TCONS_00053676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053676
Unique NameTCONS_00053676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2476

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053676 ID=TCONS_00053676|Name=TCONS_00053676|organism=Clytia hemisphaerica|type=transcript|length=2476bp
ggagaacgttcttatattttagcgataacacacacaaacttttctactca
atcgcatgttcaaactcgatactttaattagggacaccctgtataagcCT
ATCTTATTATACCACTTTCGTGCTACATACCGTCAGCAAGTATTTACTGA
ATGTGCTCGgtcatcaaataaaaaaaggttAATTGCATGTCTTTTGTTCC
TCTAATTGCTTATGTAAATGGAGTGGATTTCCTGATGTATTTAAAAACGA
GAAAGAAGAGATGGTAATTTTTGTGCGGTGAATGGCAGAAAACATGTGTA
AAGGAGAAATTTAATTGATCATCATGGCTGATTTGAATGTGGCAGGTTTG
ATCAGTATCATCATCTTTTATTTGGCTATCCTTGGCATCGGTTTATTTGC
TGCCTGGAGAAAGAACAAACACACGAAAGAGAATGCGCAAACCACACAAG
ACGAAACGAATGAAGTTATTTTAGCTGGAAGAACTATTGGGATGTTTATT
GGTTGCTTCACTATGACTGCAACATGGGTTGGTGGTGGTTACATCAATGG
AACAGCAGAGTCAGTGTACAATGATGGTCTGGTCTGGGCTCAAGCACCAT
GGGGTTATGCTACCAGTTTAGCGATGGGTGGTTTCTTTTTTGCTCGCAAA
ATGAGAGAAGCGGAATATATCACCATGTTGGACCCTCTGCAAGACAAGTA
CGGTCGTGTGATGGGTGCTTTCCTTTACATTCCTGCTTTCCTTGGTGAAA
CATTTTGGTCTGCATCTATCCTGGCAGCTCTTGGTGCAACATTGACAGTT
ATCTTGGGGTTGAACATGAATATTTCCGTCATCGTGTCGGCGTGTATTGC
TGTCGGCTACACCTTTTTTGGTGGACTTTATTCAGTTGCATACACGGACG
TCGTTCAATTGATTTGCATTGCGGTCGGATTGTGGTTGACGGTTCCTTTC
TCTTTGACCAATGAAAACGTTGAATCGATTGGTGCACGTAAAGAGGAATG
GCTCGGCCAATTGTATGGTGCTAAAGTCGGAAAATGGATTGATTACGCTT
TCTTATTGatTTGTGGAGGTATTCCATGGCAAGTGTATTTCCAACGTGTA
TTGTCTTCCAAGTCAGCTCACCGTGCTCAAATTCTCTCCTTCGTTGCTGC
TTTCGGCTGTATTGTGCTGGCTATCCCTGCAGTTCTGATCGGTGCCGCCG
CCAAAAGCGCTGACTGGGGAGCAGTAAGTGGGGCAGTGGACGCCAACCTT
GTGACCAACAAAACCGGAGAGTGGGTGATCACGGATACCAGACTGGTCCT
CCCCATGGTTCTTCAATACTTAGCTCCTGGATGGGTGTCTTTCATTGGTC
TTGGTGCCATCTCAGCTGCTGTCATGTCTAGTGCTGACTCGTCAGTTTTG
TCTGCTAGTTCCATGTTCGGACATAATATCTACAAGTTGATCATCAGAAA
AAATGCCAGTGCCAATGAAATTATTTGGGTGATTCGTATTGGTATCATCT
TTGTTGGTATCATGGCAACGCTGGTTGGGTTGACGGTCGACAGCATCTAC
GCTTTGTTCCATTTGTGCTCGGACCTGGTCTTTGTCATCCTCTTCCCACA
GCTGGTGGGTGCTGTCCACATCCAAGATGTCAACACGTATGGATCCATAT
GTGCTTACATAGTGGGATTGTTCTTACGCATCACCGGTGGAGAAGAATTG
ATCGGGTTCCCGGCTACTTTTAAATATCCTTACTATGACGAGACGTACAG
TAATGGGAAAGGATCACAAAATTTCCCCTTCCGTACCCTAGCTATGATTA
TTTCTTTCATCACGCTCGTCTCTGTTTCCAAATTGGCTTATTATTTGTTC
GATAATGAAATCTTGGGTGAAAATTACGATTTTTTAGGCGTTTTGGAGCG
CCGACGAAATCTTGCCGGCAAGAAAGGAAGACGAGGTGAGGATGATGCTT
TACCGCTACAAGAAAAATACAACGGATTCGACGACCCAACTCCTCAACAA
ATCTAAACGTACGTGTCAAAATGATTTGTCAGACATCGCGTGCTACCAAT
ATGTATCAATGTAGTTTTCGAATATCTAATGAAAGCTTTTACAAGTTTTC
AGGTCTCCTTAATAACCATGTGAAAAATGGCCAAGTGACTAGGACTGTAT
CCGTGATGACCTAGTAAAAGTCTGACTGGCTTTTAAAAGACAGCTGGATA
GACTGAATAATGCAAAATTGAAATAAGCGTGATGGAGCTCTTTTGAAACA
