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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053666 ID=TCONS_00053666|Name=TCONS_00053666|organism=Clytia hemisphaerica|type=transcript|length=1329bp
ATCCAAAGAAGAACACCAAGATGCATATTATGTGGCTTCTTGTCCACCCC
TTACTCATTCTAAACCTACTCAAAGGATCTTTTGGTAAGAGCCTCGACCT
CATTGGTAAACACAAGAAGACCACTCTAATACCATACCATACCATACAAA
CACCAAAGCTTCAACAATGCTTCTCGATATGCCATTATAGTAAGAAATGT
CGTGTAATGGAAACGACCCAAACAAATTCATTCAATTGTAAATTCTTCGA
TGTTACATTGCAAGCCTCAGATATTACTGGCCCGGATCTTAACACAAATA
TTTATGCTGAAACACGCAACTGTCAAGATTTGTACAATATCGGAGTACGG
GCATCAGGAGATTACCACCTCAATCTTTTTGGTGATGGATACGAATATCT
ATTGTTTTGTCATTTTGATGCAGATGGAGGATGGATCGTTATACAAAGAC
ACATTGATAATGAATTCTCTTTTCATCGCCAATGGGACGTATACAAAGAA
GGATTTGGTGACTCTAAAGTTTCTGGTTGGGTTTAGAACTAATCCATAAA
ATCACCCGAGATCAATCTCAACAAGTCAAGATTGAAGCATTATCTTTTAG
TGGCGATTCTGCTATGGCGAAGTATGGTGCATTTTCAGTCGCAAGCGAAG
ATAAAAACTATCTTTTATCTGTTGATGGTTTCGATGCAATCGCAAGTAAC
AATATggatattttaaaatattccaTTGGAATGGAATTCAGCACCTTGGA
AAGAGATAACGATAATTATGAACATAATTGTGCAAATGGTTGGAATAGTA
GAGGTGGCTGGTGGTACGATACATGTGGGGATTTCATGCCAAATGCTCAG
TGGTATCCAGAAGAACAAGCATACAAACCGGTTGGCGATGGATGGAAGGG
TATGAGGTATGGACCCATTACTGAATCGTGGACTTTGAAATCAACACTGA
TATTGATCAAACCAAAAGACAATTAATCGAACTGTATTGTTCAAATTCAT
GAAATGAATTCTCTGTTCAAAAAAAGATGCAGCGTGCCTTTTGCCGAAAA
AGATAAGCGAAAGAGACTTGGCTCTTTTCAATTGACGGCAGATTTTGGTG
TCAGTACTGTGGTAGTTGTACTTTGGCCAAAATCTTgactttaaaattat
ttaatactgataaaaaatctggaagaaaatatttacagcAGACATACACC
AAGGGCATGTGTGTTAGCGAAACTTTGCTTGGTAATTAAACAGGATCTGC
TTGGATATTATGTAAAATGCAATAATTTAACGTATTGTGAAATGTTATTT
ATGTATTTCAACGTCATCAAATAGGGCAT Run BLAST on NCBI transcript from alignment at scaffold_233:580385..582064- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053666 ID=TCONS_00053666|Name=TCONS_00053666|organism=Clytia hemisphaerica|type=transcript|length=1680bp|location=Sequence derived from alignment at scaffold_233:580385..582064- (Clytia hemisphaerica)
ATCCAAAGAAGAACACCAAGATGCATATTATGTGGCTTCTTGTCCACCCC
TTACTCATTCTAAACCTACTCAAAGGATCTTTTGGTAAGAGCCTCGACCT
CATTGGTAAACACAAGAAGACCACTCTAATACCATACCATACCATACAAA
CACCAAAGCTTCAACAATGCTTCTCGATATGCCATTATAGTAAGAAATGT
CGTGTAATGGAAACGACCCAAACAAATTCATTCAATTGTAAATTCTTCGA
TGTTACATTGCAAGCCTCAGATATTACTGGCCCGGATCTTAACACAAATA
TTTATGCTGAAACACGCAACTGTCAAGATTTGTACAATATCGGAGTACGG
GCATCAGGAGATTACCACCTCAATCTTTTTGGTGATGGATACGAATATCT
ATTGTTTTGTCATTTTGATGCAGATGGAGGATGGATCGTTATACAAAGAC
ACATTGATAATGAATTCTCTTTTCATCGCCAATGGGACGTATACAAAGAA
GGATTTGGTGACTCTAAAGGTACTCTTTCTTTTCTAGTTCACTTCAACCT
AGATAAGGTTGTATTGCATAATGTTGTGATCTCTCTCGTGATACGCAAAT
TAAAATTACACTTTCTTTTATAAGGACAAGAAAATTTTTGTTAAGGTTTT
GGCAATTTTAACTCAAATAGTTCCTGCTATCCTGTCCTCGCTTTTAGGGA
AAAGTTGGAGTATTTCTAGAGATAACAACCAACTTCACCCTTCCTTAGTT
AATAATTTGCATAAAATTCCGCACAGGCTTATTCTTAAATTGTACTTATT
TTTTGACGTTTGAGTGTAAGATGGAACAAGATAATTATATCTAAACTTAC
