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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053668 ID=TCONS_00053668|Name=TCONS_00053668|organism=Clytia hemisphaerica|type=transcript|length=1004bp
AGACATCACGGCACACACGAAGGAATGTTGACCTGTCTTTGCATATAGAC
AAGAATATAAAGTCACAAAGAGAACGCTAAAATAACAAAGCTTGATTTTA
CATGCTCAGAAACCTTAACTTTGTTTTGTTCAAGATAATAAAGTTCTTGt
gaaatttaaaacaatttaCAGTTGAACGCTGTGCAATAATGAAGATAACC
GTGTTTATAGCTTATTTCGTCGCCGTGAAGCTCGTCTATGGTTCGTCATA
CATTTGTACAGATAAAGATTGTGTTGAGAAAAACTTCGATTGCAAAAATG
AATGTACTCTGAAGTGGATCACTCGAATCTTACCAACGCAAGCTTCCAAG
CCACCTGGATGGATAGGAATCGATTGTAATGCATGTAGAGGATACCTTCG
TTCAAAAAACGCAATGATCAAACATCACTGCAAGTATGGATGCCAGGCTA
ACGGTTTGAAGCCACCTTTCTTCACCAAAGTCACAACGCGTACCCCGACA
CCTGCTCCTACCAGGAAAACCTCTAAACAGACAATCACTAAACAATCGCA
AGATACAAAGACAATAGACAAAGCTCAAACTACTATCACAACAAGCACAT
CACCACAAGGCCCGTCCTCTTCTTCGCTCCTCACTATGTTCAAACGAGAA
ACTATCAAAAACTCAAAAGTAGATCATATATCATTTCTTTGGGTTTTATG
TGGCATTCTTGCTTCTTGTGTGATCTTGATTGGTTCTGTAGTCTTGTTCA
CCACTATTTGGAAACGTTTGAATGTAGGAATGAacaataaaattggaatt
agTGACGTCATTATTCATAAACCAACTAATCAGAAGAAGGCAACTGTCTA
CGTCATCACGTAATATGATTAAAACTTTTCACTTGTGTTCACGGACATAT
TCTAAAATTGATAATGATGGTCAAAACtatttataaatatatttatttta
aaacgcAGGCGGATTTTTGTAAATTATAATGACAAAGGAATAAGAAAACA
TTCT Run BLAST on NCBI protein sequence of TCONS_00053668-protein >TCONS_00053668-protein ID=TCONS_00053668-protein|Name=TCONS_00053668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MKITVFIAYFVAVKLVYGSSYICTDKDCVEKNFDCKNECTLKWITRILPT
QASKPPGWIGIDCNACRGYLRSKNAMIKHHCKYGCQANGLKPPFFTKVTT
RTPTPAPTRKTSKQTITKQSQDTKTIDKAQTTITTSTSPQGPSSSSLLTM
FKRETIKNSKVDHISFLWVLCGILASCVILIGSVVLFTTIWKRLNVGMNN
KIGISDVIIHKPTNQKKATVYVIT Run BLAST on NCBI transcript from alignment at scaffold_233:617081..618177- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053668 ID=TCONS_00053668|Name=TCONS_00053668|organism=Clytia hemisphaerica|type=transcript|length=1097bp|location=Sequence derived from alignment at scaffold_233:617081..618177- (Clytia hemisphaerica)
AGACATCACGGCACACACGAAGGAATGTTGACCTGTCTTTGCATATAGAC
AAGAATATAAAGTCACAAAGAGAACGCTAAAATAACAAAGCTTGATTTTA
CATGCTCAGAAACCTTAACTTTGTTTTGTTCAAGATAATAAAGTTCTTGT
GAAATTTAAAACAATTTACAGTTGAACGCTGTGCAATAATGAAGATAACC
GTGTTTATAGCTTATTTCGTCGCCGTGAAGCTCGTCTATGGTAAGTACAT
ACGACAACACATTCAGTTTGTAAATCAGCCGATCGTTTCGTTTTAAACTA
TCAGCAATGATGTTCCATTTTCATCTTTTCTAGGTTCGTCATACATTTGT
ACAGATAAAGATTGTGTTGAGAAAAACTTCGATTGCAAAAATGAATGTAC
TCTGAAGTGGATCACTCGAATCTTACCAACGCAAGCTTCCAAGCCACCTG
GATGGATAGGAATCGATTGTAATGCATGTAGAGGATACCTTCGTTCAAAA
AACGCAATGATCAAACATCACTGCAAGTATGGATGCCAGGCTAACGGTTT
GAAGCCACCTTTCTTCACCAAAGTCACAACGCGTACCCCGACACCTGCTC
CTACCAGGAAAACCTCTAAACAGACAATCACTAAACAATCGCAAGATACA
AAGACAATAGACAAAGCTCAAACTACTATCACAACAAGCACATCACCACA
AGGCCCGTCCTCTTCTTCGCTCCTCACTATGTTCAAACGAGAAACTATCA
AAAACTCAAAAGTAGATCATATATCATTTCTTTGGGTTTTATGTGGCATT
CTTGCTTCTTGTGTGATCTTGATTGGTTCTGTAGTCTTGTTCACCACTAT
TTGGAAACGTTTGAATGTAGGAATGAACAATAAAATTGGAATTAGTGACG
TCATTATTCATAAACCAACTAATCAGAAGAAGGCAACTGTCTACGTCATC