AGACGCTGAAAAGTTATTAGGGCTGTGTTTagcattttaattattttttg
tataatctcaaaagatattttactttgtatttttaatttGTACTGTGTAT
TATCTCATTTACATGTAGGCATTCATGGAAATATGTACGGTACTTCCTAt
caaattttcttcatttttctttggtttggtTAACCTCATTTACAGAAAGA
AAGTTTTATACTCTTTAGCGCAACAC
Run BLAST on NCBI

transcript from alignment at scaffold_233:675583..687099-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053676 ID=TCONS_00053676|Name=TCONS_00053676|organism=Clytia hemisphaerica|type=transcript|length=11517bp|location=Sequence derived from alignment at scaffold_233:675583..687099- (Clytia hemisphaerica)
GGAGAACGTTCTTATATTTTAGCGATAACACACACAAACTTTTCTACTCA
ATCGCATGTTCAAACTCGATACTTTAATTAGGGACACCCTGTATAAGCCT
ATCTTATTATACCACTTTCGTGCTACATACCGTCAGCAAGTATTTACTGA
ATGTGCTCGGTCATCAAATAAAAAAAGGTTAATTGCATGTCTTTTGTTCC
TCTAATTGCTTATGTAAATGGAGTGGATTTCCTGATGTATTTAAAAACGA
GAAAGAAGAGATGGTAATTTTTGTGCGGTGAATGGCAGAAAACATGTGTA
AAGGTTTGTTGTTGATGTTTTGTGCTGGACCTCTTTGCTTTGAGTTACAG
GGCGTAGGAGTTGTTTAAGAAATACTATGTAGTTATAAGATTTTTTCAAT
GAATCTGTTTTATTTTGCTTTTATTTTTTAGATGGTTATTCATTCGATTT
TATTTTTTTCAGATGGGTTTTCGTTTGCTGTTATTTCTTCTGATAGTTTT
TCTGGGAGTTTCTAAACATCGACCAGAAATGACGACCACGACCAGCGACC
ACGACTGCCAACCAGATATATTTGGGTTATCCAGCTTTTCTCTTTCTTCA
ACGTAGAGTGTCTCTCCTGAATATATTGTTTTGAAGAGTAAGCTCGCCCC
CTGTCTCATATAATTAGAATCACGTGCAAAATGCGTAAAACAGCCCATTC
GACGCTCTTGAAACTTGTATGAAAAGGGTGTCAATTCTATCCTTTTGTCA
GTATCATAATGATTAGTATCATAATGATTAGCGCTGAAAACTTTGAAATT
GGTCTGAGAAGCTTTGTAGTTAATCATCAGATCATCATTTCTGTTCCAAA
TTAGTCATTTTGTCTTAAAAAAGACAATAGAATTGACTACCCTTCCCAAT
GTTTTGCGACTGATAAATTTATCTATTCATATTAAAAGCATCTCATTCAG
CATGATTAAAATATCCGGTGCGTACAGGCATTATAAACTTAATGATCTTT
TCAATATTTTTGTCAAAAAGTGTCACTTTGTCAAGAAAATGACTGGTTTC
AGAGGTCACTTTTTTGTATTCTGAGCTGGGATAATTTTCAGCCATGTGCT
TAATTGTTGATTTGAAAGCCATGCTAGGACTTGATTTGGAATTTCTCTAC
GTTGGAGAAAGCAAATAAACTCGATAATTCAATTTTATCTGGTTGCTGGT
TGTGGTCGATGGTCATGGTCGCCATTTCTGGTCGATGTTTAGAAACTCCC
AGTTTCTTTATTTTTGCTGTTTTTTAAGTTATCTTTGAAGGACTTGGTAG
ATTTCTCAAATGATAGTAACTAGCGGCTTTATGTCTGAAAATTTAATTTC
AACTTGGAGTTTGATAATTTTGTTGTGATTAAAAACATGATATTTCCTTT
CTTAAGGAGTTGAGTGAGTGAGTTGGTGAGTGAAGAAATATTTAAGACGA
TTATCAGGCCCTCATTTTCTCGTTCTTCATTTGTGATTTCTTTCCTATCT
CATCACCTAGACAATATTTCATCGGAAAACCACCAGTAATTAATATTGGC
TATTTCAGTTTTACGAACTGAATTTTTATTAAATTTTTTTGAATGTCTAA
TATGTTAATAAAGGGCGAAAAAGCTAAAAAAAAGTTATGCACCCAATTTT
CCTGTTGTTTATTTTTCATCTGTATAAAGCTATTCAAAGGATCAGTGCAA
TTTCTTCATTCTGAAAGGTTGCCAATAATATTATTGGACATTAATGTCTA
TCCGTTGTCCGTTTAGTTTCATTAAAAAGGATGAAATATGAATGATGACG
AAATATTTTGCAAAGTTACACGATTTTTAAACATCAGCGTTCATACTGGT
TCATATCAAGTGTTGACCTACGTATTGATTCCTTATGGCGACTGTTCAGA
AGTATCTAAAATAGGGCTAATATATGAATGTGTCCACACGGGTTAAACTT
TAAATGGTTTTCGAAAGGATTTGAGAGGATGATCATGATCCTTAACCCAA
