TCONS_00053775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053775
Unique NameTCONS_00053775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053775 ID=TCONS_00053775|Name=TCONS_00053775|organism=Clytia hemisphaerica|type=transcript|length=394bp
GCATATAATCTTGGTAGTTTGTTTCGAATAGTACTGAATCAGCGTACTCA
CGTTGGAGGAGTTGATCAAAACAGTCCAAAGGAGGGACTAACTTGAAATC
GTAGTGttttttttgtacaatgatACTTGATTAATCATGTTGAGATTGCA
TATAATCTTGGTAGTTTGTTTCGAATAGTACTGAATCAGCTTACTCACGT
TGGAGAAGTTGATCAAAACAGTCCAAAGGAGGGACTAACTTGAAATcgta
gtttttttcttttacaatgATACTCGATTAATCAGGTTGAGATTGCATAT
AATCTTGGTAGTTTGTTTCGAATAGTACTGAATCAGCGTACTCACGTTGG
AGAAGTTGATCAAAACAGTCCAAAGGAGGGACTAACTTGAAATG
Run BLAST on NCBI

transcript from alignment at scaffold_233:1170326..1170719

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053775 ID=TCONS_00053775|Name=TCONS_00053775|organism=Clytia hemisphaerica|type=transcript|length=394bp|location=Sequence derived from alignment at scaffold_233:1170326..1170719 (Clytia hemisphaerica)
CATTTCAAGTTAGTCCCTCCTTTGGACTGTTTTGATCAACTTCTCCAACG
TGAGTACGCTGATTCAGTACTATTCGAAACAAACTACCAAGATTATATGC
AATCTCAACCTGATTAATCGAGTATcattgtaaaagaaaaaaactacgAT
TTCAAGTTAGTCCCTCCTTTGGACTGTTTTGATCAACTTCTCCAACGTGA
GTAAGCTGATTCAGTACTATTCGAAACAAACTACCAAGATTATATGCAAT
CTCAACATGATTAATCAAGTatcattgtacaaaaaaaaCACTACGATTTC
AAGTTAGTCCCTCCTTTGGACTGTTTTGATCAACTCCTCCAACGTGAGTA
CGCTGATTCAGTACTATTCGAAACAAACTACCAAGATTATATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033937XLOC_033937Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053775-exon-scaffold_233-1491911889:1170326..1170719TCONS_00053775-exon-scaffold_233-1491911889:1170326..1170719Clytia hemisphaericaexon
TCONS_00053775-exon-scaffold_233-1510915933:1170326..1170719TCONS_00053775-exon-scaffold_233-1510915933:1170326..1170719Clytia hemisphaericaexon
TCONS_00053775-exon-scaffold_233-1575043694:1170326..1170719TCONS_00053775-exon-scaffold_233-1575043694:1170326..1170719Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1170326..1170719 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.575315	0.374015	0	0.212431	2.58615	1.63489	0.246553	0.692459	0.161602	0.20017	0	0	0.382624	0	0	0	0	0.295113	0	0.213322	0	0	0	0	0.823587	0.551274	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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