TCONS_00053801 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053801
Unique NameTCONS_00053801
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3232

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053801 ID=TCONS_00053801|Name=TCONS_00053801|organism=Clytia hemisphaerica|type=transcript|length=3232bp
TGATTATATGCGTTTTACAATTATGAACCAATCGGACTCGTACATCACTT
GGGTGAACAGTCAactgggtaaacgagacaaaagtCGTCACGTGAAAGAT
CTTTCCAAAGATATGAGGGATGGTGTGGTCTTCTTGCAGCTGGTTGAAGT
CATTAGCGATTCAGAGCAACAAATATTGGATCATTCACAACTTTCGATTA
ACGATATGCGATACAACTTGAACAACGTTTTGCAATTCTTATCCAACAAC
AATGTCAGGGTTCACCACATCTTACCAAAAGAAATCATCGAGGGAAATCT
AAAGACCACCATGAGATTGATTCTCGCCCTTGCCGCCCATTTCAAACCAG
ATTCCTTTAACTATAACGCCCTAAACAATAACACGAGTACGCCCTTAAAG
ACCAACACAAGTACGCCCGTCAGTAAAAGCACGAAGAAGAAATCTATGCA
AAGAGCACCATCACTCGTTTCGCTCGCTTCAGAAGCGGCCGCTTCACTAG
CTGAAGCGAGCAAAAATGCGTCGAAAGGCGGGTCGACTTCAAGAAGTAGC
AGAATCAGGAAGCAGCAATTATTCGACAGCGTTCCACCGAAAACAAAACA
TGTATCTCAACGCCACCAGCAATCGTCCAATCAGTATCAAGCTTCCAAAA
GCTTCACAATGCCTTCATCATCTTACCACAATCGGTCAGAATCAACACCC
CCACCCTTTGAACGCCCAAAAACCTTAAGAGGTGAAAGTTGCAGCGCCCA
AACTCGCCCTAAATCATTAAGACTTGAAAACACTCAAATCCCCGACTTAC
CGAAAAATGTCTTTAAACCGATTCGGAATAGTAGAATTTCCGTAACGGAA
TTTCCAACGGATGGATCAGAAATTAAAACGAAAATCTCAACTGAAGCTTC
AtcaacaaacattgaaaatgTAAAAAGGGCTTTATTACTAGAAGATAAAC
TATTACCTTCATCGAAAAGTACAGATGTTGATAGTGTGAGAAGGACTTTA
TTAAAAGAAGATCACACTTGTTTTTCATTGACAAGTCGTGACAATGTAAA
ACGGACATTAATACCAGGCAGTGAATCTGAAGGAAGCGAGGTGCAAGATG
AATTGACCGGTTTACACGATGACCTTCTTGAAGAATTGAGTGATGCAAAA
GATGTCATGCAACAGCTACAAACCGTCTTGATGAACGGACGAACATCGGA
AGAAATGTTGGGATTAGAATCTCCGCGTGATGAAAGTTTCCAAGAACAAT
TGGTTGTGAAAAATATTATGTTAGAACAGATTGAGAATGAATGTGCTGAT
TTAAGgCATCAATTGAACGAATATAAAGAAATCAATATGCGACTGACGAA
TGAAAAGCATGGCGTTGAACTCCGTTTCTCACAACAAGAACAACTCATCT
TATCGCTGAAATCGAAACTTTTAGAACACGAACAACCTAACGTAAAGAAA
CAAAGTGAACAACAATTACAAGCATTGCTAAGCGAGAAAAATAACGAAGT
TCAATTGCTGTATGATGAGTTGAGTAAGCGAGACACAATCattgaaaaac
ataaaaacgaaCTGGACTCGATGAGTAATGATATTGTCAACAAAAAGCGC
TCAGAGgcGAGCTTGTATGCCAAACTCGAATCTAGCGAGTCTATGGTCAG
CTCTTTACAATTGCAGCTTCATGAAGCCACGGAAAACCTTCATCTCCAAG
GCAACAATACCCAACAGCAACGTAGCAACAATTTTCGTGTCCCTCAACAT
GAAACTGACACAAATACCACGAAATTACAAGATGCTAAAATACATCGAAT
TAAACAAAAGATCACAAGAGAGCATCACAATCTATCGACCACGTTGAAGA
AtattaaagggaatttcccaagtAACGATCCAGTTCAACATGCATTCCAA
AGTATCGAACACAGCTTATCATCTTTGATGGATTCTGTCTCCATGTTAGA
TGTCACCAAAACTCAACAAAAAACACAACAAGGACAATATCCCTCAAATA
AACCTCAAACGATAAATTCAAGCTCTCATAAAAAACCACACAAGACTTCT
GACCAGTATCAAAGGTTATCCTTACCTAAGCATCATTCATCACGATCGAC
AAGAACTAAAAGTAGCATTTCATCTGATTCAGGTTATGACCACACAAACA
CAAACAACACACTGGATGCATCTGAGCAAGtcaaaattgtttattttctc
GGCAAATCTGTTACACCCATACTTAAATCAAGTGACATTGGACTTGGTTA
CTTAACGTTACATGATTTCAAAGAGTTGGTTAACAGACCAGGAAAATATC
GATATTTCTTCAAATCGAAAGATAAAGATTTTGGATTTGTCAGAGAAGAG
TTGCTATATGATGAAGACTTGGTCCCTGGCTATGAAAACAAAATTGTCTC
TTGGATTGAGAAGTTATCAGTAGAGGAGGTTTGAGTCTTTCTCCGAAGCT
ATAATTACAATTATTAATTAtaattatttatattttcttacCAAGAGTGT
TTGTTTTAATttatattttggtcaatttaaatttttaacgGATTTTACAA
TTAATGActgataactttatttatttttcttatttttgtaaTGTATATAG
AATAATATTATTAACAATTAATGCAGACTGGTGGCCTTGTTTGCTCGGAG
CTTGTTCGAAGGGTTTAGAGGGGGTAGATAACGACTTTCTGAAATGAATG
TATTTTGGGGCATTTTGGTCCCGATGATATCatcaaaacctaaaaatttG
CGATATCTGCAAGAATTGACCTGATTTGCTCGGTAAAACGAAAGAATCTC