ACAACCTCATCCATGTCGTTATCACTTTATATATCTATTACTTTNTCTTA
TAAAAAAAAAAGTGTATTACGTGAGAGTACTATAATCTAACTTTGATGGA
GTTTCGATATAGATTTTCTTTCATAAAAGCTATCTTTTCATTATGTTGTG
GTATTAAGGCAGGAATACACGTTTTTTTTAAGAACAAACTATATAAGAAC
ATAAGGCTTCAATGGCCAAAATGTTAAGAACAAGTTTTAAGAACATTTTA
AGACTTTGTAGACTCTAAAATGGTCAATTTCTTAAGAAAATGGACAGAAA
TACTCACAAAATGGAGAAAATCAGAACGTTAAGAACATTTTTAGGCTTAA
AATCAAAAAAATAAAGAACAACCCAAGGCTTCAAAATTTTGGATGTTCTT
ATAAAAAGAACATGTAAGGTTTTAAATTAGATCAAAAGATTGATTTCTAT
CAATTTTAATATCATCATGTGATGGGGCGACCCCTTTTTTTGGATATCAG
TCATTTTCAGCTGCATTAGTGTATGTTAGTTGTTTGGCGAAAGTGCTGTT
TTCATTGAGGAAGTGTAGCGAAATCTAATTTTTTCGTAAGTGGACATGTC
TCGCCGTCACGATTCTCTATCTATTTGGTTTAGTTACAGCAGGCCATCCG
GCCCATTCTCGCAACTGTGTTAATGCAATTATGGGTCCTGTCAGCAACCT
TGGACTGACTATCCAATCCCCCTCCCATGACAGTAGCGTAGCCAAGAGGG
GCGCAAAATTTGTGTAGGAGAGCAGATTTTTATGCCGTTATGATTATCTT
TTAATAACATGAATAGATAATTACAGTGTCATAAAAACCTGCTCTCCCTG
CTCTCCTACACAAATTTTGCGCCCCTCTTGGCTACGCTACTGCATNCGAC
CTGATCATCTATCTCCCTTTTTATGAGAATATTTGACTACATTCTTTTTG
TTAAATGGTTTGATATGTCCTGTTTAAAAGGTCTTGTTGAAAAACAGTTT
AAATATCGACTGCGATTTAAAAAGATTCGTTAAAAGGCTTGATCATTCAA
TCAACTTGTTCTGTTGACAAATAGCTGCTAGATGAGAACCCTCCAACACA
AATTTTCTCAACACATATATTTCGTTTTTGCACTATAGCTTTGACTGGTT
TTGTTTTGTGTATTTTTTTCTGCGAGATGTTTCAGAATAAATTAGGATGT
ACAAAATAGTTTTGCTGATGATGTTGGTACATTAGAAGCATCAATACTTT
CTGTCTTTGGTTGTATCATGAACATGGTTGTACGTAATCCAATTTAGTGA
ATTGGATTGATTGAGTTTGCGAAAGGCGAAAATACACGTTTTTTTTAAGT
AACTTGAGGCTGAAAATGGTCTGAGAAATAAGGAATTGTTAAGGAACTGC
TCAGGCTGAGAATAAAAAATCAAGTTAAGGAACAGCAAGAGTTCAATTTG
AATTTGTACACATTTACAATGACCTAAATAAAAAGACGGAAAATATTGCT
GAAACGCCTTTCAATATGTCAAAAAGACAAAAAATGCTGATAAAGAAGCT
ACACAATTAGCAAATCCAAACTTAACAGCTAATTAACTAAGGAACTCGAT
AAGGAACTTTGAAGCTGAAACTCTCTGGCAAGATAAGGAACTCCAGGCTC
GGAGCCAAGTTAAGGTTCCTTATAAAAAAAAAGTGTATTACGTGAGAGTA
CTATAATCTAACTTTGATGAAGTTTCGATATAGATTTTCTTTCATACAAG
CTATCTTTTCATTATGTTGTGGTATTAAGGCAGGAATACACGTTTTTTTT
AAGAACAAACTATATAAGAACATAAGGCTTCAATGGCCAAAATGTTAAGA
ACAAGTTTTAAGAACATTTTAAGACTTTGTAGACTCTAAAATGGTCAATT
TCTTAAGAAAATGGACAGAAATACTCACAAAATGGAGAAAATCAGAACGT
TAAGAACATTTTTAGGCTTAAAATCAAAAAAATAAAGAACAACCCAAGGC
TTCAAAATTTTGGATGTTCTTATAAAAAGAACATGTAAGGTTTTAAATTA
GATCAAAAGATTGATTTCTATCAATTTTAATATCATCATGTGATGGGGCG
ACCCCTTTTTTTGGATATCAGTCATTTTCAGCTGCATTAGTGTATGTTAG
TTGTTTGGCGAAAGTGCTGTTTTCATTGAGGAAGTGTAGCGAAATCTAAT
TTTTTCGTAAGTGGACATGTCTCGCCGTCACGATTCTCTATCTATTTGGT
TTAGTTACAGCAGGCCATCCGGCCCATTCTCGCAACTGTGTTAATGCAAT
TATGGGTCCTGTCAGCAACCTTGGACTGACTATCCAATCCCCCTCCCATG
ACAGTAGCGTAGCCAAGAGGGGCGCAAAATTTGTGTAGGAGAGCAGATTT
TTATGCCGTTATAATTATCTTTTAATAACATGAATAGATAATTACAGTGT
CATAAAAACCTGCTCTCCTACACAAATTTTGCGCCCCTCTTGGCTACGCT
ACTGCATGGCATCGGTTGACTCGGGTGAAGTTCGTTCACTTGCCAAGTAG
GAATGCTCAGGAATCAAAGTTGATGACGACTATAACAACCTACTCCCATC
