TCONS_00053691 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053691
Unique NameTCONS_00053691
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4012

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053691 ID=TCONS_00053691|Name=TCONS_00053691|organism=Clytia hemisphaerica|type=transcript|length=4012bp
CTGATGGAACTGCTTGCTCGAGATGTGATGGTCTCGTATCACTGAGACCT
CAAAAAATAAAGGATTTATGCATAATATTGAACAAAATGAGCAAAGATAC
GAACGAGGGAAATAACAATACAACCAATGGACATAAAGGAGAAGAATCTG
ATGAAAAACAAGTACAACCAACATCATGGACAGAACTTGAAATTGTCGGT
AGCACACGAAATCTAAGTCCAACTTTATGGACTTTCACGCACCTCACTGC
CTTGTATCTTCGTGACAATGGGATTTCTAGAATACCTCCAGAAGTTTCAC
GACTGAAGGGCCTCACTAAGCTTGATTTATCAAAGAACAAGATCAGAAGT
TTACCTACTGAAATTGGTGACATGATTGAACTCAATGATTTGAATTTATC
ATACAACGCTCTGCGAGTATTACCAAATGAAATTGGACGTTTATTCAAGT
TGAAAAGCTTAGGGCTGCAAGGAAATCCTCTTCCCTCAGAAATAATGAAT
CTAGGTTTAGATAATTTGTTGATGTATTTGCTTGGGAATTATACTGtttG
TCCACGTCCACCAAACAGAGAATGGCTACCTGTTACGCAAAATACGACAA
AGAACGGTTTGTTCAAATGACTTGTccttgaaaaagatttttataagaaa
tttttctaTTGCTATCTTATTTCTTACCCATCAATAGTTGCTTGATTAAA
ATGAAATTCATTCATGATCCAAAATAATAGTGTTATGTCCTCTAGCATTT
AGTAAGTAAACACACAGAAAAGATCTTTTCCCTAGGGTAATTCGACCCAG
CATTAATCCATTAGTCCATAAATCATATCATACAACTCTGTACAACTCCC
TTTTTAGGAAGCTTCACGGTCATGTCATATAATGTCTTATGTGAGAAATA
CACTACAAGGCAATTGTATGGCTACTGCCCTCAGTGGGCATTGGCATGGG
ATTACAGAAAGAGTGCGATCTTAAAAGAAATCTTGCAATTCAATGCTGAT
GTATTGAGTTTACAGGAAATTGGAACAGAAGTATTTTGGAATTTCTTCCT
GCCAGAATTAAAAAAGAACGGCTATGAAGGGATCTTCAATCCCAAGTCTC
GAGCGAAAACCATGTCTGAAGAAGATCGTCGATATGTTGATGGATGTGCT
ATTTTCTGGAACTCTGCTAAATTCACATTGTTGAAAGAACATCTTGTTGA
GTTCAACCAGCTAGCAGCTGCGAATTGTGAAAATGCAGATGATATGTTAA
ACCGGGTGATGCAAAGAGATAACATTTGTATGATGGCTTTATTGGAGACA
ACAGAACCAGTAGCAGAGCTGAATAACAGCAAAGGGAAGCTAGTTGTCAC
CAATGCCCACATCCATTGGGATCCAGAATTTAAGGatgtaaaagttattc
aatcCGTCATGTTGATGAGAGAGCTCAAGAACTTCCTGGAAGAATCTAAC
GGAGGAAAAGCGGGCTTGAAAACACCATTTGTCATTTGCGCTGACATGAA
TTCCTTGGTGGACTCTGGCGCCATCGAATATgttgaaaaagggaaaatcc
CAATCAATCATCCAGATTTCAAGACCATGAAATATGGGGGTTTCCTCTCA
AAGCACACAgataaggagaagaaaaatggGGAGATGGTGACGCACCCTTT
CAAGTTGAGTAGAGTTGCAAAAGAGAATGAACTGCCATTCACTAATTATA
CATATGACTTTGAAGGAGTGTTAGATTATATCTTCTATACTAAAGATGAG
TTGACAATCCTAGGTGAACTTGGTCCTGTTAACTTGGAATATCTGAAGAA
AAATAAAGTCATTGGGTTTCCACATCCTCATTTCCCGTCAGATCATATTT
GTTTGGTTGTCGAGTTTGATTTCAAATTGCCTTCCAGGTAGTTTGGACTC
TCTTCAACCATCAATTATCTAAAACGGTGAATTGTtatgtgaattttttt
aacgtGGAATACTTCTTCCAGATTTTACATCTTGTCGGATTTGAGCACAT
TTCTTCCAACCTACATTTCCCACAACCCTGCATTTTTCTTTATGGATGAC
ATGGCTGGCAAAACTGAGATCAAAGTGTACTGGTtgcatcaaatttttct
tttgcttgaCTCGTGGAAATCGGTTTTAACAATTATTTGTGAATTTCATC
