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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053687 ID=TCONS_00053687|Name=TCONS_00053687|organism=Clytia hemisphaerica|type=transcript|length=1611bp
tcatattcaaatttttacttattaagattgtgatttgaaatctacatcaa
aAAAACGCTTCGAATGGTATGTAAAActtctttttattctattttcctAG
GCCGTTTCCATAGCGAAAACTCTATATTTTTCGCTCCAGTTAGCTAGCGG
ACATCAGCATCAGCGGTTACAGACGTTAATTTTAAGATACAAATATCTGT
GGAAAGATTTCAACAATTCATATTGTGTCGGTCAACTGGTGATTTTTATG
GGTTCGTCTGGATATAAGCTACATCTATCGaaTCGAAACATctatacaaa
aatattttcaagtggAATTTGCTTGGACCAATAAAGTTGCAGTTTGGAGA
TTGATGAAAAATCTAATCGATGGAGTATGACATTATAATAGAGGAGATTC
TCAACGCCAAGATGGACTACAAGAACATTGAATAAACGAAAAGACTGTTT
CTTTGATCTTTTACGTAATTTATATTTAATGCGTAATCAGGGCATAATTT
CTAGATATTTAAAATGAGTATAATATGGtagaataataaaatgaataCGC
AAATAATTAGAAAATCGTACGGAATAAGAAGAGTATGAAGTCCGGACTAC
GAAAAGTATAcgctcgggtgcctaataaacggaaattgttagaaatattt
ttcaattttaatagatggggtaaatattttcaaagtttacTAAACAGGTT
ATATATAGGCTAAATACTAAAATGCAATATAATAGTATTTccctttgaca
gctgaaaacattttaaaattaatgAACCTAAAAAGGTCCCCCCCGTCcgg
gttggaaaaaatcgaaaaattaacaaccCCTCCCCCAACGTTTATTATAT
TATACACCTAAGAGTACCGTATTACGTCCCAggtgtttatttattttatt
tttaagaggGCAGGGGTCGCCGTTTAAAAGAAAGGGGCTCCATTAAATTA
TTCTAGTTTGAATAATCTCATTTTGAGACTtctaggaggggcgtttattc
gaagtaatacgggtGGATAAGCATAACAGTCAGTGCCATTGGTATCATAT
GAAATCGGGTGATTTTTTTAGCCCTGTACCGGTAGGGCTGAAAGTAGGAG
CACCGTGACCCTGCCCGAATAAAAAACAGTTCGCAATcggaaaatattca
aaaatttgaaattaaggaCTGATGGGCATTTATTGGGTTAAACAGATGTA
TTTATAACTACAGTGCTCCAAGAAAACCGAATCATATATTGGATATTGTG
ACGGGCCGAGCAATAGTTTTATCATGAAAATAAAGCAAATCCGATTAATT
CACAATTTCTATGATAAAAGATAAAGTTATTCGGGATCAATCTTTGATTT
GCGCAATGAGTTCAAGCTAAAACACAAAAttaaggaaaaaaaataaagta
tgtATAAACCCTATAAAGGCCGgtgtccactttcgcgcgaagcgCATGAA
ACTTTTCACGTTATTTGTAACGTGATTGgttgattaaaaaaagaagcaat
tccattggtcaaaattgacgttcgaaacttttttatggcgtaatcttttc
ttcaggcaaaaacggTTAAGAAAAAATCAATCGCGCGCTTCGCACGAAAG
TTGACACCGNN Run BLAST on NCBI transcript from alignment at scaffold_233:957150..959192- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053687 ID=TCONS_00053687|Name=TCONS_00053687|organism=Clytia hemisphaerica|type=transcript|length=2043bp|location=Sequence derived from alignment at scaffold_233:957150..959192- (Clytia hemisphaerica)
TCATATTCAAATTTTTACTTATTAAGATTGTGATTTGAAATCTACATCAA
AAAAACGCTTCGAATGGTATGTAAAACTTCTTTTTATTCTATTTTCCTAG
GCCGTTTCCATAGCGAAAACTCTATATTTTTCGCTCCAGTTAGCTAGCGG
ACATCAGCATCAGCGGTTACAGACGTTAATTTTAAGATACAAGTAATTCA
TTTAAATTATTTTTTACACTTTGTAATTCTATTGTAAAAATTGATTCTAC
AAGTTTGAAGCTTTATTCTAGTCAATAAATAAAAGCGTACAGTTTAAAAG
CTTCGAAAAGGCGGACACTTCTAATCAGCGGAGCCTGTTTCCCCAATGGT
GTACACTAATTAGAGTGTCCACTGTATAACGGACTATCTTTTTTAATTGT
GACTTCGCTGACTTCGTTATACTTTCTTTCTGTTGTTCAGATATCTGTGG
AAAGATTTCAACAATTCATATTGTGTCGGTCAACTGGTGATTTTTATGGG
TTCGTCTGGATATAAGCTACATCTATCGGTAAATGATAATCAAATCATAG
TCTAAATATAATACTTGGAGTTCTCAGCAATTTAAGGCGTTTGATTGAGG
AAACAGCATTGATTTATTTGAATCGTATGTCCGTATAATTTAAAAAACTT
GGGTTATCTCAAAAGAATTTCTGTTACTTTATTGTACATCTTTTTCTATT
TTATTTTAACAGAATCGAAACATCTATACAAAAATATTTTCAAGTGGAAT
