TCONS_00053712 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053712
Unique NameTCONS_00053712
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053712 ID=TCONS_00053712|Name=TCONS_00053712|organism=Clytia hemisphaerica|type=transcript|length=355bp
TTTTGATCTTGTACTTGTTTTTGAATATTATCCCGAAATATTTTGCAGAA
AAGACCTTTTCACCCAATCCAGGATGAAAAATAACCAACCAATTTCCTCA
AACGAGTGGTGCAACGCTCCTTAAATTTTCAAGGTTCAGGTGCAACACTT
AATAGAGGGTTGCCCTCTTCTAAAAGTAAAAATCagagaatgggctcttc
cagaaaaaattcgttcatggggggtggaggatgaattgtccaggggtatt
gaaaaaataccaaaaattgctatgtccaggggtaattttttatgtccacg
gggttgatttgatgtttgtccaggggtataacccgtgtccagggggttaa
aaatc
Run BLAST on NCBI

transcript from alignment at scaffold_233:15278..15632

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053712 ID=TCONS_00053712|Name=TCONS_00053712|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at scaffold_233:15278..15632 (Clytia hemisphaerica)
gatttttaaccccctggacacgggttatacccctggacaaacatcaaatc
aaccccgtggacataaaaaattacccctggacatagcaatttttggtatt
ttttcaatacccctggacaattcatcctccaccccccatgaacgaatttt
ttctggaagagcccattctctGATTTTTACTTTTAGAAGAGGGCAACCCT
CTATTAAGTGTTGCACCTGAACCTTGAAAATTTAAGGAGCGTTGCACCAC
TCGTTTGAGGAAATTGGTTGGTTATTTTTCATCCTGGATTGGGTGAAAAG
GTCTTTTCTGCAAAATATTTCGGGATAATATTCAAAAACAAGTACAAGAT
CAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033875XLOC_033875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053712-exon-scaffold_233-1491911889:15278..15632TCONS_00053712-exon-scaffold_233-1491911889:15278..15632Clytia hemisphaericaexon
TCONS_00053712-exon-scaffold_233-1510915933:15278..15632TCONS_00053712-exon-scaffold_233-1510915933:15278..15632Clytia hemisphaericaexon
TCONS_00053712-exon-scaffold_233-1575043694:15278..15632TCONS_00053712-exon-scaffold_233-1575043694:15278..15632Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:15278..15632 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.307831	1.57624	2.57909	3.925	1.3018	0.682382	0.412084	1.37216	0.441911	0.283207	0	0.174333	0.17759	0	0.48198	0.473564	0	0.194887	0	0.605745	2.42319	0.834044	0.701397	0.608543	0.579568	0.827641	2.37737	2.17449	1.00957	2.33149
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053712 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top