CCCTGCCCCCATTATTATATATGATGTTTAGTTGTTTTTGCTTTGTTTAA
AAACATATacaacaaattttttcattCCTAAATATATGAAAGATGTTAGG
AAATTAAGATAAGTgccaaaaatgtaaaatttattcAAGTTTCTTATAAA
TGTGgttattatatattattttttagatttttttgtcaCATTTTTATTGA
TTCAAAACTAAATGATATTTTCCTAGCATTATTAGATTCTAGATCTTCGT
TGAACGAATAACCACGTTCActaatctcataaaaaaagaaactgtgatac
tttttttctctcaaactaCCTAGTGAACTACCTACCTAGTAAATTAGTTC
TTTTTTGGTACAAAACTTTCTCACTGATATCattattgataaatttttaa
aaacacctttttattgattttgaattttccatTCTGTTATCAAGGGACCT
TcgttaaaattagaaatgaagCAACATTTaggaagaaatttattttctgG
ATAGAATTATGGTAAAAAGCCAATAATATgcataattttgattttaccaT
CTTGTTAATAATTATAACTACTGTAATAGTAATAGATCTTTTAAGAAATC
CTGTTTAGATTTTTAGAAAGTGACTATTTTTTCTTGTACAAAGTATAATA
ATATGGTGTGTAGGGATGTTAAGCATATTGTATCTattaaaaagaacatt
ttttaagctttttccaAACAAACCCAAAGTTTTCACAGATTGTTCTGCTG
ATGAGATTTTCATTTGTCAATACTTTGACGACGTAAAGAGTTTTAAGTTC
ATATGAATTACAAAGTCTGGAAGATTTCGCACGAAAAGGTAAGGTAGCAT
TTTTATGGCATGTGAAAAGATAATGagtggaaaaatattttgtcattaGA
AGAAGTTTGAGATTGAGAACtgtacacttttttatataaattgtGGAAAA
ACTCACTTTTAAGCATTTCAAATCTTGACtattcaccttttgtcaaaata
CGACTGGATAAGAAAAGATAATTCCAAACACCTGTGAATAAGATTGGCTT
TTATTATGTAAAATACTACtgcaaagattttttttatcaaactctaatgt
ttttggtcatttataatattttttgtgcACATGTGTATTAAAGCGAAACC
ATAATTGTATTTGTGTAATATTGAACACCTATCACGCAAGAAGCAATCTA
TTTTATTGACATTATAGTCAATGTACTGATAATACCACAGATCGTAATTT
ACTTTAACTAAGGATTTTTTAAAGGTAATCTAAAATAATGTTTGTCATTT
CTTGAGATTTTTGttgtggtttttttttttggcgtgaGATCTAGAACTTT
GAATTATGCGATTTTTTTAAAACGAGATCTTCTAAAGGATGAAAACCCAG
GTTTTTCTTAAATTtactttacattttattttaaaactaatTCTTATTTA
TGTATAGCAAGTTAGAAGCAGTAGTCGTCAATTTTCACCTTAGCCTAGCA
CTTTTATTTGTTGACAACCTTTTTAATCAATCTTATCAATGACGTTCAGA
ACGAAATGTCATTTTGAAATGAATAAGTAAATAATAGTGATCATTGAACT
ACCTTTGTTTGTGgaaattgatataaaaataaCTTCGAACCATCAGAACT
AGTAACTCAAAGAGTCGAGAGCACTAGGTGAAATTGACAAACTGCTATGA
TTTTATCCcagctttttttaaaaaaaataaagagacAGGTTGATGTATTT
GTTTACTTCTGGTCATTGCAGAAGATGATATGAAAacagttgaaaaagaa
aaccacataaagattttaaacttaaaattctTTTATTCTATCATATTGTA
GTTCTTTATTTC
Run BLAST on NCBI

transcript from alignment at scaffold_233:1025926..1036291-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053691 ID=TCONS_00053691|Name=TCONS_00053691|organism=Clytia hemisphaerica|type=transcript|length=10366bp|location=Sequence derived from alignment at scaffold_233:1025926..1036291- (Clytia hemisphaerica)
CTGATGGAACTGCTTGCTCGAGATGTGATGGTCTCGTATCACTGAGACCT
CAAAAAATAAAGGATTTATGCATAATATTGAACAAAATGAGCAAAGATAC
GAACGAGGGAAATAACAATACAACCAATGGACATAAAGGAGAAGAATCTG
ATGAAAAACAAGTACAACCAACATCATGGACAGAACTTGAAATTGTCGGT
AGCACACGAAATCTAAGTCCAACTTTATGGACTTTCACGCACCTCACTGC
CTTGTATCTTCGTGACAATGGGATTTCTAGAATACCTCCAGAAGTTTCAC