CTAGAACAATGCGAAATTGATGTCAGTTAAGTGAAAATTACCCTTCGATG
ACATCATTATGGATCagtatgacgtcataaaacatatatatagtgaagat
atgtaatatctgtcattttagaaaaagaaaagtattgatatataaataac
tcaaactgataaaaacgaaaaaagttaagggtatttttgttaattgtgtg
catttacgatttttttggtatttattattttttaatcattccgaaacaga
gggtaatttagcaaaaagttaaagggaatttaaatagtggtatgtgaaag
aaaaacctaatccaaatgaagatagaagaaaagtaatagtggagaaacaa
tgaattgcaaaaaacttttttgataaatacacTTCCTTAAgttcaaaata
catacaaaatggggacaaatacaaaagcaaac
Run BLAST on NCBI

transcript from alignment at scaffold_234:187994..201484+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053801 ID=TCONS_00053801|Name=TCONS_00053801|organism=Clytia hemisphaerica|type=transcript|length=13491bp|location=Sequence derived from alignment at scaffold_234:187994..201484+ (Clytia hemisphaerica)
TGATTATATGCGTTTTACAGTAATATCGACTTTCTGTCTTCTCTTTCCTC
ATTTTTGACGAAAGTCGGCAGAAAATCgactgtctaaagtcaatgcgata
ccttcttttgacgtcaatgcaatgaattgttgtatctttttcaagcaaag
atttgaaACTGCCGACTTTCCGTGGATCTTCTCCCGTCTCACACATTGAA
AGGAGTTTCCTTTACAACGCCATACTCTCTAGGCTAGACTTTCCATCGCT
TAACTTCATGAcagataaaattttttgattggcttaaattTATACACGGT
TCTCTATATCTCTTTTTTGTCTCTTTCATTCAGATTATGAACCAATCGGA
CTCGTACATCACTTGGGTGAACAGTCAactgggtaaacgagacaaaagtC
GTCACGTGAAAGATCTTTCCAAAGATATGAGGGATGGTGTGGTCTTCTTG
CAGCTGGTTGAAGTCATTAGTAAGTTTAAAAGTTTATCCAGTCAGCACAC
AACCCTATTTCAATGTTCCTGCAAGGTGTTTAGAACGCTTAACTTTAAAG
GGGGGGggagtgacgaaattttccccgcCGAAAACCCTTTCTGCTCAACT
TCAAGGGAGCTGtgacaaagattttccaaaaagttactAAAATTTCCTGA
TTTAAATTTTACCGCCGACAAAAATTTTAACCGACTAAGTTTTCCTGTCA
AAGGTATTATCTTGACGTttatattttggaatttttgtgcCAGCCCAGTG
CTAAAACTGTCTAATGCCATAAAAGCTAAAATAAACTTACTTCACAGGac
tgtaactttttatctaaGAAAAATACGGAAAATCTAAGCACATattaaaa
aatttgttcaaaagttCTATAAAATATCATgtcaaaatcttcttttttta
ccctacttcatttttcaatttttcaaaagtttttaactttttacatTAGA
CACGACACGCTATAGTAAATTTGAAACGTGCTTagggaaaaaaagttaaa
ctcgtgtgaaaatatctttccaacggtgtatatcGTTTTAATATATCGGA
GCTggaaaagtgttaaaaaatgtttgtctttTGAGACAGAAATAAGGTAT
ATAAAAGGCAAAGTTTCAGTCTGGGGATGGTGATTTTACATAACCACTCA
CTAATGGTGTCATTGTATTTCACTTTCGTACGTAGGCGATTCAGAGCAAC
AAATATTGGATCATTCACAACTTTCGATTAACGATATGCGATACAACTTG
AACAACGTTTTGCAATTCTTATCCAACAACAATGTCAGGGTTCACCACAT
CTTACCAAAAGGTCAGTATTCCATCCAAAGCAAAATTTGTGATAGACAGT
TGTACGAGCTTTGCACTATTTTTAAGGTCAATAGTTGGtcttaacttttt
caaagaTCTTATAAGAAAGATGAGAGTCAATAATACCGGGGAATCACCCA
TGCCTTCTTAAATACTCAAAAACTTTCCTTAGGTAGTATATAAGATTGCT
TTAacagtattcatgatatgcatcactggagagtcttccgagaaagtttt
caacccaatacgtcacttaaataATAGAACAAGTGCATACCATGAATAGG
TTACGTTACGTTACGTTGCGTTATGAACGCTAAAATATAGACGTGTTGTG
TTTTACTGGTATGACATCGGCACGTTAACATTGTTCTTATTTCCCATACA
AAGTCTTACATGTCATTTTCAGAAATCATCGAGGGAAATCTAAAGACCAC
CATGAGATTGATTCTCGCCCTTGCCGCCCATTTCAAACCAGATTCCTTTA
ACTATAACGCCCTAAACAATAACACGAGTACGCCCTTAAAGACCAACACA
AGTACGCCCGTCAGTAAAAGCACGAAGAAGAAATCTATGCAAAGAGCACC
ATCACTCGTTTCGCTCGCTTCAGAAGCGGCCGCTTCACTAGCTGAAGCGA
GCAAAAATGCGTCGAAAGGCGGGTCGACTTCAAGAAGTAGCAGAATCAGG
TATGTGATTAAATAAAACGAcctaaaagaattaaaatttgcCTCTTAACC
TTTCCAACacgcaacattttttgaaaaatgtgtaaatttccaactttttt
ttttaaatctaaaatttcaaattggcataaaagTTCAGTTGTAACTTTAG
AGTTAGACAATGATTTCGGTACCGTAAAAACCTTTCTAAAGTCTAGTCTG
GGACTCGGTATTTTGGCGAATTGAAAATGTCTATAAACGTCTGCCGGGTC
TGAAAGTGTTAACACTTTATTTGACGCCGGATGCAGAAATTTCTTAGTGC
TCCTTTTTTTCCCTTCTACCAACCGTGAAGATTTTATGGCGCATTTGTTt
cttactttttcaaatttcaatcaaatacCACGTGTGGGCTAACATCAATG
