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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053727 ID=TCONS_00053727|Name=TCONS_00053727|organism=Clytia hemisphaerica|type=transcript|length=1583bp
cgtcattaaacCAAATAATGATAGCGAGACTGCTGACGATTTTGATACTG
ACCGCGCGAAACTTCAGTTAAATCTCGATCCAACGCCCGCATTGACTGTC
AATTCACCCTCACCACCACATCTACCGCCCAACTTGGAATTGCCTTCACC
TGGTATAATAAATTCTTACACCGAAAATCTTCCTTCACCAAACGTTAATA
CTTTCTATCAAGCAGGATCCATATTACGGCAAAGCAAATATGAAATTTCT
ACACGGACCTCACAACTTGTTGAAAACACACCGTCTCGTTTACATACCTT
TTTCACGCACGTTCTGCGCAGGCgcaaacatcatcatcatcagaaTTCGG
ACGGGAGGAGAGGATCCAAAATCAATCTTCACAAACTCTTTCATTTTGCT
TCATCACCTAAAAACACATCTTTTCATCCACCGACATCCTCTTCGACACA
CGATTCGGCCGCACATGATTCTCCAGCGGCTGATTCGCCCGCTCAAACTG
AGCACGCGCCGTCAAAACGTAGATTCACGTTTGGGAAAACATTGAAAATC
TCCCGTAATGAGTATTTAAACCGTAGGAAAAGCATGCCGATTCAAATGTA
CCGGAGACGCGGTAGTAGCACTACGGGAAGCCCGATAAAGGAGCCGGACG
CACCCCATTTTCCGACATTACATACGAAATCTTATTCGGCATTAAGCACA
ATagatcgaacggaatcgaaaaACACGTTTAAAAATCGAAAGAAAACAAA
GTCACATACTGCATTGAATAATTTGAACCAATCACAGCCGAGCTTAACAT
CGAAGAGCCAATCAGATTTAAGCAGTAAAACGAAATCACAAAGCTCATTG
AATTGTTTTAGCCAATTGGAATCGAAGAATGCTATAAAGAGCCAATCAGA
TTTAAGTAATGCTAATTTGACGCCtattggaaaaaataagaaatcaagGT
CATTTGTTGATCTTTTTCGTAAAAAGGTTTCACATTAGAATAATTTATAA
ATTTACTAGAGGTGAGAAAATTTTGCGTGAAGAACTCTTAGCACGAGTAC
ATGGTTAGTCttgactacaatcatggacaacaAAATTGAGTTAGAGGGGA
TGTCCCTTAGGAATTTTAAGCACCACAAATGAATTTTAAGCGAGATAAAC
TACAGtttgaaagtagagttttaacatgagcctagaagccaccgcaCCTC
TCTaagatcgaaatattcaatgaaagaaagtggaagtgctaaaaaagcaa
ttctcgctcgaactttaaattctgaaaaacattaaaatacactaaaatct
caatatatttcgaccatgattgtagattttAGAGCTGACTGTCATTTATC
CTAATCTTAccagttcgaattacagagagatttaaTGTTTTCTAAGAGGG
TTTACCCTTGGCAGAGACTGGTTATTatttcgaataatagaaagattcga
atgaataaagttcgaataagcgagagtcgaCTGTATTCTAAACCATTCTA
ATGTGCATTTTTTTcgttgtaaaattttattttctttgcttCAGACTCTG
TGATTATATTAGGGAAGGAAATAATTTCAGGGG Run BLAST on NCBI protein sequence of TCONS_00053727-protein >TCONS_00053727-protein ID=TCONS_00053727-protein|Name=TCONS_00053727-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
VIKPNNDSETADDFDTDRAKLQLNLDPTPALTVNSPSPPHLPPNLELPSP
GIINSYTENLPSPNVNTFYQAGSILRQSKYEISTRTSQLVENTPSRLHTF
FTHVLRRRKHHHHQNSDGRRGSKINLHKLFHFASSPKNTSFHPPTSSSTH
DSAAHDSPAADSPAQTEHAPSKRRFTFGKTLKISRNEYLNRRKSMPIQMY
RRRGSSTTGSPIKEPDAPHFPTLHTKSYSALSTIDRTESKNTFKNRKKTK
SHTALNNLNQSQPSLTSKSQSDLSSKTKSQSSLNCFSQLESKNAIKSQSD
LSNANLTPIGKNKKSRSFVDLFRKKVSH Run BLAST on NCBI transcript from alignment at scaffold_233:436249..437831 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053727 ID=TCONS_00053727|Name=TCONS_00053727|organism=Clytia hemisphaerica|type=transcript|length=1583bp|location=Sequence derived from alignment at scaffold_233:436249..437831 (Clytia hemisphaerica)
CCCCTGAAATTATTTCCTTCCCTAATATAATCACAGAGTCTGaagcaaag
aaaataaaattttacaacgAAAAAAATGCACATTAGAATGGTTTAGAATA
CAGtcgactctcgcttattcgaactttattcattcgaatctttctattat
tcgaaatAATAACCAGTCTCTGCCAAGGGTAAACCCTCTTAGAAAACAtt
aaatctctctgtaattcgaactggTAAGATTAGGATAAATGACAGTCAGC
TCTaaaatctacaatcatggtcgaaatatattgagattttagtgtatttt
aatgtttttcagaatttaaagttcgagcgagaattgcttttttagcactt
ccactttctttcattgaatatttcgatcttAGAGAGGtgcggtggcttct
aggctcatgttaaaactctactttcaaaCTGTAGTTTATCTCGCTTAAAA