GACTGAAGGGCCTCACTAAGCTTGATTTATCAAAGAACAAGATCAGAAGT
TTACCTACTGAAATTGGTGACATGATTGAACTCAATGATTTGAATTTATC
ATACAACGCTCTGCGAGTATTACCAAATGAAATTGGACGTTTATTCAAGT
TGAAAAGCTTAGGGCTGCAAGGAAATCCTCTTCCCTCAGAAATAATGAAT
CTAGGTTTAGATAATTTGTTGATGTATTTGCTTGGGAATTATACTGGTAA
GCTAGCTAGGTCTTTTTTTGTGATCTCAAATAGAGGCAATCAATTAATTA
TCCCCTTCATTTTAACTGTCCCGTTATTACCGGTTGGCAAACAATATCAT
CCACCAGGATGCTTTGTCTCTTATGTTCCCCCTATTTTCTACTTTCCTAT
CTTCTATCCTGCTGATTTTCTGACTTTCTCAAGTGTTCTATAACTGTTTT
CTAAGTATTTTTTCTGAAATTTGCCTGTACCGGTGGTCTCCGACCCCGGA
TCAAACCACCAAATACAAGCAACCTTGGTTTACAAACCCAATGCCGCTTG
CGCCAACAAGACACGACGAAGATCCATCAATCACAAATATACTTATAGCG
TGTAATTTGCAGACCTTAATTAAAAAAGCTCCCAACCCTACCAGTGCCCC
TACAAGGATCCCTACAGTACAGGATCCTAAGGTAAGTCTCAGGGTACGAA
GTGCCCCTAAGAAGGCCTTCAACCTTATTTTGTGACTCTCGAGCTCCATC
CCTAACCCTAACTGATGATAACCGAACCACCGTCTAGGTCCGCAGATTGA
AAAACTTCACTTGCATTCTGCCTGGTGGATGATATCGTCTGCCAACCGTT
ATTACCCAAGATTACTATATATAAAAATAAAAAGAAGGGGACATCCCTAA
AAATGGTGTTATTTTTATAAATTTGGATTTACATGGAGACGATTTTGTAG
ATAAAATGGCTGGCAAACCATATTATACTCCAGGATGCAAGTCACAGATT
GTTGATGTATGAGAAATGTGTCTTTTTGAAAGGAAAACTTTTTAAACGAA
GTAATCAATACTGAAAAAACTAATTGGCAATGCTTCCCACAAAGATTACA
AAATCAAAACAACTTTTTGCATGCAAGGAATTTTTTAGTATGCCTATTTG
TCGTGAACCAAAAATGATAAAAAGAACCCAGTTTCCTTTTGTTTGATGTG
ACCACCATACCGCCAACAACTCTGCCTTGCCGTCTCGCCGATCAAAATGA
AAATAGGTAGTCCTGTGTGTGTGTGGCTTCTTAGCGCCTAGAGCGTGTGC
TTACAATGAATAATAAGGACAGGGAAACCAGTTCCTAAGCTAGTCTGAGA
AAACCTCTTAGTTGTATGCTTGACTCCCAAGGCTGTAAGTAAGTGCGCAA
TTACACAGTTAAAATTTACGCAAACGCCCGTGTGCAATCTGGTGCAACTG
CACGCTTATGATCCCGCCCGGGTTGAGATTGCTTGAGCAGATTATAGAGG
GTTCAGATTTTTCAAAATTGGGCGAATACATGGTCAAACAGGCAAAAGTT
TCCAACATGATCATTTTCTACAATAAATTTTGAGTAAGATGTCCAAGGCT
TTCCAATTTCAACGAAGCGATCAGAAGCAAAAAAAGGTTTTTTAAATGAT
AAGACTACAATCAACGCCAAAATATTTGGAACAAAAGGGGAATTCCCTCA
AAACTTCAAAAACCGCAAGTGATTTGTGTTTTGAAGTACAGTTTGGAAGT
AGAGTTTTAACTCTGACAGCTACCTTAAGGGCAGAAATATTCGCGAGAAG
AAATTTTCGCGGAATTTAATTTCGCGAATCAGAGCTTCAAAATGGCAAAT
TTCGCGGAATTTAATTTCGCGAATGGGCCGATTTCAAAAGTTTCACGGAA
TTTAATTTCGCGGTTGAGGGAATTATTTGTCTACGAAAAGCCCTATTTTG
CCCTAAAAAGACCAGTTTTAGGGGGGATTTTTTTAATTGTGAGAATATTT
ATGTTTCGCGGAATTTAATTTCGCGAATCAGAGCTTCAAAATGGCGAATT
TCGCGGAATTTAATTTCGCGAATCAGAGCTTCAAAATGGCGAATTTCGCG
GAATTTAATTTCGCGAATCAGAGCTTCAAAATGGCGAATTTCGCGGAATT
TAATTTCGCGAATCAGAGCTTCAAAATGGCGAATTTCGCGGAATTTAATT
TCGCGAATCAGAGCTTCAAAATGGCGAATTTCGCGGAATTTAATTTCGCG
AATCAGAGCTTCAAAATGGCGAATTTCGCGGAATTTAATTTCGCGAATCA
GAGCTTCAAAATGGCGAATTTCGCGGAATTTAATTTCGCGAATCAGAGCT
TCAAAATGGCGAATTTCGCGGAATTTAATTTCGCGAATCAGAGCTTCAAA
ATGGCGAATTTCGCGGAATTTAATTTCGCGAATCAGAGCTTCAAAATGGC