AAAGCTCACGCCATAAACTGAtataatgtaaaaattttatgagttggttc
aaaaatatttcacagcTGGATATAGACTAGAATATTTTTCCTGCTACAGG
CAGAAAGTgcatacttttttttataagaaagtattttttccTTCTGTCAC
TAAaagcaatttttggaaaaacttttcAGGGCTTTCCATATTTAGAGCTG
AAATTATAAAATACTTTTGGAAAACTTTCAAGGGCTTTTTTTCAATTAAT
CCATatatttttagctaaaaatatgaaatatttgtGACCATCGATAGTAG
TTATCCACAGATATACTTTTCCAGATATTTGAGGTCTTTCAATTTGACGT
AATATACTTAAATTTTcgtataagaacatttttacttTCAAACCAAAAAC
ATATTTTACAAACAATAAATTTTCCTTGTAGTTATATCAATATCATATAG
CTATAATatcagttttcttaaaaattcaaacATCACTTATATATTCAAAC
ACATCATTCAACGACAGGTTTTTCTATCATTCAAAAACCATCTCTCTTCG
TCTCCGCATACGGATTAACTGTTAAAATTCCTAAAACTTTCTCACATata
tataaaaaacttttttaagactaaatttttattcaaactgTTTTAAAAGC
TTCATTGGTGGGATAAGACAGGATAAGAGGGTGCTATATATTGATGGGAC
AAATATATGtttcatattttgaaatattttgatgataatTGTTGATTCAT
TGATGTATTTTTGTTTGGAAACCTCTTTTCGTTTCGAACATCAAATTCAA
AGGTACTACACTAATTCATTGTTTTccaaatgacaaaaaaacaatgCTGA
ATTTTAAGACCCTCTTCAGCCAATAAAATAAGCATTAGAACAATGTAAAC
TACGAAGTAAAAACACCCCAGTCACAGCCGAAATTTACAAGAAAGTTATT
TCAGCGCtatatttttctctattttcccTTTAGGAAGCAGCAATTATTCG
ACAGCGTTCCACCGAAAACAAAACATGTATCTCAACGCCACCAGCAATCG
TCCAATCAGTATCAAGCTTCCAAAAGCTTCACAATGCCTTCATCATCTTA
CCACAATCGGTCAGAATCAACACCCCCACCCTTTGAACGCCCAAAAACCT
TAAGAGGTGAAAGTTGCAGCGCCCAAACTCGCCCTAAATCATTAAGACTT
GAAAACACTCAAATCCCCGACTTACCGAAAAATGTCTTTAAACCGATTCG
GAATAGTAGAATTTCCGTAACGGAATTTCCAACGGATGGATCAGAAATTA
AAACGAAAATCTCAACTGAAGCTTCAtcaacaaacattgaaaatgTAAAA
AGGGCTTTATTACTAGAAGATAAACTATTACCTTCATCGAAAAGTACAGA
TGTTGATAGTGTGAGAAGGACTTTATTAAAAGAAGATCACACTTGTTTTT
CATTGACAAGTCGTGACAATGTAAAACGGACATTAATACCAGGCAGTGAA
TCTGAAGGAAGCGAGGTGCAAGATGAATTGACCGGTTTACACGATGACCT
TCTTGAAGAATTGAGTGATGCAAAAGATGTCATGCAACAGCTACAAACCG
TCGTAAGGATCTTCATAGAAAATgttttcccagctggcacacaacgttgt
gtgtcagctgggttgtAAACTCTTTCTAAGCCAAACagcacacaatgttg
tttcaacgtatAACTAGAATTCAACATGAATGTTATGGCCGTGAGATTGA
CGTTACTCAGACTTTTAGTGTCATGTGATAACTCATTTTTCCACCTAATT
AGCGATTAGTGATTTGAAGCATTTGGTTTAGAATGGGTCAGGCCGTTTTG
AAAGCCTTTAGCAAAAATCATGTCTGAAAATCAGCGATTCAATTCTGGTG
ATTCTGTTTAGAATAAAGAATCATATTTTAGATTATCGTGGACCTGGCAC
AAAACTTACAGTTCCAAAATATTGAGCTATGTTTATAAACCACTTTTTAA
ACCAATTAAAAGATAATGTCTACAGAATAATACAATGCAGACAGGTCCTT
TTATATTACTCCATATCATATTTTATGCAGTTGATGAACGGACGAACATC
GGAAGAAATGTTGGGATTAGAATCTCCGCGTGATGAAAGTTTCCAAGAAC
AATTGGTAAGTTCATTCGTGATGTGCGGTGGCaagttgaaatttgaaaaa
gtttcttctGGTGGAACATTAATAAATCCTTTTAATTCAATCAGAAAGAT
GCCAATTTTGGTCAATTACTTTTAAAACTTTCGGGTAAAACTTTCTATCG
CGGGAAAACGCCttcgttaattttttgaaaatctttgcaaGAGCTTCTAT
CGTGGTTCTAATTAAATCGCTACTTCAACGGGCTAGTATGTACACTATTA
GTAATTTCTCCGTACAATAGCCTATTCGATTCATACACTGATAATTATTG
TCATTCTTTTATATATCTTTTCAGGTTGTGAAAAATATTATGTTAGAACA
GATTGAGAATGAATGTGCTGATTTAAGggtaagaaaaatgttcttgTTTT
CCCTCTGAGGATACAGTGCTAAACCTGTAAATCAAAATTAACAAATAACC
ACGTGACCAACTTTTATTCAGGTACTTTCCATCAAATCCACTGACCCATT
CATTCATtcctattctggtctgtaaaataccaactagACAGGGTGGCTGA
ACCAAAATTTTACAGATCATTAGGTTCTATTGTATTTTGCACTTGTAATA
GAAAGTCACTTTcaacattttggaaaattgttaacTTTGTGACTTCATTT
TCAGCATCAATTGAACGAATATAAAGAAATCAATATGCGACTGACGAATG
AAAAGGTACCCTTGTTTTCTCATAACATTTCCAGTTTAGGTTATCAATTT
CTTGAACTTAAAGGtcttttgttaaaatttgtAAAGAAACTATCTGGAGG
GGGTACCTATAGGTAAAGTCCCAATAAGGGGATGTATTGGTTTGTCAGGG
TACCAATTTTTTACCTTCACGGAGTCCCAACTTGCAATATCAGGAAAATA
TCATCATTTCATATATTCGTATAtttcatagttttgaaataatttcCTAT