TTCATTTGTGGTGCTTAAAATTCCTAAGGGACATCCCCTCTAACTCAATT
TtgttgtccatgattgtagtcaaGACTAACCATGTACTCGTGCTAAGAGT
TCTTCACGCAAAATTTTCTCACCTCTAGTAAATTTATAAATTATTCTAAT
GTGAAACCTTTTTACGAAAAAGATCAACAAATGACcttgatttcttattt
tttccaataGGCGTCAAATTAGCATTACTTAAATCTGATTGGCTCTTTAT
AGCATTCTTCGATTCCAATTGGCTAAAACAATTCAATGAGCTTTGTGATT
TCGTTTTACTGCTTAAATCTGATTGGCTCTTCGATGTTAAGCTCGGCTGT
GATTGGTTCAAATTATTCAATGCAGTATGTGACTTTGTTTTCTTTCGATT
TTTAAACGTGTttttcgattccgttcgatctATTGTGCTTAATGCCGAAT
AAGATTTCGTATGTAATGTCGGAAAATGGGGTGCGTCCGGCTCCTTTATC
GGGCTTCCCGTAGTGCTACTACCGCGTCTCCGGTACATTTGAATCGGCAT
GCTTTTCCTACGGTTTAAATACTCATTACGGGAGATTTTCAATGTTTTCC
CAAACGTGAATCTACGTTTTGACGGCGCGTGCTCAGTTTGAGCGGGCGAA
TCAGCCGCTGGAGAATCATGTGCGGCCGAATCGTGTGTCGAAGAGGATGT
CGGTGGATGAAAAGATGTGTTTTTAGGTGATGAAGCAAAATGAAAGAGTT
TGTGAAGATTGATTTTGGATCCTCTCCTCCCGTCCGAAttctgatgatga
tgatgtttgcGCCTGCGCAGAACGTGCGTGAAAAAGGTATGTAAACGAGA
CGGTGTGTTTTCAACAAGTTGTGAGGTCCGTGTAGAAATTTCATATTTGC
TTTGCCGTAATATGGATCCTGCTTGATAGAAAGTATTAACGTTTGGTGAA
GGAAGATTTTCGGTGTAAGAATTTATTATACCAGGTGAAGGCAATTCCAA
GTTGGGCGGTAGATGTGGTGGTGAGGGTGAATTGACAGTCAATGCGGGCG
TTGGATCGAGATTTAACTGAAGTTTCGCGCGGTCAGTATCAAAATCGTCA
GCAGTCTCGCTATCATTATTTGgtttaatgacg Coding sequence (CDS) from alignment at scaffold_233:436249..437831 >TCONS_00053727 ID=TCONS_00053727|Name=TCONS_00053727|organism=Clytia hemisphaerica|type=CDS|length=987bp|location=Sequence derived from alignment at scaffold_233:436249..437831 (Clytia hemisphaerica)
CTAATGTGAAACCTTTTTACGAAAAAGATCAACAAATGACcttgatttct
tattttttccaataGGCGTCAAATTAGCATTACTTAAATCTGATTGGCTC
TTTATAGCATTCTTCGATTCCAATTGGCTAAAACAATTCAATGAGCTTTG
TGATTTCGTTTTACTGCTTAAATCTGATTGGCTCTTCGATGTTAAGCTCG
GCTGTGATTGGTTCAAATTATTCAATGCAGTATGTGACTTTGTTTTCTTT
CGATTTTTAAACGTGTttttcgattccgttcgatctATTGTGCTTAATGC
CGAATAAGATTTCGTATGTAATGTCGGAAAATGGGGTGCGTCCGGCTCCT
TTATCGGGCTTCCCGTAGTGCTACTACCGCGTCTCCGGTACATTTGAATC
GGCATGCTTTTCCTACGGTTTAAATACTCATTACGGGAGATTTTCAATGT
TTTCCCAAACGTGAATCTACGTTTTGACGGCGCGTGCTCAGTTTGAGCGG
GCGAATCAGCCGCTGGAGAATCATGTGCGGCCGAATCGTGTGTCGAAGAG
GATGTCGGTGGATGAAAAGATGTGTTTTTAGGTGATGAAGCAAAATGAAA
GAGTTTGTGAAGATTGATTTTGGATCCTCTCCTCCCGTCCGAAttctgat
gatgatgatgtttgcGCCTGCGCAGAACGTGCGTGAAAAAGGTATGTAAA
CGAGACGGTGTGTTTTCAACAAGTTGTGAGGTCCGTGTAGAAATTTCATA
TTTGCTTTGCCGTAATATGGATCCTGCTTGATAGAAAGTATTAACGTTTG
GTGAAGGAAGATTTTCGGTGTAAGAATTTATTATACCAGGTGAAGGCAAT
TCCAAGTTGGGCGGTAGATGTGGTGGTGAGGGTGAATTGACAGTCAATGC
GGGCGTTGGATCGAGATTTAACTGAAGTTTCGCGCGGTCAGTATCAAAAT
CGTCAGCAGTCTCGCTATCATTATTTGgtttaatgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053727-exon-scaffold_233-1491911889:436249..437831 | TCONS_00053727-exon-scaffold_233-1491911889:436249..437831 | Clytia hemisphaerica | exon |
| TCONS_00053727-exon-scaffold_233-1510915933:436249..437831 | TCONS_00053727-exon-scaffold_233-1510915933:436249..437831 | Clytia hemisphaerica | exon |
| TCONS_00053727-exon-scaffold_233-1575043694:436249..437831 | TCONS_00053727-exon-scaffold_233-1575043694:436249..437831 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:436249..437831 . |
Blast
The following BLAST results are available for this feature:
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