GAATTTCGCGGAATTTAATTTCGCGAATCAGAGCTTCAAAATGGCGAATT
TCGCGGAATTTAATTTCGCGAATCAGAGCTTCAAAATGGCGAATTTCGCG
GAATTTAATTTCGCGAATCAGAGCTTCAAAATGGCGAATTTCGCGGAATT
TAATTTCGCGAATCAGAGCTTCAAAATGGCGAATTTCGCGGAATTTAATT
TCGCGAATCAGAGCTTCAAAATGGCGAATTTCGCGGAATTTAATTTCGCG
AATCAGAGCTTCAAAATGGCGAATTTCGCGGAATTTAATTTCGCGAATCA
GAGCTTCAAAATGGCGAATTTCGCGGAATTTAATTTCGCGAATCAGAGCT
TCAAAATGGCGAATTTCGCGGAATTTAATTTCGCGAATCAGAGCTTCAAA
ATGGCGAATTTCGCGGAATTTAATTTCGCGAATTATGCCCAAATTCGCGA
AATTAAATTCCGCGAAAATTTCTTCCGCGAAAATTTCTTCTCGCGAAAAT
TTCTTCCCTTAAGGTAGGTAAAATCCATGTGTTTCCATTTCAAGAAATTT
TGCGCAAGTCATCGATGACTCAAGAAATCAACATTATAAACCAATAAAAG
ATCAAAGAGAAAAGCCTTAAGTGGGAAAAAATGAGGTTTGCCAATCTTGG
GGATTTCCCAAGCTCAAGATTAAGTTGCCAGGTTTCATCATAAGTTTTCC
TGTGGTATATATATATGAAGACTCCCCGGATTGGCGAACATGAACGAATA
GGAGAAAAACTAAAAACTCACACCTGGAAAAAATTTACATTGTTCTATTT
TGTTCAATCACAAACGCTCATGAAAGCGCCAAATATTTTACTATCCAATC
ACGGCGATATCAATTGTTTTATTTTGTCCAATCAAAAAATTGTTGTACGA
TTGTTTAAAAAGAAGTATCCAATCAAATGAGGGTAAAAGGGCTTTCATCC
AATCAGAACAGAAAGGATTCTTTGAAAAAATAATCTGTTCTGATTGGATG
AAAGCCCTTTTACCTTAATTTGATTGCATCAAATTCCTGCTTTCGTTTAA
AAACTAAATTCATCCCTTAGAATCAACGATTGAAACAAATAAAGTTAATT
GACTACTCATTATCCAAGGTGCCGAAAAGCCATTAGCGCAAAAAAGTAGG
GTCAGTCATTAACCTTCATCATACATGGCAATCTCATTGGTTGAAATTTA
AAAAAGACTTTCAGATGGAGCGAATTACGGAAACAACTAAGAAGAAGGGA
CCACTTTTGTTTTTATTGCAGATTTCGATATAAAAATTGCATGGGGAATA
CTTCTGTCAATGTGTATTATGTGTCAAATATGTATATAAGCATTGTATTG
TTGGAATAGAAAAGAGAGAAGAGGTAAGTCTAGTCTAGCCAAATTGTCAG
CTGTCAGAGGGCGTAAAAATAATGTGAGAGCTTATTCGTATCAAAAGCAA
AACACACAGATTTTACCAAGACTTAAGACTTAAGACCTTAGGATCTCAGG
ATCTCAAAGCTCAAAAATGTTCCAATAAGCCTGAGTTCCGCCCGCATACC
TTAGAATATGTCCTGTATTTTCGAGAAAACTCAGAAATTCGTAGAACTCT
TGGAAAAAAATATAGAAATGCTACTAAAAATATGTTTCCACAAGCACAAA
CTCACTTCCTCGTTTTTTCTCTTTGCTCTGTAACGGCCCGTCCAATTGCG
TGCGTATTCGATACATCGGATATGCGTTGGACAGAGATGTCGAAGCGAAG
AAAGCAAAAAGATTGACCAGCTTTGATCATGTATTGTTTTAGCCATTCCT
ATGTCATTTCAGGCCCAAAAAAAAAATTTCTAACACCCCCGTGGGGGGGA
GCTTAAAGCATCCCCCAAACCCCCAGCTCAATTTTTCTCGCTCGTTCCGC
TCGCTCGTACCGCATTTTCATTCTCATAAGTTGGCAACTATGTGTAATTT
TAAGGATGGACACAAGTATTTTGCATGTGTTTCATGTGTTTTGTTTAAAA
TTCCTACGTCATTTCAGACTGTTTTTTTAATTGAATATTGAAAGAATTTT
GAAATGTTTACTGAACTTCTAGTTTGATAAATGAACTTGTTTGTTTGAGT
ACCGTGAACTTGGGTAACTTGCATCAGTGGATGCATCAAATGCCTGACCA
ATCAAGGCAGCAAAATTTCAAAACAAATGGAGCAGTGCAAGAACTGCGAG
TTTCTCACCGACATAATTGCAGGTAAATAAAACAGCATGGTTGGACAATA
AAAAATCATGCAAGATCATAAATTTTAAGATGGCAGGAATTCAGATGTTT
CTCGATGGCTGCTGGATGTAATCTCAAATTTAATAATGATATTAAACACA
CTTATGTATGACATCGCTTTTATGATTAGGAGATACACATTTTACAACCT
GCAAATTTTGTAAATCAGGTTTATTTTGATTTAACTTTGTATTTTGATAA
TAACAAACTAGGTCATTTATTTGAGGACTATGCATGTTAGCCTCCACTGA