TTGCTTGGACCAATAAAGTTGCAGTTTGGAGATTGATGAAAAATCTAATC
GATGGAGTATGACATTATAATAGAGGAGATTCTCAACGCCAAGATGGACT
ACAAGAACATTGAATAAACGAAAAGACTGTTTCTTTGATCTTTTACGTAA
TTTATATTTAATGCGTAATCAGGGCATAATTTCTAGATATTTAAAATGAG
TATAATATGGTAGAATAATAAAATGAATACGCAAATAATTAGAAAATCGT
ACGGAATAAGAAGAGTATGAAGTCCGGACTACGAAAAGTATACGCTCGGG
TGCCTAATAAACGGAAATTGTTAGAAATATTTTTCAATTTTAATAGATGG
GGTAAATATTTTCAAAGTTTACTAAACAGGTTATATATAGGCTAAATACT
AAAATGCAATATAATAGTATTTCCCTTTGACAGCTGAAAACATTTTAAAA
TTAATGAACCTAAAAAGGTCCCCCCCGTCCGGGTTGGAAAAAATCGAAAA
ATTAACAACCCCTCCCCCAACGTTTATTATATTATACACCTAAGAGTACC
GTATTACGTCCCAGGTGTTTATTTATTTTATTTTTAAGAGGGCAGGGGTC
GCCGTTTAAAAGAAAGGGGCTCCATTAAATTATTCTAGTTTGAATAATCT
CATTTTGAGACTTCTAGGAGGGGCGTTTATTCGAAGTAATACGGGTGGAT
AAGCATAACAGTCAGTGCCATTGGTATCATATGAAATCGGGTGATTTTTT
TAGCCCTGTACCGGTAGGGCTGAAAGTAGGAGCACCGTGACCCTGCCCGA
ATAAAAAACAGTTCGCAATCGGAAAATATTCAAAAATTTGAAATTAAGGA
CTGATGGGCATTTATTGGGTTAAACAGATGTATTTATAACTACAGTGCTC
CAAGAAAACCGAATCATATATTGGATATTGTGACGGGCCGAGCAATAGTT
TTATCATGAAAATAAAGCAAATCCGATTAATTCACAATTTCTATGATAAA
AGATAAAGTTATTCGGGATCAATCTTTGATTTGCGCAATGAGTTCAAGCT
AAAACACAAAATTAAGGAAAAAAAATAAAGTATGTATAAACCCTATAAAG
GCCGGTGTCCACTTTCGCGCGAAGCGCATGAAACTTTTCACGTTATTTGT
AACGTGATTGGTTGATTAAAAAAAGAAGCAATTCCATTGGTCAAAATTGA
CGTTCGAAACTTTTTTATGGCGTAATCTTTTCTTCAGGCAAAAACGGTTA
AGAAAAAATCAATCGCGCGCTTCGCACGAAAGTTGACACCGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053687-exon-scaffold_233-1575043694:959001..959192 | TCONS_00053687-exon-scaffold_233-1575043694:959001..959192 | Clytia hemisphaerica | exon |
| TCONS_00053687-exon-scaffold_233-1575043694:958665..958752 | TCONS_00053687-exon-scaffold_233-1575043694:958665..958752 | Clytia hemisphaerica | exon |
| TCONS_00053687-exon-scaffold_233-1575043694:957150..958480 | TCONS_00053687-exon-scaffold_233-1575043694:957150..958480 | Clytia hemisphaerica | exon |
| TCONS_00053687-exon-scaffold_233-1510915933:959001..959192 | TCONS_00053687-exon-scaffold_233-1510915933:959001..959192 | Clytia hemisphaerica | exon |
| TCONS_00053687-exon-scaffold_233-1510915933:958665..958752 | TCONS_00053687-exon-scaffold_233-1510915933:958665..958752 | Clytia hemisphaerica | exon |
| TCONS_00053687-exon-scaffold_233-1510915933:957150..958480 | TCONS_00053687-exon-scaffold_233-1510915933:957150..958480 | Clytia hemisphaerica | exon |
| TCONS_00053687-exon-scaffold_233-1491911889:959001..959192 | TCONS_00053687-exon-scaffold_233-1491911889:959001..959192 | Clytia hemisphaerica | exon |
| TCONS_00053687-exon-scaffold_233-1491911889:958665..958752 | TCONS_00053687-exon-scaffold_233-1491911889:958665..958752 | Clytia hemisphaerica | exon |
| TCONS_00053687-exon-scaffold_233-1491911889:957150..958480 | TCONS_00053687-exon-scaffold_233-1491911889:957150..958480 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:957150..959192 - |
Blast
The following BLAST results are available for this feature:
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