TCONS_00053757 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053757
Unique NameTCONS_00053757
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length388

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053757 ID=TCONS_00053757|Name=TCONS_00053757|organism=Clytia hemisphaerica|type=transcript|length=388bp
ATTTTGTTGGCACGAAGCCAAGAAGAGAGTCTGATTAAGTCAGAATTCAC
TTTCGTCTCAAGTGAATTTAGATTCGAATCGGAAGAGAGAAGACAGGTGT
CATCAGCAAAGAGGTTTGTTTCGCTATTCAGAATGGCTTCAGGAATGTCA
TTTATATATATTAGAAAAAGTAGAGGCTCTAGGACAGAGCCCTGGGAGAC
TCCGTGTCTGATAGATCGTTTTGAGGAATCATGCCCAGAAATTGAAACAT
ATTGTTTCCTCTCAGTCAGGTAAGATCGAAACCAGAGGTTCGCAACGCCA
CGTATGCCATAGTGATGAAGTTTTGATAGAAGAATTTCATGATCTACTGT
atcgaaaactttttgaagatcAATGAATACCCCGCAAG
Run BLAST on NCBI

protein sequence of TCONS_00053757-protein

>TCONS_00053757-protein ID=TCONS_00053757-protein|Name=TCONS_00053757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
CGVFIDLQKVFDTVDHEILLSKLHHYGIRGVANLWFRSYLTERKQYVSIS
GHDSSKRSIRHGVSQGSVLEPLLFLIYINDIPEAILNSETNLFADDTCLL
SSDSNLNSLETKVNSDLIRLSSWLRANK
Run BLAST on NCBI

transcript from alignment at scaffold_233:915723..916110

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053757 ID=TCONS_00053757|Name=TCONS_00053757|organism=Clytia hemisphaerica|type=transcript|length=388bp|location=Sequence derived from alignment at scaffold_233:915723..916110 (Clytia hemisphaerica)
CTTGCGGGGTATTCATTgatcttcaaaaagttttcgatACAGTAGATCAT
GAAATTCTTCTATCAAAACTTCATCACTATGGCATACGTGGCGTTGCGAA
CCTCTGGTTTCGATCTTACCTGACTGAGAGGAAACAATATGTTTCAATTT
CTGGGCATGATTCCTCAAAACGATCTATCAGACACGGAGTCTCCCAGGGC
TCTGTCCTAGAGCCTCTACTTTTTCTAATATATATAAATGACATTCCTGA
AGCCATTCTGAATAGCGAAACAAACCTCTTTGCTGATGACACCTGTCTTC
TCTCTTCCGATTCGAATCTAAATTCACTTGAGACGAAAGTGAATTCTGAC
TTAATCAGACTCTCTTCTTGGCTTCGTGCCAACAAAAT

Coding sequence (CDS) from alignment at scaffold_233:915723..916110

>TCONS_00053757 ID=TCONS_00053757|Name=TCONS_00053757|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at scaffold_233:915723..916110 (Clytia hemisphaerica)
TGCGGGGTATTCATTgatcttcaaaaagttttcgatACAGTAGATCATGA
AATTCTTCTATCAAAACTTCATCACTATGGCATACGTGGCGTTGCGAACC
TCTGGTTTCGATCTTACCTGACTGAGAGGAAACAATATGTTTCAATTTCT
GGGCATGATTCCTCAAAACGATCTATCAGACACGGAGTCTCCCAGGGCTC
TGTCCTAGAGCCTCTACTTTTTCTAATATATATAAATGACATTCCTGAAG
CCATTCTGAATAGCGAAACAAACCTCTTTGCTGATGACACCTGTCTTCTC
TCTTCCGATTCGAATCTAAATTCACTTGAGACGAAAGTGAATTCTGACTT
AATCAGACTCTCTTCTTGGCTTCGTGCCAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033919XLOC_033919Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053757-proteinTCONS_00053757-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053757-exon-scaffold_233-1491911889:915723..916110TCONS_00053757-exon-scaffold_233-1491911889:915723..916110Clytia hemisphaericaexon
TCONS_00053757-exon-scaffold_233-1510915933:915723..916110TCONS_00053757-exon-scaffold_233-1510915933:915723..916110Clytia hemisphaericaexon
TCONS_00053757-exon-scaffold_233-1575043694:915723..916110TCONS_00053757-exon-scaffold_233-1575043694:915723..916110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:915723..916110 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.397229	0.561059	1.4262	1.42057	0.328207	0	0.292088	0.515127	0.927364	2.46158	2.75932	0.42096	1.0487	0.446219	0.291729	0	0	0.487168	1.18494	0.392362	0.244617	0.771304	0.02981	0.230235	0.429268	0.652737	0	0.574552	0	0.389103
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053757 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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