TGCAAGTTACAGGATCTCACGGTAATACATAGCGTCAGCCTGGGTTTAGT
ACAATTCCCAACTGTATAAACAAAGGAAAAACTTGAATTACAAATTTGTA
TCCACAAACATTCTGATACAAAAACATAGATTTTTGTTTAGTGTTTTTTT
CTTAATATTTTCTATTTCTATGCGGGATTGCTGTCTTTCAGGGGCTCCTT
TTCTTTTATTTTCCTAGGGGCTTTTGCCAAAACTATGATTTTAAATGATT
TCCTGAGGACTAATTTTCAAGAACATGGCCAAAAATTGCAAATATTGTTA
AAATCAATTCACACAAAATTTAAAATCCACTTAAGGTAGTGATTCATTCA
TTCATTCATTTATTTTCAGTTTGTCCACGTCCACCAAACAGAGAATGGCT
ACCTGTTACGCAAAATACGACAAAGAACGGTTTGTTCAAATGACTTGTCC
TTGAAAAAGATTTTTATAAGAAATTTTTCTATTGCTATCTTATTTCTTAC
CCATCAATAGTTGCTTGATTAAAATGAAATTCATTCATGATCCAAAATAA
TAGTGTTATGTCCTCTAGCATTTAGTAAGTAAACACACAGAAAAGATCTT
TTCCCTAGGGTAATTCGACCCAGCATTAATCCATTAGTCCATAAATCATA
TCATACAACTCTGTACAACTCCCTTTTTAGGAAGCTTCACGGTCATGTCA
TATAATGTCTTATGTGAGAAATACACTACAAGGCAATTGTATGGCTACTG
CCCTCAGTGGGCATTGGCATGGGATTACAGAAAGAGTGCGATCTTAAAAG
AAATCTTGCAATTCAATGCTGATGTATTGAGTTTACAGGTATGTAGTTTA
CATAAAGTTTGGCTGAGAAACTACTTTTCTTTTCGTAGTATGATGAAATT
CTCAACTTCAGTTGAGCTAGAATCTGAGAATGTCTGTGTGTATGTCTCAA
AACTTTGGGGCAGCCTGGAGACTTCAAAAATTATCAGATTTGGCTGAAAT
TGGGCACACTTGTTCCTTCAGTGAATATAAAGTTATTCAAATTATTTAAA
ATTTTCAAATTAACCCCCAGTTGTTTTTTTTTCAAAAATTTTGATTTTTG
GGTCGTGGAGACAAGTTTTAAAACTAGTTTGTTTTGCTACAATCGGGTTT
TTGAATAATCTGAAGCTACTGAAGTTAAGCCCACCCAGAGCATTGTGCAC
GTTCGTTATTTTGTATGGATGGGTGAATATTGAGAAACTGATTCCATACA
CGGTTTTTTTTTTAAGCTACTAGTTTTACCAAGCAGCCTCAATGTTTCTT
AAGAAATTGGCTATTTGAGCCTTAAATGTTTCTTACATGTTTCTAAACTT
TTTGACATAATCAGCCTTATGGAAGGCTGGATTGGAAGGTTCTTAAAAAA
AACGAATTAAAAAATGTTATTTTCTCATTCTCAGCCTCGGCATGTTTCTT
AGATGTTTGTTAGTTTTTAGGCATTCTGAGTTTTTAGGCATTCTTGTTTC
TTAAAAGTGTGTTTCTTAAAATAAAAAAAACGTGTATTCAGAGAGAAAAC
CTGTTCAATTAAATTGTATACACATCGATTAATTACTTTCCAAAAGTTTT
CACTTATGTTTTTTCCTTTAGGAAATTGGAACAGAAGTATTTTGGAATTT
CTTCCTGCCAGAATTAAAAAAGAACGGCTATGAAGGGATCTTCAATCCCA
AGTCTCGAGCGAAAACCATGTCTGAAGAAGATCGTCGATATGTTGATGGA
TGTGCTATTTTCTGGAACTCTGCTAAGTAAAAGGACTTTTCAGTCAGGGC
ACATAAATCAAATCAATATTGAAGTCATGTTATGTGAATTGTATTCTTAC
ATTTTAACAAGGATTTCTCATGAATAATTTCTCTTTTTTGAAAGTTTTTT
CTATTTAATTTGAAAAAGAATTTGTGTACCTTGCAGCTCTACTGCAACAC
TCTAGTTTCTTTGAATGTATAGAATTTTTCTGAATTTATTTGTGTTGTAT
TCTTCCTTAGATTCACATTGTTGAAAGAACATCTTGTTGAGTTCAACCAG
CTAGCAGCTGCGAATTGTGAAAATGCAGATGATATGTTAAACCGGGTGAT
GCAAAGAGATAACATTTGTATGATGGCTTTATTGGAGACAACAGAACCAG
TAGCAGAGCTGAATAACAGCAAAGGGAAGCTAGTTGTCACCAATGCCCAC
ATCCATTGGGATCCAGAATTTAAGGATGTAAAAGTTATTCAATCCGTCAT
GTTGATGAGAGAGCTCAAGAACTTCCTGGAAGAATCTAACGGAGGTATAA
CTAAAGTCCTTCCTAGATTAGTTATCCATAAATGTTCATACGATTATAAC
TTATGAATTTCAACAGGGTATTTTTGGATGAATTAAATCTGTTTGCAGTG
AAATTAAAAATTATCCTAAATAGAAGACCGTTTTAACTGATACTGAGAAA
