TCONS_00053756 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053756
Unique NameTCONS_00053756
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053756 ID=TCONS_00053756|Name=TCONS_00053756|organism=Clytia hemisphaerica|type=transcript|length=296bp
GTCTAAAGTTGTTAGGATCGTATGGGGAACCTTTATTTTTATACACGGGT
ATTACTTTTGCTACTTTAAGAGTTGTTATGAACTTGCCTGTCTGTAttga
taaattgaaaattttagcaaggAGTTAAGaaccgattttaagatttttgg
tgGGATGCTGAATGGTCCATTTGCCTTAGGTTTAAGAGTATTGATAATTT
TTACGATTTCCTCAGCTTGTATCTCCTCGAAAAACAGAGAATTTATTGGT
GAATTTACAAGAGTTTGATGAAAGTTCGCTTCCTCATTATTAACAT
Run BLAST on NCBI

transcript from alignment at scaffold_233:914791..915086

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053756 ID=TCONS_00053756|Name=TCONS_00053756|organism=Clytia hemisphaerica|type=transcript|length=296bp|location=Sequence derived from alignment at scaffold_233:914791..915086 (Clytia hemisphaerica)
ATGTTAATAATGAGGAAGCGAACTTTCATCAAACTCTTGTAAATTCACCA
ATAAATTCTCTGTTTTTCGAGGAGATACAAGCTGAGGAAATCGTAAAAAT
TATCAATACTCTTAAACCTAAGGCAAATGGACCATTCAGCATCCcaccaa
aaatcttaaaatcggttCTTAACTccttgctaaaattttcaatttatcaa
TACAGACAGGCAAGTTCATAACAACTCTTAAAGTAGCAAAAGTAATACCC
GTGTATAAAAATAAAGGTTCCCCATACGATCCTAACAACTTTAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033918XLOC_033918Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053756-exon-scaffold_233-1491911889:914791..915086TCONS_00053756-exon-scaffold_233-1491911889:914791..915086Clytia hemisphaericaexon
TCONS_00053756-exon-scaffold_233-1510915933:914791..915086TCONS_00053756-exon-scaffold_233-1510915933:914791..915086Clytia hemisphaericaexon
TCONS_00053756-exon-scaffold_233-1575043694:914791..915086TCONS_00053756-exon-scaffold_233-1575043694:914791..915086Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:914791..915086 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.60626	0	1.88582	3.27958	1.52402	2.38458	2.73595	6.57335	0.342897	1.1279	3.98847	1.38888	0.876495	1.08533	0.461504	0.346169	1.65809	0.509898	0.6542	0	0	1.2446	1.34711	0.685781	7.65098	2.78774	1.11591	1.82568	0.451641	0.281021
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053756 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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