CCATTCCCTATCCATCTGTGCATGAAGCTTTTGAAGTTCTTCTCGCTTGT
TACATTCACTAACCTTGACCCCTACTCTCTTTCTGTTCTCCATAGCATGG
CGTTGAACTCCGTTTCTCACAACAAGAACAACTCATCTTATCGCTGAAAT
CGAAACTTTTAGAACACGAACAACCTAACGTAAAGAAACAAAGTGAACAA
CAATTACAAGCATTGCTAAGCGAGAAAAATAACGAAGTTCAATTGCTGTA
TGATGAGTTGAGTAAGCGAGACACAATCattgaaaaacataaaaacgaaC
TGGACTCGATGAGTAATGATATTGTCAACAAAAAGCGCTCAGAGGTAGGA
ATTCTTGACAGTTCGGCATGTTGCATAGTTCCGCAGCTCTGTGAAGGTGC
TCTGTGATTTGAAATTATGAACACCGACCAATTTTCTGTTCGTCACCCTT
CGACCCTGTTCTTAGTACAAAAGTAAGCTTTGTTAAATTTTGTAACCAAA
AAGCTGCGGAATTCGACAACGTTGAGGAATTTTACAACGCTTAAATTGCA
GAATTTCGCAGTGCTGCGAttcaatacacaggttgcaaaattaaagtctg
aatacaaatcacgcttttacttgaaattttgatgtgcttgttacatgata
tttatttctgattggttcgaatttattgacactaataaagctATCAGCTG
TTAGTTGtaaagtaacatgggaataaaatcacgtgaactttttcgagtaa
tcacatgttttgactttAGTGATAtcattttgcaacccgtgtattcaaTT
TCCCGAACTGTTGAGGAGTGAAAACACGAGAAATGTTGGTTCAATGCAAA
ACACTCCATTTGTAATAACAAAAGGAAAACCCGTTTCGTTTTAAGTGAGC
GGTAGAACTTAAAACTAAAATAAGATAAGAGACAAATTTGAGAGAAATCT
CATCCAACGTTAAAGAATTATCGCCTCATAACATGGGTCCCAGCTAGTGA
TTTGCGTGATGACGCGACAATTTTCTGTCCGTTTTCTGTCCAAGTTTATC
TGGTATCCTAATAGCGGATTGGTGGCCGCcaacgctaaagctctaaagga
gtaGGCCAACTTGCCATCGGAGTAGAATGATAGATCATACTCGAGCTTTG
ATGTGCCAAATCCAAAGTCTGGCTCAACTATTCTAGCGCTTAAGCCTGAT
AATTTTCAAGCCATCCGCTACAAAATCTGTGACGGCTCGCCAGACGGCGA
AATTCCATAATCTAAaacttccagatgttgaaaattctcccgtccttcag
agctttagcgtgttggAAGAAATTTCTGCATCAAGTTTCAGTTACGTTCA
AGATTGAATCAGCGAGAATTAACTGTtcacatttatttttttttttcaca
ggcGAGCTTGTATGCCAAACTCGAATCTAGCGAGTCTATGGTCAGCTCTT
TACAATTGCAGCTTCATGAAGCCACGGAAAACCTTCATCTCCAAGGCAAC
AATACCCAACAGCAACGTAGCAACAATTTTCGTGTCCCTCAACATGAAAC
TGACACAAATACCACGAAATTACAAGATGCTAAAATACATCGAATTAAAC
AAAAGGTCAGATCTGtttcaaaattgtttcataTGTACCAACTCCaatac
ttgaaattttgaagttaaTCATCGGACGATTGGCGAGAGATACATTCCAA
tacacagatttctgtaaagtcCGAAGATCTAGATAAATGGAGTGCTTTGG
CTGAGAGTgcgccgtggttaggtaggaaattctacctaggtcacgtgata
ttacaatagaattcctgcgcttgaccaatcagaaggatggtgggttttcg
aaaacaatagcaacaacaTTTTTGCGATGCtcacttttttgcttggaaaa
gcttaaagcACGTCATCTAGCCTACAGAAGTCTGTGGATACAGGAGCAAT
TATTTTCGACTGCGTGGAGTGTCAAGATCTGTACGGAGATTATAGATGAC
GAAAGTTTAGACTTTTTCTTCGTGTGTTAAGAGTTCGTGTTCAAGTTCGT
GGGGAAAAttgtacagtagagtctctttaactcgaacctctataactcga
ttgTCCCCTTGACTCGAACAAGTTTATCGCCCCTTtaattaacaatgcct
tataaattTTACTCCATAACTCCTGGAATCGAAAAAATTTGTGTTCTCCG
TGCAAGCTCGAGTTATAAAGACTGAACTGTACTCTAATGTCATTGTGTGT
CAAGTAGAGAATTTGTGGCAAAGATTATATTTTGCATAGTTTTTAAGAAC
TCTTATTCAATATTATACAGATCACAAGAGAGCATCACAATCTATCGACC
ACGTTGAAGAAtattaaagggaatttcccaagtAACGATCCAGTTCAACA
TGCATTCCAAAGTATCGAACACGTGAGTCAATATCACCCATAATGCAACA
TCCTTTTGTTGTTAGAAATCCGTAGTGCTTTTTAACTGAGACCAAATCTG
CAATACAGATCTATCTAACATATACAACTAATTCTTGaaatgcgtaagtc
aagattacgtcatttttcctatcagAAACACCCAAAAACACCGGAATTTG
ACTAAAAGTAGCAACACATTGTTTGCTTATAGGTCAAATTCTGGTGTTTT
CGGATGCCGGGGGGGGGCAAATAGGTTACGAggatgcgccgctggtcagg
gtaccttttttaacctctttAAGGTAGGGtaggtcgcaaaaacaccaaaa
tagaaaaatcagtccctcgtaggatGGCttgtttggaaaatttggggaaa
aaagtagaaaatttgagaaaattttggaatttcagtcccattcagggtca
ctttatTCGCAAATTTccgcaattttttgaaaaaatgagtcccacgtagg
gtctatttttcgaacctcagcggagttCCCTTGttggtcggcaagggtag
taccacccccccccccccggggttttttaaaaaaaaaaaaaaaatttttt
ttttattttgtgtttttaaaaCTATGCATCTTGTTTTATCCTTATtagaa
acccggggggggggggggggaccccccccccccccccggggttttttaaa
aaaaaaaaaaaaattttttttttattttgtgtttttaaaaCTATGCATCT