AAGAAATTCTATTCTATTCTATAATGGTGACATTTCAACTTGACCAATAT
TTTAAATGTCTTAATATTTAAGTCTTCAATCTTTAATAAATCCTTCTCTT
TTCTTCAGGAAAAGCGGGCTTGAAAACACCATTTGTCATTTGCGCTGACA
TGAATTCCTTGGTGGACTCTGGCGCCATCGAATATGTTGAAAAAGGGAAA
ATCCCAATCAATCATCCAGATTTCAAGACCATGAAATATGGGGGTTTCCT
CTCAAAGCACACAGATAAGGAGAAGAAAAATGGGGAGATGGTGACGCACC
CTTTCAAGTTGAGTAGAGTTGCAAAAGAGAATGAACTGCCATTCACTAAT
TATACATATGACTTTGAAGGAGTGTTAGATTATATCTTCTATACTAAAGA
TGAGTTGACAATCCTAGGTGAACTTGGTCCTGTTAACTTGGAATATCTGA
AGAAAAATAAAGTCATTGGGTTTCCACATCCTCATTTCCCGTCAGATCAT
ATTTGTTTGGTTGTCGAGTTTGATTTCAAATTGCCTTCCAGGTAGTTTGG
ACTCTCTTCAACCATCAATTATCTAAAACGGTGAATTGTTATGTGAATTT
TTTTAACGTGGAATACTTCTTCCAGATTTTACATCTTGTCGGATTTGAGC
ACATTTCTTCCAACCTACATTTCCCACAACCCTGCATTTTTCTTTATGGA
TGACATGGCTGGCAAAACTGAGATCAAAGTGTACTGGTTGCATCAAATTT
TTCTTTTGCTTGACTCGTGGAAATCGGTTTTAACAATTATTTGTGAATTT
CATCCCCTGCCCCCATTATTATATATGATGTTTAGTTGTTTTTGCTTTGT
TTAAAAACATATACAACAAATTTTTTCATTCCTAAATATATGAAAGATGT
TAGGAAATTAAGATAAGTGCCAAAAATGTAAAATTTATTCAAGTTTCTTA
TAAATGTGGTTATTATATATTATTTTTTAGATTTTTTTGTCACATTTTTA
TTGATTCAAAACTAAATGATATTTTCCTAGCATTATTAGATTCTAGATCT
TCGTTGAACGAATAACCACGTTCACTAATCTCATAAAAAAAGAAACTGTG
ATACTTTTTTTCTCTCAAACTACCTAGTGAACTACCTACCTAGTAAATTA
GTTCTTTTTTGGTACAAAACTTTCTCACTGATATCATTATTGATAAATTT
TTAAAAACACCTTTTTATTGATTTTGAATTTTCCATTCTGTTATCAAGGG
ACCTTCGTTAAAATTAGAAATGAAGCAACATTTAGGAAGAAATTTATTTT
CTGGATAGAATTATGGTAAAAAGCCAATAATATGCATAATTTTGATTTTA
CCATCTTGTTAATAATTATAACTACTGTAATAGTAATAGATCTTTTAAGA
AATCCTGTTTAGATTTTTAGAAAGTGACTATTTTTTCTTGTACAAAGTAT
AATAATATGGTGTGTAGGGATGTTAAGCATATTGTATCTATTAAAAAGAA
CATTTTTTAAGCTTTTTCCAAACAAACCCAAAGTTTTCACAGATTGTTCT
GCTGATGAGATTTTCATTTGTCAATACTTTGACGACGTAAAGAGTTTTAA
GTTCATATGAATTACAAAGTCTGGAAGATTTCGCACGAAAAGGTAAGGTA
GCATTTTTATGGCATGTGAAAAGATAATGAGTGGAAAAATATTTTGTCAT
TAGAAGAAGTTTGAGATTGAGAACTGTACACTTTTTTATATAAATTGTGG
AAAAACTCACTTTTAAGCATTTCAAATCTTGACTATTCACCTTTTGTCAA
AATACGACTGGATAAGAAAAGATAATTCCAAACACCTGTGAATAAGATTG
GCTTTTATTATGTAAAATACTACTGCAAAGATTTTTTTTATCAAACTCTA
ATGTTTTTGGTCATTTATAATATTTTTTGTGCACATGTGTATTAAAGCGA
AACCATAATTGTATTTGTGTAATATTGAACACCTATCACGCAAGAAGCAA
TCTATTTTATTGACATTATAGTCAATGTACTGATAATACCACAGATCGTA
ATTTACTTTAACTAAGGATTTTTTAAAGGTAATCTAAAATAATGTTTGTC
ATTTCTTGAGATTTTTGTTGTGGTTTTTTTTTTTGGCGTGAGATCTAGAA
CTTTGAATTATGCGATTTTTTTAAAACGAGATCTTCTAAAGGATGAAAAC
CCAGGTTTTTCTTAAATTTACTTTACATTTTATTTTAAAACTAATTCTTA
TTTATGTATAGCAAGTTAGAAGCAGTAGTCGTCAATTTTCACCTTAGCCT
AGCACTTTTATTTGTTGACAACCTTTTTAATCAATCTTATCAATGACGTT
CAGAACGAAATGTCATTTTGAAATGAATAAGTAAATAATAGTGATCATTG
AACTACCTTTGTTTGTGGAAATTGATATAAAAATAACTTCGAACCATCAG
