TCONS_00053733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053733
Unique NameTCONS_00053733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053733 ID=TCONS_00053733|Name=TCONS_00053733|organism=Clytia hemisphaerica|type=transcript|length=417bp
TTCCATTTCAACATTATGTTGAGATCTTTCTTTGTCTTCTAAATATTCTG
AAAATGGTACTACATACTTGCTGTCCTCTGAGGGATACTTCTCCCGAATT
TTCCAGACACCGCACGATGAGATTACTTTGCGAACACATTTCCCAACGTG
GTTATCCGTGGTTAGGAACCCAAAATGTACATTGTTTATAGCCCGCATAT
CTGAAActtctgttaccaacttttatTTGGTCTCCTCTCAACCTATTGAG
TGTCGATAATGCAGTCATCAAAACAGGCTTTTCCAAACAAACCATCTTGT
AGCCTTCTGATTCCAGTGATGCATTTCTGACCTAAAACGAGAAATGATTT
AtcgttttttaaatgtttaaagtcTCACCCTCAGAGATCTTTCTACAGAT
TTTTCTATATTATCGCC
Run BLAST on NCBI

transcript from alignment at scaffold_233:600294..600710

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053733 ID=TCONS_00053733|Name=TCONS_00053733|organism=Clytia hemisphaerica|type=transcript|length=417bp|location=Sequence derived from alignment at scaffold_233:600294..600710 (Clytia hemisphaerica)
GGCGATAATATAGAAAAATCTGTAGAAAGATCTCTGAGGGTGAgacttta
aacatttaaaaaacgaTAAATCATTTCTCGTTTTAGGTCAGAAATGCATC
ACTGGAATCAGAAGGCTACAAGATGGTTTGTTTGGAAAAGCCTGTTTTGA
TGACTGCATTATCGACACTCAATAGGTTGAGAGGAGACCAAataaaagtt
ggtaacagaagTTTCAGATATGCGGGCTATAAACAATGTACATTTTGGGT
TCCTAACCACGGATAACCACGTTGGGAAATGTGTTCGCAAAGTAATCTCA
TCGTGCGGTGTCTGGAAAATTCGGGAGAAGTATCCCTCAGAGGACAGCAA
GTATGTAGTACCATTTTCAGAATATTTAGAAGACAAAGAAAGATCTCAAC
ATAATGTTGAAATGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033896XLOC_033896Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053733-exon-scaffold_233-1491911889:600294..600710TCONS_00053733-exon-scaffold_233-1491911889:600294..600710Clytia hemisphaericaexon
TCONS_00053733-exon-scaffold_233-1510915933:600294..600710TCONS_00053733-exon-scaffold_233-1510915933:600294..600710Clytia hemisphaericaexon
TCONS_00053733-exon-scaffold_233-1575043694:600294..600710TCONS_00053733-exon-scaffold_233-1575043694:600294..600710Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:600294..600710 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.363526	0.438579	0.205296	0.143733	0.178036	0.691225	0.113596	0	0	0.096853	0.103938	0	0.524961	0.362631	0	0	0.241316	0.391135	0	0	0	0.23388	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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