CACAGACTTTGAATCGGGTTTTTGAATATGAAACTTTAAAAGTTTGAAGA
GGAATAATTAGAATTTTTAATATTTCACATTAAAATGTTTGAACTCTCGG
AAGATTCTCGCTTCCAACATTTTTGTTTATCTTTGATAGTTTTTTGTTAA
AGGTTTTTGTGGTTTTGAGTTATGCCATTTATATGGGGCCTATATGTGTC
AAACTGTAAAGATTTTTTTGATAATTTGTTTAATCTTACGATTTCGGAAA
TTTATAGGCTTATCATAGCTGTTCGTTAAAAAATGTCTGCACGCCGAGTT
GATAGATTTCAGCTGGAAAATCAAATAATAAATATAATTTCTGGTGAGGT
TTCGTGCACCAGAGAGGTTAGCGTGGCAGCGTGATATCCGTATTAGGGAT
TGGTTATTTAAATTGTCCTGAAATTGACATACTCATTACATGCTGCGTTG
CACTTAACACGCTGGTAAAAAAGTAATATCAATTCGTTTAGGGATATGTT
TAATAACCTTCTTTATAGTTTGACGTCATTTTGATCACAATTCATTGCTC
TCTTGCCTGTTATCCCATCTTATAATACAATAGTGAAGTCACTGATTGTA
TTATGATAGAACAGGGTATGCGTGGACGCACGCATTAAGCAATTGAATAA
GGATTTGTTGTAGTAATATGTCATAGGAAATGAGGGGTTGTGTTAAAATT
TGACGAGAGAATTTTTTTATAAATACTGTAGGAAATACTTCCAACTGTGA
TTAAAATGTTTCGAATTATCAATATTTCTACACAATTTTTTTCTCGATTG
AGTAGTAAAATGGGGGAGTTGTTTGATGTGGATATGATATGTTGTACATT
TGCACATCAATGAGTTAATCTAGCGGGAAACACTTCAGAAAAGTTGATAG
AGTTAGTAGAGGAACTTTCTTCGATACGTGGTCGCGTAAAAGAATCCGAT
ATTGAAATAAATTACAATTCAGTTTGAATACAGTTACCAATATAGTTAAC
TGTTTGTTTCATCACGAATGGAAAAGACCGTGAATTCATATTTTAATGTA
CTGAACTGGTTTTATCAGCACTAGTGATTTCACGACTTTTTCTGTATTAT
TCCATTTAAAAAATATTAACTTTAAAATAGCTTCTCTTGTTCCAATCTTA
GTTTTAATTAACTTTTATAAAATTCTTTCAATACAAAGACCACGCCCATT
TATTTTGACCCAAGTTTTCTTAGATTTGAATGTTTTTCACTGGGTGAAAG
TAAAGAATTTTCTTATAAAATGTTATCTAAGTGTATCAATAATTTAAAGA
ATTGGTCTGCCTGTTTTAAACACAATCATAGAGGGACGATACTTTAACCT
TGTAGTACTTTAACTAGTACTTATTTTTTGCCCGATTGTTGATCCTCCAT
CTTTTACTTTTCTCATATTTTGATTGTAAACGAGACTAAAATATAATTTC
TTCTCNATTATAAAAGAACAGGGTATGCGTGGACGCACGCATTAAGCAAT
TGAATAAGGATTTGTTGTAGTAATATGTCATAGGAAATGAGGGGTTGTGT
TAAAATTTGACGAGAGAATTTTTTTATAAATACTGTAGGAAATACTTCCA
ACTGTGATTAAAATGTTTCGAATTATCAATATTTCTACACAATTTTTTTC
TCGATTGAGTAGTAAAATGGGGGAGTTGTTTGATGTGGATATGATATGTT
GTACATTTGCACATCAATGAGTTAATCTAGCGGGAAACACTTCAGAAAAG
TTGATAGAGTTAGTAGAGGAACTTTCTTCGATACGTGGTCGCGTAAAAGA
ATCCGATATTGAAATAAATTACAATTCAGTTTGAATACAGTTACCAATAT
AGTTAACTGTTTGTTTCATCACGAATGGAAAAGACCGTGAATTCATATTT
TAATGTACTGAACTGGTTTTATCAGCACTAGTGATTTCACGACTTTTTCT
GTATTATTCCATTTAAAAAATATTAACTTTAAAATAGCTTCTCTTGTTCC
AATCTTAGTTTTAATTAACTTTTATAAAATTCTTTCAATACAAAGACCAC
GCCCATTTATTTTGACCCAAGTTTTCTTAGATTTGAATGTTTTTCACTGG
GTGAAAGTAAAGAATTTTCTTATAAAATGTTATCTAAGTGTATCAATAAT
TTAAAGAATTGGTCTGCCTGTTTTAAACACAATCATAGAGGGACGATACT
TTAACCTTGTAGTACTTTAACTAGTACTTATTTTTTGCCCGATTGTTGAT
CCTCCATCTTTTACTTTTCTCATATTTTGATTGTAAACGAGACTAAAATA
TAATTTCTTCTCCTCTTCTCCTCATTCTTCATTCAGTCGTTTTCGAGTAA
GGCTATTCTTTTCTGTTTGAATGAAAATTGTGGGAAGGTCCTTTTTGCTT
CAGATTCTCAAAGAACTACATTTTAGGTATGTTTTTCACTTTCTTTATCA
AAATTACTAGAGCCAAAAGTTGTTTATTAGCAGTGCCTCTAAATTACTTT
ATATATTTTTTGAACCACACCCAATTTCTCTTTCCGGAGAAAATTTTTTG