AACTAGTAACTCAAAGAGTCGAGAGCACTAGGTGAAATTGACAAACTGCT
ATGATTTTATCCCAGCTTTTTTTAAAAAAAATAAAGAGACAGGTTGATGT
ATTTGTTTACTTCTGGTCATTGCAGAAGATGATATGAAAACAGTTGAAAA
AGAAAACCACATAAAGATTTTAAACTTAAAATTCTTTTATTCTATCATAT
TGTAGTTCTTTATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033862XLOC_033862Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053691-exon-scaffold_233-1575043694:1035746..1036291TCONS_00053691-exon-scaffold_233-1575043694:1035746..1036291Clytia hemisphaericaexon
TCONS_00053691-exon-scaffold_233-1575043694:1030204..1030672TCONS_00053691-exon-scaffold_233-1575043694:1030204..1030672Clytia hemisphaericaexon
TCONS_00053691-exon-scaffold_233-1575043694:1029266..1029420TCONS_00053691-exon-scaffold_233-1575043694:1029266..1029420Clytia hemisphaericaexon
TCONS_00053691-exon-scaffold_233-1575043694:1028748..1029031TCONS_00053691-exon-scaffold_233-1575043694:1028748..1029031Clytia hemisphaericaexon
TCONS_00053691-exon-scaffold_233-1575043694:1025926..1028483TCONS_00053691-exon-scaffold_233-1575043694:1025926..1028483Clytia hemisphaericaexon
TCONS_00053691-exon-scaffold_233-1510915933:1035746..1036291TCONS_00053691-exon-scaffold_233-1510915933:1035746..1036291Clytia hemisphaericaexon
TCONS_00053691-exon-scaffold_233-1510915933:1030204..1030672TCONS_00053691-exon-scaffold_233-1510915933:1030204..1030672Clytia hemisphaericaexon
TCONS_00053691-exon-scaffold_233-1510915933:1029266..1029420TCONS_00053691-exon-scaffold_233-1510915933:1029266..1029420Clytia hemisphaericaexon
TCONS_00053691-exon-scaffold_233-1510915933:1028748..1029031TCONS_00053691-exon-scaffold_233-1510915933:1028748..1029031Clytia hemisphaericaexon
TCONS_00053691-exon-scaffold_233-1510915933:1025926..1028483TCONS_00053691-exon-scaffold_233-1510915933:1025926..1028483Clytia hemisphaericaexon
TCONS_00053691-exon-scaffold_233-1491911889:1035746..1036291TCONS_00053691-exon-scaffold_233-1491911889:1035746..1036291Clytia hemisphaericaexon
TCONS_00053691-exon-scaffold_233-1491911889:1030204..1030672TCONS_00053691-exon-scaffold_233-1491911889:1030204..1030672Clytia hemisphaericaexon
TCONS_00053691-exon-scaffold_233-1491911889:1029266..1029420TCONS_00053691-exon-scaffold_233-1491911889:1029266..1029420Clytia hemisphaericaexon
TCONS_00053691-exon-scaffold_233-1491911889:1028748..1029031TCONS_00053691-exon-scaffold_233-1491911889:1028748..1029031Clytia hemisphaericaexon
