TCONS_00053717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053717
Unique NameTCONS_00053717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053717 ID=TCONS_00053717|Name=TCONS_00053717|organism=Clytia hemisphaerica|type=transcript|length=338bp
CTGCTCCTTCGAAAAACTGGTCAGGTATATTGCCCAAAGGCTTCTGGACT
TTTTCTTGCACAGCTTTTTGAGCACCTTCAGTTTCTTGTTTTttattaac
ttttgttttcaaatgttCAAAATGATTTCTCAGGGCTTGAACTTCATTTT
CCAGCTTGGCTTTTTGAATTTGGGTTTGATCTTTCAACTCAACTTTCAAG
CcttctattccatttttaagggCTTGAACTTCCTTTTCTAATTTGTCATT
TTGAGCTTTCAAGCCGCCCATCTCATTTTCAAGGGCtttgaattcatttt
tcagACCAGCTTCAGCGACTGTTTTCTCGAGAGCTTGA
Run BLAST on NCBI

protein sequence of TCONS_00053717-protein

>TCONS_00053717-protein ID=TCONS_00053717-protein|Name=TCONS_00053717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
QALEKTVAEAGLKNEFKALENEMGGLKAQNDKLEKEVQALKNGIEGLKVE
LKDQTQIQKAKLENEVQALRNHFEHLKTKVNKKQETEGAQKAVQEKVQKP
LGNIPDQFFEGA
Run BLAST on NCBI

transcript from alignment at scaffold_233:113134..113471

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053717 ID=TCONS_00053717|Name=TCONS_00053717|organism=Clytia hemisphaerica|type=transcript|length=338bp|location=Sequence derived from alignment at scaffold_233:113134..113471 (Clytia hemisphaerica)
TCAAGCTCTCGAGAAAACAGTCGCTGAAGCTGGTctgaaaaatgaattca
aaGCCCTTGAAAATGAGATGGGCGGCTTGAAAGCTCAAAATGACAAATTA
GAAAAGGAAGTTCAAGcccttaaaaatggaatagaagGCTTGAAAGTTGA
GTTGAAAGATCAAACCCAAATTCAAAAAGCCAAGCTGGAAAATGAAGTTC
AAGCCCTGAGAAATCATTTTGaacatttgaaaacaaaagttaataaAAAA
CAAGAAACTGAAGGTGCTCAAAAAGCTGTGCAAGAAAAAGTCCAGAAGCC
TTTGGGCAATATACCTGACCAGTTTTTCGAAGGAGCAG

Coding sequence (CDS) from alignment at scaffold_233:113134..113471

>TCONS_00053717 ID=TCONS_00053717|Name=TCONS_00053717|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_233:113134..113471 (Clytia hemisphaerica)
CAAGCTCTCGAGAAAACAGTCGCTGAAGCTGGTctgaaaaatgaattcaa
aGCCCTTGAAAATGAGATGGGCGGCTTGAAAGCTCAAAATGACAAATTAG
AAAAGGAAGTTCAAGcccttaaaaatggaatagaagGCTTGAAAGTTGAG
TTGAAAGATCAAACCCAAATTCAAAAAGCCAAGCTGGAAAATGAAGTTCA
AGCCCTGAGAAATCATTTTGaacatttgaaaacaaaagttaataaAAAAC
AAGAAACTGAAGGTGCTCAAAAAGCTGTGCAAGAAAAAGTCCAGAAGCCT
TTGGGCAATATACCTGACCAGTTTTTCGAAGGAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033880XLOC_033880Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053717-proteinTCONS_00053717-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053717-exon-scaffold_233-1491911889:113134..113471TCONS_00053717-exon-scaffold_233-1491911889:113134..113471Clytia hemisphaericaexon
TCONS_00053717-exon-scaffold_233-1510915933:113134..113471TCONS_00053717-exon-scaffold_233-1510915933:113134..113471Clytia hemisphaericaexon
TCONS_00053717-exon-scaffold_233-1575043694:113134..113471TCONS_00053717-exon-scaffold_233-1575043694:113134..113471Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:113134..113471 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.268186	0	0	0	0	3.88938	1.32407	0.86684	0.574127	1.11452	0.366322	0.731625	0.56985	0.156165	0	0.206455	0	0	0	0	0	0	0	1.47638	1.84468	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top