ACATTTTTTATTTCGTTGTTATCACTTTAATAATGGTTGACAATTAGTAC
TTGGACATGATTCTTCTTGCTGCCCTGTTAATGATTCATTATGAACAACC
TTAGCGTTTGCAAACATGTTGGATGGGCGTTCCAATTCACCGGCAGACGA
GCTCACAATCTACTCTTTGGTCGTCATGGAAACTGCTCGAAAGCCGCGCC
TCGAAACGCCATAGGAGGTATTTAATCAAGGGAAGACAGGGTGTATAAAA
CTCGTACCATATTAATCTGGGAATAACTCAGATAACCTGAAAATAGCATT
TTTCAGCTTTTTCAGTTCATGTCATCGACTACATCAGTTAAATCACTAGA
TTTAGAAAATCTTTGTAAATTTAGTAAATCTTTGTAGTCAGACGTAGTTT
GTCTAGTGTTTTTATCAATTTATCAATGGAGAAAACAATAGTTAATTCTA
AACAGAGTTTTGGGCAATAAATGTCAATAGGATAAAGCTTTGTGGAGTGC
TCAGATTCCAGACGGTCTAGGAAGATTCATCTGAAGTTATGCAGTAAAAT
CTTTATTCAGAGTTGAGAAGAACAGATCCAAAGCATACTATTTAATTCTA
CCTGGTTACAATATTCACTACAATTAAAAAACAAAACCATTATTCGCTAT
CTGCCATCTAAAGAAAGCTCTTGTACTTTCAGGAGAAATTTAATTGATCA
TCATGGCTGATTTGAATGTGGCAGGTTTGATCAGTATCATCATCTTTTAT
TTGGCTATCCTTGGCATCGGTTTATTTGCTGCCTGGAGAAAGAACAAACA
CACGAAAGAGAATGCGCAAACCACACAAGACGAAACGAATGAAGTTATTT
TAGCTGGAAGAACTATTGGGATGTTTATTGGTTGCTTCACTATGACTGGT
ATGTCGCCTTTCCTTTCGTCTACCGTCACACTGAACAATCTCTATGGTGA
CTAAAAATATTTGTGACAGTGTTGTTTCCAAATCAAAATGAGCGGATGAA
TTTTGAAACCTTTTCAATATATCACAAAAAAAGGAGTTCTCAACCTCTGT
AGCTTTTTAGACGTCTTTCTTAAGATCTCTTCGATTGCATTATGGAGCAA
AAAAGCAGGTCCGAAAAGATTCATTCGAGCAGCAATATTCAGAGCGACAA
TGGTTATTGCATTATGGATTAAGTGAATTTTCGGAGTGAATCTTTATGCT
CCATTTTTCTGGTTCATTAGCATTCAAATCTTTGATATATTTTAGCAACA
TGGGTTGGTGGTGGTTACATCAATGGAACAGCAGAGTCAGTGTACAATGA
TGGTCTGGTCTGGGCTCAAGCACCATGGGGTTATGCTACCAGTTTAGCGA
TGGGTACGTATCTTCTAGCCTAGATATCTAAGCCAGATTGATTCCGTCAC
TTGGTAGAATCTGATGGTAAGTTGTGACTGGATATCTGGTAAACTTAAAA
TTCCGTACATCATAAAAATCATTAAAGCACCGATAACGCTATATTGCGGT
CAGCCATATCTTGGCCTTGTAAAAACTGGCTTGATTAACCAGGCTACCTA
TCTTCTTCATTGTCTCGTGTAAAGATTTCTTCTCGATACTGTTTGTGACA
AAGGGACATTTCTACAACTTTAACTTGTTTCATAATTTCTTTCAGGTGGT
TTCTTTTTTGCTCGCAAAATGAGAGAAGCGGAATATATCACCATGTTGGA
CCCTCTGCAAGACAAGTACGGTCGTGTGATGGGTGCTTTCCTTTACATTC
CTGCTTTCCTTGGTGAAACATTTTGGTCTGCATCTATCCTGGCAGCTCTT
GGTGCAACATTGACAGTTATCTTGGGGTTGAACATGAATATTTCCGTCAT
CGTGTCGGCGTGTATTGCTGTCGGCTACACCTTTTTTGGTGGACTTTATT
CAGGTATAGGATGAAGCAAATCTTTTACTTATGTATGATGTGAATGTTGT
CACATATTTCATACCAGGACAGTGTCTCGCTATTGTTATATTATGCTGAT
ATAAGCAAAAAGTGTTTTGCTTTTCCTCTTTCTGACCAATCTTTCTACAC
ATTCGTGTCAATCTAATGTGAAAAAGCTTGTGAATTAAAATTGATGAGTA
AGCAAACGACATCACTCTTATTTAAAAACAAAACCTTTAAAAGTAAAGTT
AAAGTATTCCAGAAATCGAATGGACTTAATATTTTTATTGATTTTTCTCC
CGCTATCAGTTGCATACACGGACGTCGTTCAATTGATTTGCATTGCGGTC
GGATTGTGGTTGACGGTTCCTTTCTCTTTGACCAATGAAAACGTTGAATC
GATTGGTGCACGTAAAGAGGAATGGCTCGGCCAATTGTATGGTGCTAAAG
TCGGAAAATGGATTGATTACGCTTTCTTATTGGTACGGATAAAGTCTTAT
TAAAATTCAACTGATATAACTTAACTGACTTCTCTTGCGTTCGTTTACTT
TCAATCCATCCTTAGTCTAGCATGCTAGACGATTAATTCAGAAAGCAAAA
AATTATGAAAAGTGAAAGTTTTAGTTAGAAACTGATATTGTACCGTAACA