TCONS_00053691-exon-scaffold_233-1491911889:1025926..1028483TCONS_00053691-exon-scaffold_233-1491911889:1025926..1028483Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1025926..1036291 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.32467	0	0	0.11029	0.271966	0	0.622978	0.116158	0.173506	0.287353	0.218754	0.405534	0.141687	0.139993	0.295591	0.402086	0.222132	0.288408	0.466298	0.112637	1.16415	1.46827	0	0	0.271128	0.18743	0.175548	0	0.116638	0
Blast
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BLAST of TCONS_00053691 vs. Swiss-Prot (Human)
Match: CNOT6 (CCR4-NOT transcription complex subunit 6 OS=Homo sapiens GN=CNOT6 PE=1 SV=2)

HSP 1 Score: 375.17 bits (962), Expect = 5.219e-115
Identity = 180/357 (50.42%), Postives = 248/357 (69.47%), Query Frame = 2 
Query:  863 FTVMSYNVLCEKYTTRQLYGYCPQWALAWDYRKSAILKEILQFNADVLSLQEIGTEVFWNFFLPELKKNGYEGIFNPKSRAKTMSEEDRRYVDGCAIFWNSAKFTLLKEHLVEFNQLAAANCENADDMLNRVMQRDNICMMALLETTEPVAELNNSKGKL-------VVTNAHIHWDPEFKDVKVIQSVMLMRELKNFLEESNG-------GKAGLKTPFVICADMNSLVDSGAIEYVEKGKIPINHPDFKTMKYGGFL---SKHTDKEKKNGEMVTHPFKLSRVAKENELPFTNYTYDFEGVLDYIFYTKDELTILGELGPVNLEYLKKNKVIGFPHPHFPSDHICLVVEFDFKLP 1882
            F+VM YNVLC+KY TRQLYGYCP WAL WDYRK AI++EIL  NAD++SLQE+ TE +++FFL ELK+ GY G F+PKSRA+TMSE++R++VDGCAIF+ + KFTL+++H VEFNQLA AN E ++ MLNRVM +DNI +  LLE  +   E+ + K  L       +V NAH+HWDPE+ DVK++Q++M + E+KN +++++        G+ G   P V+CAD+NSL DSG +EY+  G +  NH DFK ++Y   L   S H      NG  +TH FKL    +   +P+TNYT+DF+G++DYIFY+K +L  LG LGP++  +L +N + G PHP  PSDH  L  + +  LP
Sbjct:  189 FSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIVSLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKESIEMPSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRNLKSSVLGEFG-TIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCHGKNGTTNGR-ITHGFKLQSAYESGLMPYTNYTFDFKGIIDYIFYSKPQLNTLGILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQLELLLP 543

HSP 2 Score: 134.035 bits (336), Expect = 2.635e-32
Identity = 62/108 (57.41%), Postives = 85/108 (78.70%), Query Frame = 3 
Query:  171 TSWTELEIVGSTRNLSPTLWTFTHLTALYLRDNGISRIPPEVSRLKGLTKLDLSKNKIRSLPTEIGDMIELNDLNLSYNALRVLPNEIGRLFKLKSLGLQGNPLPSEI 494
            + W ELEI G  R+LS +LW+ THLTAL+L DN +SRIP ++++L  L  LDLS NKIRSLP E+G+M+ L +L+L+ N LRVLP E+G+LF+L++LGL+GNPL  +I
Sbjct:   29 SHWAELEISGKVRSLSASLWSLTHLTALHLSDNSLSRIPSDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELHLNNNLLRVLPFELGKLFQLQTLGLKGNPLTQDI 136
The following BLAST results are available for this feature:
BLAST of TCONS_00053691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNOT65.219e-11550.42CCR4-NOT transcription complex subunit 6 OS=Homo s... [more]
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