TGTTTTATCCTTATtagaaacccggggggggggggggggacccccccccc
ccccccggggttttttaaaaaaaaaaaaaaaattttttttttattttgtg
tttttaaaaCTATGCATCTTGTTTTATCCTTATtagaaacccgggggggg
ggggggggaccccccccccccccccccgggtttctgatacgaaaaatgac
gtaatcttgacttaagCACATCAAGAATATCATTGAATTTTTTATGATCA
ATGTTTgccatattgataaaaaatattttttatctttttactaTTCTATA
GCACTGATAATGGAAAGACCGAAaagctttttctaattttaaattgttgt
tgttttttattaataTCATTAAAGTCTTTGAAAACCTTTAGAAATTATAG
GAAAAGCTGTTTGATAATCTACTCGATTTTTCTGTTGAAAGCTGTTCTTG
ATGGTTTATAATTTATcccaacccagctggcacacacaacgttgtttcaa
cgtttatctaatgtgcataacgtccatatgacgttagatgaacgttgaaa
caacgctgagtgccagctgggaatagatattaatttcattaaattacATA
CAAAGTTCTTCTTAATTTAGAGCTTATCATCTTTGATGGATTCTGTCTCC
ATGTTAGATGTCACCAAAACTCAACAAAAAACACAACAAGGACAATATCC
CTCAAATAAACCTCAAACGATAAATTCAAGCTCTCATAAAAAACCACACA
AGGTAAAaattcagatgagatggagtttttataagatactttaatgggtt
taataattggtcatttgaagtaataaaaatgacgcgttctttagaaaaag
taacaaaattgttttattactggtttaACGactaaccaaatcaaataaga
gatTGTAAAAACTTCAGCTTGTCCCTAAAAATCATTATTCGATTTCTTTC
AcgctttttatctttttaatcGTTGATGCTCGAGATAATAAAATGGGGCT
CGTTCCCAGCAAAAAGATtaaccatttttcttttcgttcaACGGTTTAAC
GGCTTTAGTTTAGGGTCAGATTATTGGAGGGATTGACCTTGACGGCCAAT
GGGGATGTGCTGACTGGAGTTTGAGAAATTGACCCATATGATTATTGCTA
AACTTTGGACCCTTTCAgaacaaaaaatcgaaaattgttCCCTTTTTCCC
TGataagtggcaaaaatgacaaACAAACAGTAGACAAAAAACTCGAAAAT
GGAacaatttccaccctgaaaatcgtccaaaataaccaaaattcgacCCT
ATCAGATAAGATACGCATCTTGAAAATAAGTAAATTTggaaccctgtcag
atatcgTTAGAACCTAAAAAAGGGGCCCTGACCAGCGACAcatccccgta
cccaattttccTAAGTGACCCTAagtgatggttttggagtgcaatttttt
attACCAATGGGGGTAAGTAACATCACAAGGCAATTAAATCTTCGGGTTT
TTTCCAACGAGGACGttattttggcctatttttcagTGGGACTGGGGCTC
AAACGGGTGGTGGAGGGTGTATCCATTAAGAAAATGAATCTAGTCTTGCT
AGTCCTAATATTTATCATATCTCTTTTATAGACTTCTGACCAGTATCAAA
GGTTATCCTTACCTAAGCATCATTCATCACGATCGACAAGAACTAAAAGT
AGCATTTCATCTGATTCAGGTAATTTTATTGAACAAAACGTTCACAAGAG
ATCTGACATTTTTTACACTAGTTCATTTGAGATGCAAATATAATTCAAAC
GGGTATACTCGTGAACCTTAAAGTCGTTTATTACCCACTTTATTTCAACA
ATCgtaaaaaagttaaagtaaTTATTCTCAGGTGCCTGATAAACAGGGGG
TTGGGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGGGGGGGGGAGTGGAAGTAGTACCTCTAAATACGA
TATCACtcttaatttaaaaacaaaatctttaatgcATAAATTTCTGACTC
TTTTGTATAAGGGAGTGTGTGGTGCACGTTTGATTCACTTTTACAGGGTA
AAAATTCAGtcgttttagaaaaaaatatatttttttaaaatgacCCAACT
TTTCAACCTTTCCTACATCAGGTTATGACCACACAAACACAAACAACACA
CTGGATGCATCTGAGCAAGtcaaaattgtttattttctcGGCAAATCTGT
TACACCCATACTTAAATCAAGTGACATTGGGTAAGTTGAGCTTTCAGTAT
GAACTGATCACTTGGTCGGTAAAGTATAGTTGTGcactaaaggccggtct
ccactttcgcgtgaaatgagcgaaaactttttagcGTTTTTGTAATGTCa
ctggtcggttgaaaaatgaagcaattccattggtcaaaattgacgtaacg
attgaaaaaagttgaactttcttcaactttttttatgcACTGTAAGAGTG
GAAattcaagcaattttttttgctctcaaagagttgaaatttgacaaaaa
tgcgtaagggtgtgattctaaaagccaatttttcgCCGCCAATTCCCTCA
GTTgataaacccactgcccccggACGGTTGTCTATCACACTAAAGGCTAT
GGTTGGTCATTATAGTGTTtttagaaatatgaaaaattttgaatttatct
tTTTGAAAGCTTGAAATTTTGGCAAGAGATATCCTTGGGATACTTTGGCG
gagattaaatttggcgaattttgcgaattttgccaaaattcgccaaatta
aatcctcgccaaaatttccaaattcggcaattcgccaaattaaatccccg
ccaaaaattgatttttggccgaacgccAAATTAagtccacgccaaaattt
atccacttacaCAAAATATCATAAAGTTTCACCCCAAATATTTCTTTCCT
ACCGTTAAATGATATCTTCTCTTTCATTACAGACTTGGTTACTTAACGTT
ACATGATTTCAAAGAGTTGGTTAACAGACCAGGAAAATATCGATATTTCT
TCAAATCGAAAGATAAAGATTTTGGATTTGTCAGAGAAGAGGTAAATTAT
TtcacgttttgtataagattccacATCCTACACTAAGATTTCTCTgtcat
