCACCGCTT
TTTTTCCGTAAACCGCCTTACGGCTGAAAACTCCACGAATTTATATATTC
CCCGTTTACAATATCCCTCTAATCGACATTAGCATCATCGAGGTACATTG
AAGATTGAATTAGAGGGAACCAATTGAACAAAAATCTTCTCATTTAGTGA
AATGCATACAACAGCGGTATTAGTATTCATCGGGTGCACCCTGATCACCG
GGACATCATGTTTGACCAACATACCCGCATACTGCCATAAACCACATGGT
CAAACATGTGCTTGGTACCCAGAATGCATCGAGAAACGTCAAATCTGTCC
TGGGAACGATAATTACGCAATGAAATATGCCCATCATTTTTGCACCAAGT
TCGGTCAAGAATACTCAACATTTGGCACCACTGGTCAAAAATGGGTAGAT
GCAACTCGCCTTTGCCTGCAACGTGCTTTAGTACCCTATCTAGATGACCA
AAGTGTTACATGCAAGAATTTGAAGAAAGTAGCTTTCGACTCACACGTTT
GTTGTTACCTGGGCGGTCCCGCCTGTACACCCTCAAATGAAATCCGCCCA
TCAGTTTGTGACGTTCCAATTAAGGATTGGCTAAGATTGTTCTGGATCGT
CAAAGGGTCATTCAATATTTTCGGACAGCATGCAGAAGTTGTTGGTTCTT
TGAGACAAATTATGGGCGTTCTTAAGGGGTGTGCTAAACACCACGTCGGG
CGGTAGAACGATGGATATTTTTTATATCATATTTTTTGCACTAAATagag
tctgttcacgataagtctTAGTTTGGGTTTATAGTACCGATCCCCTTGAG
GTTTCCGTGGTTTCCGCGTGGCTGGTATAACTAAAAAGTTGCAAAACTTG
TTGTGAACAGGCTCTAAGTACattataaatatttatatttttattgaaat
aaagaaaaactatttttgaaattcaataagATTTGTTAGTTGC Coding sequence (CDS) from alignment at scaffold_234:446598..448240+ >TCONS_00053813 ID=TCONS_00053813|Name=TCONS_00053813|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at scaffold_234:446598..448240+ (Clytia hemisphaerica)
ATGGGACCTTATcaatttaattttgttttcaatttattCACTCACTTCAT
TCTTTTCCAGAGGGCACACAGTGAAATGCATACAACAGCGGTATTAGTAT
TCATCGGGTGCACCCTGATCACCGGGACATCATGTTTGACCAACATACCC
GCATACTGCCATAAACCACATGGTCAAACATGTGCTTGGTACCCAGAATG
CATCGAGAAACGTCAAATCTGTCCTGGGAACGATAATTACGCAATGAAAT
ATGCCCATCATTTTTGCACCAAGTTCGGTCAAGAATACTCAACATTTGGC
ACCACTGGTCAAAAATGGGTAGATGCAACTCGCCTTTGCCTGCAACGTGC
TTTAGTACCCTATCTAGATGACCAAAGTGTTACATGCAAGAATTTGAAGA
AAGTAGCTTTCGACTCACACGTTTGTTGTTACCTGGGCGGTCCCGCCTGT
ACACCCTCAAATGAAATCCGCCCATCAGTTTGTGACGTTCCAATTAAGGA
TTGGCTAAGATTGTTCTGGATCGTCAAAGGGTCATTCAATATTTTCGGAC
AGCATGCAGAAGTTGTTGGTTCTTTGAGACAAATTATGGGCGTTCTTAAG
GGGTGTGCTAAACACCACGTCGGGCGGTAGATGGGACCTTATcaatttaa
ttttgttttcaatttattCACTCACTTCATTCTTTTCCAGAGGGCACACA
GTGAAATGCATACAACAGCGGTATTAGTATTCATCGGGTGCACCCTGATC
ACCGGGACATCATGTTTGACCAACATACCCGCATACTGCCATAAACCACA
TGGTCAAACATGTGCTTGGTACCCAGAATGCATCGAGAAACGTCAAATCT
GTCCTGGGAACGATAATTACGCAATGAAATATGCCCATCATTTTTGCACC
AAGTTCGGTCAAGAATACTCAACATTTGGCACCACTGGTCAAAAATGGGT
AGATGCAACTCGCCTTTGCCTGCAACGTGCTTTAGTACCCTATCTAGATG
ACCAAAGTGTTACATGCAAGAATTTGAAGAAAGTAGCTTTCGACTCACAC
GTTTGTTGTTACCTGGGCGGTCCCGCCTGTACACCCTCAAATGAAATCCG
CCCATCAGTTTGTGACGTTCCAATTAAGGATTGGCTAAGATTGTTCTGGA
TCGTCAAAGGGTCATTCAATATTTTCGGACAGCATGCAGAAGTTGTTGGT
TCTTTGAGACAAATTATGGGCGTTCTTAAGGGGTGTGCTAAACACCACGT
CGGGCGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053813-exon-scaffold_234-1491911889:446598..446747 | TCONS_00053813-exon-scaffold_234-1491911889:446598..446747 | Clytia hemisphaerica | exon |
| TCONS_00053813-exon-scaffold_234-1510915933:446598..446747 | TCONS_00053813-exon-scaffold_234-1510915933:446598..446747 | Clytia hemisphaerica | exon |
| TCONS_00053813-exon-scaffold_234-1575043694:446598..446747 | TCONS_00053813-exon-scaffold_234-1575043694:446598..446747 | Clytia hemisphaerica | exon |
| TCONS_00053813-exon-scaffold_234-1491911889:447445..448240 | TCONS_00053813-exon-scaffold_234-1491911889:447445..448240 | Clytia hemisphaerica | exon |
| TCONS_00053813-exon-scaffold_234-1510915933:447445..448240 | TCONS_00053813-exon-scaffold_234-1510915933:447445..448240 | Clytia hemisphaerica | exon |
| TCONS_00053813-exon-scaffold_234-1575043694:447445..448240 | TCONS_00053813-exon-scaffold_234-1575043694:447445..448240 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_234 | supercontig | scaffold_234:446598..448240 + |
Blast
The following BLAST results are available for this feature:
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