|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053760 ID=TCONS_00053760|Name=TCONS_00053760|organism=Clytia hemisphaerica|type=transcript|length=882bp
NNCCGAGCTGTGACAATTTGTGTAACAAAATTGCATGATCAACTTTGTCG
AATGCCTTACTGAAGTCCAAATAAATTGTGTCGACATTAATACATTAATA
CCTCTCTCAAGGTATGATAGTATTGTATCATAATGTTCAAGGAGTTGTAC
CAGTATACCGTCTCCATTTATTTCTGGAATCATCTTCTCCACAGCCACTC
CATCCATCTATTCTACACTTGCTTCAAAACATTGTCTCTACGACCCTGCC
AACCACTGCTGTTATGGTGTCCATTCCAGAGACCCCCCAGCGGTTTTCGT
GACGTGATGACGTGATGGGGACTTTTTTcgagcgtgattacgtgatttgg
aaatttttacttcgttattgcgtgatcagaggtcagaacgtgatcgtgat
ttgaaagatttttgaagccgtgatgcgtgatttggtaTTTTTTGAAAGAG
ATGCGTGatcaccaaatttttttgcgattttcgtgatcctgattgaagaa
aaaaacttgcgtgatAGCGTGATCAGACataccgctggggggcctcattc
cagccaagccatattttatcattctacagaaatctccgcttgaaaaatga
aaatattgatacGTGGTCGAGATTACTAAACTTTGCCGAATTAAAACGCG
CGAAATTTTATATGACGTATGACCATGGCTTCTGTTCACTCCGATCATGA
TTCTGATCACgtaatgttttgacttttttaaaccaatgaaatcatttgtt
tataccGCACTAAAGGCCTTTCTAGATTACAGCGCAAAAAAACCTGGGGG
TCAgcatgaactttaaagcctgctgcgggaaagggaaatggttttgaaga
accaaaTATATGCAAAAAGGTTTTAATATCAT Run BLAST on NCBI transcript from alignment at scaffold_233:972019..972900 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053760 ID=TCONS_00053760|Name=TCONS_00053760|organism=Clytia hemisphaerica|type=transcript|length=882bp|location=Sequence derived from alignment at scaffold_233:972019..972900 (Clytia hemisphaerica)
ATGATATTAAAACCTTTTTGCATATAtttggttcttcaaaaccatttccc
tttcccgcagcaggctttaaagttcatgcTGACCCCCAGGTTTTTTTGCG
CTGTAATCTAGAAAGGCCTTTAGTGCggtataaacaaatgatttcattgg
tttaaaaaagtcaaaacattacGTGATCAGAATCATGATCGGAGTGAACA
GAAGCCATGGTCATACGTCATATAAAATTTCGCGCGTTTTAATTCGGCAA
AGTTTAGTAATCTCGACCACgtatcaatattttcatttttcaagcggaga
tttctgtagaatgataaaatatggcttggctggaatgaggccccccagcg
gtatGTCTGATCACGCTatcacgcaagtttttttcttcaatcaggatcac
gaaaatcgcaaaaaaatttggtgatCACGCATCTCTTTCAAAAAAtacca
aatcacgcatcacggcttcaaaaatctttcaaatcacgatcacgttctga
cctctgatcacgcaataacgaagtaaaaatttccaaatcacgtaatcacg
ctcgAAAAAAGTCCCCATCACGTCATCACGTCACGAAAACCGCTGGGGGG
TCTCTGGAATGGACACCATAACAGCAGTGGTTGGCAGGGTCGTAGAGACA
ATGTTTTGAAGCAAGTGTAGAATAGATGGATGGAGTGGCTGTGGAGAAGA
TGATTCCAGAAATAAATGGAGACGGTATACTGGTACAACTCCTTGAACAT
TATGATACAATACTATCATACCTTGAGAGAGGTATTAATGTATTAATGTC
GACACAATTTATTTGGACTTCAGTAAGGCATTCGACAAAGTTGATCATGC
AATTTTGTTACACAAATTGTCACAGCTCGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053760-exon-scaffold_233-1491911889:972019..972900 | TCONS_00053760-exon-scaffold_233-1491911889:972019..972900 | Clytia hemisphaerica | exon |
| TCONS_00053760-exon-scaffold_233-1510915933:972019..972900 | TCONS_00053760-exon-scaffold_233-1510915933:972019..972900 | Clytia hemisphaerica | exon |
| TCONS_00053760-exon-scaffold_233-1575043694:972019..972900 | TCONS_00053760-exon-scaffold_233-1575043694:972019..972900 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:972019..972900 . |
Blast
The following BLAST results are available for this feature:
|