tttctttcgaaaaagttAGTTGAAAAATGAGATCTGGAAAGTTGGGCAGT
TTCGTGAGATTTTCCGTAACTTTAGAAAAACACTTTTCCACTCAAATTTT
GGTTATTCTGGGAAAAATAACGGACAATCTGGGAAAagtaaaatcataaa
aaaagagaatCTTAGTGCGGGGAGTGAAGTCTTGTCTGCTTGATTGCTGT
GACTTTAATAGTCGGGACCACTACATGGAAAAGGCAACTATtaccttaac
gggaaatatttcccgaacagTAAGGTGGCGAAAACTTCCCAACTGTTTAA
GCCTAAAACTATAAATTGCCGCTAACTACTCTAACTAACTCTTCTCCTTT
ACTCTCTAGTTGCTATATGATGAAGACTTGGTCCCTGGCTATGAAAACAA
AATTGTCTCTTGGATTGAGAAGTTATCAGTAGAGGAGGTTTGAGTCTTTC
TCCGAAGCTATAATTACAATTATTAATTAtaattatttatattttcttac
CAAGAGTGTTTGTTTTAATttatattttggtcaatttaaatttttaacgG
ATTTTACAATTAATGActgataactttatttatttttcttatttttgtaa
TGTATATAGAATAATATTATTAACAATTAATGCAGACTGGTGGCCTTGTT
TGCTCGGAGCTTGTTCGAAGGGTTTAGAGGGGGTAGATAACGACTTTCTG
AAATGAATGTATTTTGGGGCATTTTGGTCCCGATGATATCatcaaaacct
aaaaatttGCGATATCTGCAAGAATTGACCTGATTTGCTCGGTAAAACGA
AAGAATCTCCTAGAACAATGCGAAATTGATGTCAGTTAAGTGAAAATTAC
CCTTCGATGACATCATTATGGATCagtatgacgtcataaaacatatatat
agtgaagatatgtaatatctgtcattttagaaaaagaaaagtattgatat
ataaataactcaaactgataaaaacgaaaaaagttaagggtatttttgtt
aattgtgtgcatttacgatttttttggtatttattattttttaatcattc
cgaaacagagggtaatttagcaaaaagttaaagggaatttaaatagtggt
atgtgaaagaaaaacctaatccaaatgaagatagaagaaaagtaatagtg
gagaaacaatgaattgcaaaaaacttttttgataaatacacTTCCTTAAg
ttcaaaatacatacaaaatggggacaaatacaaaagcaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033951XLOC_033951Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053801-exon-scaffold_234-1491911889:187994..188012TCONS_00053801-exon-scaffold_234-1491911889:187994..188012Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1510915933:187994..188012TCONS_00053801-exon-scaffold_234-1510915933:187994..188012Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1575043694:187994..188012TCONS_00053801-exon-scaffold_234-1575043694:187994..188012Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1491911889:188327..188462TCONS_00053801-exon-scaffold_234-1491911889:188327..188462Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1510915933:188327..188462TCONS_00053801-exon-scaffold_234-1510915933:188327..188462Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1575043694:188327..188462TCONS_00053801-exon-scaffold_234-1575043694:188327..188462Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1491911889:189179..189304TCONS_00053801-exon-scaffold_234-1491911889:189179..189304Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1510915933:189179..189304TCONS_00053801-exon-scaffold_234-1510915933:189179..189304Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1575043694:189179..189304TCONS_00053801-exon-scaffold_234-1575043694:189179..189304Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1491911889:189716..189992TCONS_00053801-exon-scaffold_234-1491911889:189716..189992Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1510915933:189716..189992TCONS_00053801-exon-scaffold_234-1510915933:189716..189992Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1575043694:189716..189992TCONS_00053801-exon-scaffold_234-1575043694:189716..189992Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1491911889:191377..191995TCONS_00053801-exon-scaffold_234-1491911889:191377..191995Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1510915933