ATTATCGCATTATCATATAACACCTCTGTCACTGTATTAGATGGATCATA
AACGACTGTAGTCTAATCCATCCTTTAAGTTTTTGGAATTGTTTGTCATA
CTTTGAAAAGTTGTCTTTTTCTTTCTTAGATTTGTGGAGGTATTCCATGG
CAAGTGTATTTCCAACGTGTATTGTCTTCCAAGTCAGCTCACCGTGCTCA
AATTCTCTCCTTCGTTGCTGCTTTCGGCTGTATTGTGCTGGCTATCCCTG
CAGTTCTGATCGGTGCCGCCGCCAAAAGCGCTGGTAAGAATCGTTTCTTA
TATTAGTATATTGGAAGGACTCTTTAGTCGTAACCAAAATATCTGTATCG
AGAAGACATTAAAGATGATACATCTCTTTACCTTCAGACTGGGGAGCAGT
AAGTGGGGCAGTGGACGCCAACCTTGTGACCAACAAAACCGGAGAGTGGG
TGATCACGGATACCAGACTGGTCCTCCCCATGGTTCTTCAATACTTAGCT
CCTGGATGGGTGTCTTTCATTGGTCTTGGTGCCATCTCAGCTGCTGTCAT
GTCTAGTGCTGACTCGTCAGTTTTGTCTGCTAGTTCCATGTTCGGACATA
ATATCTACAAGTTGATCATCAGAAAAAATGTAAGCGAAAAAGAGCATACC
TTTGTCTCATTAACCGGTTCAGCTAAATTCCAACAAAGCTGGAATGTGGT
ATATTAAATTAATAAAATTTTGTGCAAACTTTTCTGTTTTTTTTTTGTCA
TTTGTACTTCTTACCTTAGATAAACTTTCGAATATTATCTTTCAGGCCAG
TGCCAATGAAATTATTTGGGTGATTCGTATTGGTATCATCTTTGTTGGTA
TCATGGCAACGCTGGTTGGGTTGACGGTCGACAGCATCTACGCTTTGTTC
CATTTGTGCTCGGACCTGGTCTTTGTCATCCTCTTCCCACAGCTGGTGGG
TGCTGTCCACATCCAAGATGTCAACACGTATGGATCCATATGTGCTTACA
TAGTGGGATTGTTCTTACGCATCACCGGTGGAGAAGAATTGATCGGGTTC
CCGGCTACTTTTAAATATCCTTACTATGACGAGACGTACAGTAATGGGAA
AGGATCACAAAATTTCCCCTTCCGTACCCTAGCTATGATTATTTCTTTCA
TCACGCTCGTCTCTGTTTCCAAATTGGCTTATTATTTGTTCGATAATGAA
ATCTTGGGTGAAAATTACGATTTTTTAGGCGTTTTGGAGCGCCGACGAAA
TCTTGCCGGCAAGAAAGGAAGACGAGGTGAGGATGATGCTTTACCGCTAC
AAGAAAAATACAACGGATTCGACGACCCAACTCCTCAACAAATCTAAACG
TACGTGTCAAAATGATTTGTCAGACATCGCGTGCTACCAATATGTATCAA
TGTAGTTTTCGAATATCTAATGAAAGCTTTTACAAGTTTTCAGGTCTCCT
TAATAACCATGTGAAAAATGGCCAAGTGACTAGGACTGTATCCGTGATGA
CCTAGTAAAAGTCTGACTGGCTTTTAAAAGACAGCTGGATAGACTGAATA
ATGCAAAATTGAAATAAGCGTGATGGAGCTCTTTTGAAACAAGACGCTGA
AAAGTTATTAGGGCTGTGTTTAGCATTTTAATTATTTTTTGTATAATCTC
AAAAGATATTTTACTTTGTATTTTTAATTTGTACTGTGTATTATCTCATT
TACATGTAGGCATTCATGGAAATATGTACGGTACTTCCTATCAAATTTTC
TTCATTTTTCTTTGGTTTGGTTAACCTCATTTACAGAAAGAAAGTTTTAT
ACTCTTTAGCGCAACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033853XLOC_033853Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053676-exon-scaffold_233-1575043694:686797..687099TCONS_00053676-exon-scaffold_233-1575043694:686797..687099Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1575043694:679052..679267TCONS_00053676-exon-scaffold_233-1575043694:679052..679267Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1575043694:678597..678704TCONS_00053676-exon-scaffold_233-1575043694:678597..678704Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1575043694:678047..678304TCONS_00053676-exon-scaffold_233-1575043694:678047..678304Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1575043694:677568..677740TCONS_00053676-exon-scaffold_233-1575043694:677568..677740Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1575043694:677117..677270TCONS_00053676-exon-scaffold_233-1575043694:677117..677270Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1575043694:676771..677012TCONS_00053676-exon-scaffold_233-1575043694:676771..677012Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1575043694:675583..676604TCONS_00053676-exon-scaffold_233-1575043694:675583..676604Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1510915933:686797..687099TCONS_00053676-exon-scaffold_233-1510915933:686797..687099Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1510915933:679052..679267TCONS_00053676-exon-scaffold_233-1510915933:679052..679267Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1510915933:678597..678704TCONS_00053676-exon-scaffold_233-1510915933:678597..678704Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1510915933:678047..678304TCONS_00053676-exon-scaffold_233-1510915933:678047..678304Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1510915933:677568..677740TCONS_00053676-exon-scaffold_233-1510915933:677568..677740Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1510915933:677117..677270TCONS_00053676-exon-scaffold_233-1510915933:677117..677270Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1510915933:676771..677012TCONS_00053676-exon-scaffold_233-1510915933:676771..677012Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1510915933:675583..676604TCONS_00053676-exon-scaffold_233-1510915933:675583..676604Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1491911889:686797..687099TCONS_00053676-exon-scaffold_233-1491911889:686797..687099Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1491911889:679052..679267TCONS_00053676-exon-scaffold_233-1491911889:679052..679267Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1491911889:678597..678704TCONS_00053676-exon-scaffold_233-1491911889:678597..678704Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1491911889:678047..678304TCONS_00053676-exon-scaffold_233-1491911889:678047..678304Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1491911889:677568..677740TCONS_00053676-exon-scaffold_233-1491911889:677568..677740Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1491911889:677117..677270TCONS_00053676-exon-scaffold_233-1491911889:677117..677270Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1491911889:676771..677012TCONS_00053676-exon-scaffold_233-1491911889:676771..677012Clytia hemisphaericaexon