ACGTAATATGATTAAAACTTTTCACTTGTGTTCACGGACATATTCTAAAA
TTGATAATGATGGTCAAAACTATTTATAAATATATTTATTTTAAAACGCA
GGCGGATTTTTGTAAATTATAATGACAAAGGAATAAGAAAACATTCT Coding sequence (CDS) from alignment at scaffold_233:617081..618177- >TCONS_00053668 ID=TCONS_00053668|Name=TCONS_00053668|organism=Clytia hemisphaerica|type=CDS|length=1350bp|location=Sequence derived from alignment at scaffold_233:617081..618177- (Clytia hemisphaerica)
GTTCGTCATACATTTGTACAGATAAAGATTGTGTTGAGAAAAACTTCGAT
TGCAAAAATGAATGTACTCTGAAGTGGATCACTCGAATCTTACCAACGCA
AGCTTCCAAGCCACCTGGATGGATAGGAATCGATTGTAATGCATGTAGAG
GATACCTTCGTTCAAAAAACGCAATGATCAAACATCACTGCAAGTATGGA
TGCCAGGCTAACGGTTTGAAGCCACCTTTCTTCACCAAAGTCACAACGCG
TACCCCGACACCTGCTCCTACCAGGAAAACCTCTAAACAGACAATCACTA
AACAATCGCAAGATACAAAGACAATAGACAAAGCTCAAACTACTATCACA
ACAAGCACATCACCACAAGGCCCGTCCTCTTCTTCGCTCCTCACTATGTT
CAAACGAGAAACTATCAAAAACTCAAAAGTAGATCATATATCATTTCTTT
GGGTTTTATGTGGCATTCTTGCTTCTTGTGTGATCTTGATTGGTTCTGTA
GTCTTGTTCACCACTATTTGGAAACGTTTGAATGTAGGAATGAACAATAA
AATTGGAATTAGTGACGTCATTATTCATAAACCAACTAATCAGAAGAAGG
CAACTGTCTACGTCATCACGTAAATGAAGATAACCGTGTTTATAGCTTAT
TTCGTCGCCGTGAAGCTCGTCTATGGTTCGTCATACATTTGTACAGATAA
AGATTGTGTTGAGAAAAACTTCGATTGCAAAAATGAATGTACTCTGAAGT
GGATCACTCGAATCTTACCAACGCAAGCTTCCAAGCCACCTGGATGGATA
GGAATCGATTGTAATGCATGTAGAGGATACCTTCGTTCAAAAAACGCAAT
GATCAAACATCACTGCAAGTATGGATGCCAGGCTAACGGTTTGAAGCCAC
CTTTCTTCACCAAAGTCACAACGCGTACCCCGACACCTGCTCCTACCAGG
AAAACCTCTAAACAGACAATCACTAAACAATCGCAAGATACAAAGACAAT
AGACAAAGCTCAAACTACTATCACAACAAGCACATCACCACAAGGCCCGT
CCTCTTCTTCGCTCCTCACTATGTTCAAACGAGAAACTATCAAAAACTCA
AAAGTAGATCATATATCATTTCTTTGGGTTTTATGTGGCATTCTTGCTTC
TTGTGTGATCTTGATTGGTTCTGTAGTCTTGTTCACCACTATTTGGAAAC
GTTTGAATGTAGGAATGAACAATAAAATTGGAATTAGTGACGTCATTATT
CATAAACCAACTAATCAGAAGAAGGCAACTGTCTACGTCATCACGTAAAT
GAAGATAACCGTGTTTATAGCTTATTTCGTCGCCGTGAAGCTCGTCTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053668-exon-scaffold_233-1575043694:617938..618177 | TCONS_00053668-exon-scaffold_233-1575043694:617938..618177 | Clytia hemisphaerica | exon |
| TCONS_00053668-exon-scaffold_233-1575043694:617081..617844 | TCONS_00053668-exon-scaffold_233-1575043694:617081..617844 | Clytia hemisphaerica | exon |
| TCONS_00053668-exon-scaffold_233-1510915933:617938..618177 | TCONS_00053668-exon-scaffold_233-1510915933:617938..618177 | Clytia hemisphaerica | exon |
| TCONS_00053668-exon-scaffold_233-1510915933:617081..617844 | TCONS_00053668-exon-scaffold_233-1510915933:617081..617844 | Clytia hemisphaerica | exon |
| TCONS_00053668-exon-scaffold_233-1491911889:617938..618177 | TCONS_00053668-exon-scaffold_233-1491911889:617938..618177 | Clytia hemisphaerica | exon |
| TCONS_00053668-exon-scaffold_233-1491911889:617081..617844 | TCONS_00053668-exon-scaffold_233-1491911889:617081..617844 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:617081..618177 - |
Blast
The following BLAST results are available for this feature:
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