:191377..191995TCONS_00053801-exon-scaffold_234-1510915933:191377..191995Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1575043694:191377..191995TCONS_00053801-exon-scaffold_234-1575043694:191377..191995Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1491911889:192474..192548TCONS_00053801-exon-scaffold_234-1491911889:192474..192548Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1510915933:192474..192548TCONS_00053801-exon-scaffold_234-1510915933:192474..192548Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1575043694:192474..192548TCONS_00053801-exon-scaffold_234-1575043694:192474..192548Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1491911889:192868..192921TCONS_00053801-exon-scaffold_234-1491911889:192868..192921Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1510915933:192868..192921TCONS_00053801-exon-scaffold_234-1510915933:192868..192921Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1575043694:192868..192921TCONS_00053801-exon-scaffold_234-1575043694:192868..192921Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1491911889:193198..193248TCONS_00053801-exon-scaffold_234-1491911889:193198..193248Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1510915933:193198..193248TCONS_00053801-exon-scaffold_234-1510915933:193198..193248Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1575043694:193198..193248TCONS_00053801-exon-scaffold_234-1575043694:193198..193248Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1491911889:193589..193837TCONS_00053801-exon-scaffold_234-1491911889:193589..193837Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1510915933:193589..193837TCONS_00053801-exon-scaffold_234-1510915933:193589..193837Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1575043694:193589..193837TCONS_00053801-exon-scaffold_234-1575043694:193589..193837Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1491911889:194895..195098TCONS_00053801-exon-scaffold_234-1491911889:194895..195098Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1510915933:194895..195098TCONS_00053801-exon-scaffold_234-1510915933:194895..195098Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1575043694:194895..195098TCONS_00053801-exon-scaffold_234-1575043694:194895..195098Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1491911889:195814..195915TCONS_00053801-exon-scaffold_234-1491911889:195814..195915Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1510915933:195814..195915TCONS_00053801-exon-scaffold_234-1510915933:195814..195915Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1575043694:195814..195915TCONS_00053801-exon-scaffold_234-1575043694:195814..195915Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1491911889:197264..197395TCONS_00053801-exon-scaffold_234-1491911889:197264..197395Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1510915933:197264..197395TCONS_00053801-exon-scaffold_234-1510915933:197264..197395Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1575043694:197264..197395TCONS_00053801-exon-scaffold_234-1575043694:197264..197395Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1491911889:198275..198362TCONS_00053801-exon-scaffold_234-1491911889:198275..