TCONS_00053676-exon-scaffold_233-1491911889:675583..676604TCONS_00053676-exon-scaffold_233-1491911889:675583..676604Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:675583..687099 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.8154	35.7073	53.5882	59.7647	3.61804	1.80816	1.45515	2.25834	12.1514	19.1024	15.9533	16.6846	29.8489	28.2446	7.75364	6.82638	13.5552	19.6301	17.3925	13.8797	41.3404	39.2891	22.6585	26.5238	0.737138	2.93167	34.7635	41.2541	14.0154	13.7577
Blast
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BLAST of TCONS_00053676 vs. Swiss-Prot (Human)
Match: SC5A7 (High affinity choline transporter 1 OS=Homo sapiens GN=SLC5A7 PE=1 SV=1)

HSP 1 Score: 485.337 bits (1248), Expect = 3.837e-161
Identity = 284/553 (51.36%), Postives = 380/553 (68.72%), Query Frame = 3 
Query:  336 NVAGLISIIIFYLAILGIGLFAAWRKNKHTKENAQTTQDETNEVILAGRTIGMFIGCFTMTATWVGGGYINGTAESVYNDG--LVWAQAPWGYATSLAMGGFFFARKMREAEYITMLDPLQDKYGRVMGAFLYIPAFLGETFWSASILAALGATLTVILGLNMNISVIVSACIAVGYTFFGGLYSVAYTDVVQLICIAVGLWLTVPFSLTNENVESIG------ARKEEWLGQLYGAKVGKWIDYAFLLICGGIPWQVYFQRVLSSKSAHRAQILSFVAAFGCIVLAIPAVLIGAAAKSADWGAVSGAVDANLVTNKTGEWVITDTRLVLPMVLQYLAPGWVSFIGLGXXXXXXXXXXXXXXXXXXXMFGHNIYKLIIRKNASANEXXXXXXXXXXXXXXMATLVGLTVDSIYALFHLCSDLVFVILFPQLVGAVHIQDVNTYGSICAYIVGLFLRITGGEELIGFPATFKYP-YYDETYSNGKGSQNFPFRTLAMIISFITLVSVSKLAYYLFDNEILGENYD-FLGVLERRRNLAGKKGRRGEDDALPLQE 1964
            +V GLI+II+FYL IL +G++AAWR      +N+ + ++ +  +I+ GR IG+ +G FTMTATWVGGGYINGTAE+VY  G  L WAQAP GY+ SL +GG FFA+ MR   Y+TMLDP Q  YG+ MG  L+IPA +GE FW+A+I +ALGAT++VI+ ++M+ISVI+SA IA  YT  GGLYSVAYTDVVQL CI VGLW++VPF+L++  V  IG        ++ WLG +  ++V  W+D   LL+ GGIPWQ YFQRVLSS SA  AQ+LSF+AAFGC+V+AIPA+LIGA   S DW   +      L   KT E    +  ++LP+VLQYL P ++SF GLGA+SAAVMSSADSS+LSASSMF  NIY+L  R+NAS  EI+WV+RI +   G  AT + L   ++Y L++L SDLV++++FPQL+  + ++  NTYG++  Y+ GLFLRITGGE  +       YP YY +   NG  +Q FPF+TLAM+ SF+T + +S LA YLF++  L    D F  V+ R       K    +++ + L E
Sbjct:    4 HVEGLIAIIVFYLLILLVGIWAAWRT-----KNSGSAEERSEAIIVGGRDIGLLVGGFTMTATWVGGGYINGTAEAVYVPGYGLAWAQAPIGYSLSLILGGLFFAKPMRSKGYVTMLDPFQQIYGKRMGGLLFIPALMGEMFWAAAIFSALGATISVIIDVDMHISVIISALIATLYTLVGGLYSVAYTDVVQLFCIFVGLWISVPFALSHPAVADIGFTAVHAKYQKPWLGTVDSSEVYSWLDSFLLLMLGGIPWQAYFQRVLSSSSATYAQVLSFLAAFGCLVMAIPAILIGAIGASTDWNQTA----YGLPDPKTTE----EADMILPIVLQYLCPVYISFFGLGAVSAAVMSSADSSILSASSMFARNIYQLSFRQNASDKEIVWVMRITVFVFGASATAMALLTKTVYGLWYLSSDLVYIVIFPQLLCVLFVKGTNTYGAVAGYVSGLFLRITGGEPYLYLQPLIFYPGYYPD--DNGIYNQKFPFKTLAMVTSFLTNICISYLAKYLFESGTLPPKLDVFDAVVARHSEENMDKTILVKNENIKLDE 541
The following BLAST results are available for this feature:
BLAST of TCONS_00053676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC5A73.837e-16151.36High affinity choline transporter 1 OS=Homo sapien... [more]
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