198362Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1510915933:198275..198362TCONS_00053801-exon-scaffold_234-1510915933:198275..198362Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1575043694:198275..198362TCONS_00053801-exon-scaffold_234-1575043694:198275..198362Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1491911889:199265..199373TCONS_00053801-exon-scaffold_234-1491911889:199265..199373Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1510915933:199265..199373TCONS_00053801-exon-scaffold_234-1510915933:199265..199373Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1575043694:199265..199373TCONS_00053801-exon-scaffold_234-1575043694:199265..199373Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1491911889:200076..200184TCONS_00053801-exon-scaffold_234-1491911889:200076..200184Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1510915933:200076..200184TCONS_00053801-exon-scaffold_234-1510915933:200076..200184Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1575043694:200076..200184TCONS_00053801-exon-scaffold_234-1575043694:200076..200184Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1491911889:200603..201484TCONS_00053801-exon-scaffold_234-1491911889:200603..201484Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1510915933:200603..201484TCONS_00053801-exon-scaffold_234-1510915933:200603..201484Clytia hemisphaericaexon
TCONS_00053801-exon-scaffold_234-1575043694:200603..201484TCONS_00053801-exon-scaffold_234-1575043694:200603..201484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:187994..201484 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.08385e-07	0	0	0	0	6.87891e-08	1.38148e-09	0	0	0	5.08723e-08	6.82126e-10	0	4.86826e-08	0	2.58948e-10	1.18998	0.00114023	0.00018044	1.66514e-07	1.78998	0.000229081	2.7365	0.101924	0	0.0264613	1.66405e-08	0
Blast
[Close]
BLAST of TCONS_00053801 vs. Swiss-Prot (Human)
Match: DIXC1 (Dixin OS=Homo sapiens GN=DIXDC1 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.851e-23
Identity = 49/123 (39.84%), Postives = 79/123 (64.23%), Query Frame = 2 
Query:   29 QSDSYITWVNSQLGKRDKSRHVKDLSKDMRDGVVFLQLVEVISDSEQQILDHSQLSINDMRYNLNNVLQFLSNNNVRVHHILPKEIIEGNLKTTMRLILALAAHFKPDSFNYNALNNNTSTPL 397
            Q  +Y+ WVN+QL KR   + V+DL +D+RDGV+   L+E+++  +   +  S  +  +M+ N+  VLQF+++  +R+H    K+I++GNLK+ MRL+LALAAHFKP S        ++  PL
Sbjct:   22 QLQAYVAWVNAQLKKRPAVKPVQDLRQDLRDGVILAYLIEIVAGEKLSGVQLSPGNQQEMKNNVEKVLQFVASKKIRMHQTSAKDIVDGNLKSIMRLVLALAAHFKPGSSRTVNQGRDSRAPL 144

HSP 2 Score: 85.8853 bits (211), Expect = 6.017e-17
Identity = 37/91 (40.66%), Postives = 63/91 (69.23%), Query Frame = 2 
Query: 2141 HTNTNNTLDASEQVKIVYFLGKSVTPILKSSDIGLGYLTLHDFKELVNRPGKYRYFFKSKDKDFGFVREELLYDEDLVPGYENKIVSWIEK 2413
            H+ ++ T+ +S   K++YF  +S+TP + +    L  +TL DFK  ++R G +RY FK+ D +FG V+EE+ +D+D +PG+E KIV+W+E+
Sbjct:  589 HSQSSPTV-SSTCTKVLYFTDRSLTPFMVNIPKRLEEVTLKDFKAAIDREGNHRYHFKALDPEFGTVKEEIFHDDDAIPGWEGKIVAWVEE 678
The following BLAST results are available for this feature:
BLAST of TCONS_00053801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DIXC14.851e-2339.84Dixin OS=Homo sapiens GN=DIXDC1 PE=1 SV=2[more]
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