TTTCTTATTCATATAGGAAGTTTCTGGTTGGGTTTAGAACTAATCCATAA
AATCACCCGAGATCAATCTCAACAAGTCAAGATTGAAGCATTATCTTTTA
GTGGCGATTCTGCTATGGCGAAGTATGGTGCATTTTCAGTCGCAAGCGAA
GATAAAAACTATCTTTTATCTGTTGATGGTTTCGATGCAATCGCAAGTAA
CAATATGGATATTTTAAAATATTCCATTGGAATGGAATTCAGCACCTTGG
AAAGAGATAACGATAATTATGAACATAATTGTGCAAATGGTTGGAATAGT
AGAGGTGGCTGGTGGTACGATACATGTGGGGATTTCATGCCAAATGCTCA
GTGGTATCCAGAAGAACAAGCATACAAACCGGTTGGCGATGGATGGAAGG
GTATGAGGTATGGACCCATTACTGAATCGTGGACTTTGAAATCAACACTG
ATATTGATCAAACCAAAAGACAATTAATCGAACTGTATTGTTCAAATTCA
TGAAATGAATTCTCTGTTCAAAAAAAGATGCAGCGTGCCTTTTGCCGAAA
AAGATAAGCGAAAGAGACTTGGCTCTTTTCAATTGACGGCAGATTTTGGT
GTCAGTACTGTGGTAGTTGTACTTTGGCCAAAATCTTGACTTTAAAATTA
TTTAATACTGATAAAAAATCTGGAAGAAAATATTTACAGCAGACATACAC
CAAGGGCATGTGTGTTAGCGAAACTTTGCTTGGTAATTAAACAGGATCTG
CTTGGATATTATGTAAAATGCAATAATTTAACGTATTGTGAAATGTTATT
TATGTATTTCAACGTCATCAAATAGGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053666-exon-scaffold_233-1575043694:581546..582064 | TCONS_00053666-exon-scaffold_233-1575043694:581546..582064 | Clytia hemisphaerica | exon |
| TCONS_00053666-exon-scaffold_233-1575043694:580385..581194 | TCONS_00053666-exon-scaffold_233-1575043694:580385..581194 | Clytia hemisphaerica | exon |
| TCONS_00053666-exon-scaffold_233-1510915933:581546..582064 | TCONS_00053666-exon-scaffold_233-1510915933:581546..582064 | Clytia hemisphaerica | exon |
| TCONS_00053666-exon-scaffold_233-1510915933:580385..581194 | TCONS_00053666-exon-scaffold_233-1510915933:580385..581194 | Clytia hemisphaerica | exon |
| TCONS_00053666-exon-scaffold_233-1491911889:581546..582064 | TCONS_00053666-exon-scaffold_233-1491911889:581546..582064 | Clytia hemisphaerica | exon |
| TCONS_00053666-exon-scaffold_233-1491911889:580385..581194 | TCONS_00053666-exon-scaffold_233-1491911889:580385..581194 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:580385..582064 - |
Blast
BLAST of TCONS_00053666 vs. Swiss-Prot (Human)
Match: ANGP1 (Angiopoietin-1 OS=Homo sapiens GN=ANGPT1 PE=1 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 1.212e-25 Identity = 51/151 (33.77%), Postives = 79/151 (52.32%), Query Frame = 2
Query: 521 FWLGLELIHKITRDQSQQVKIEALSFSGDSAMAKYGAFSVASEDKNYLLSVDGFDAIASNNMDILKYSIGMEFSTLERDNDNYEHNCANGWNSRGGWWYDTCGDFMPNAQWYPEEQAY-KPVGDGWKGMRYGPITESWTLKSTLILIKPKD 970
+WLG E I IT + ++IE + + G+ A ++Y F + +E +NY L + G A ++ + G +FST + DNDN CA GGWW+D CG N +Y Q + K G W + GP S++L+ST ++I+P D
Sbjct: 355 YWLGNEFIFAITSQRQYMLRIELMDWEGNRAYSQYDRFHIGNEKQNYRLYLKGHTGTAGKQSSLILH--GADFSTKDADNDNCMCKCA--LMLTGGWWFDACGPSNLNGMFYTAGQNHGKLNGIKWHYFK-GP---SYSLRSTTMMIRPLD 497 HSP 2 Score: 53.9138 bits (128), Expect = 1.212e-25 Identity = 28/76 (36.84%), Postives = 37/76 (48.68%), Query Frame = 3
Query: 315 RNCQDLYNIGVRASGDYHLNLFGDGYEYLLFCHFDADGG-WIVIQRHIDNEFSFHRQWDVYKEGFGDSKVSGWV*N 539
R+C D+Y G SG Y + + +FC+ D +GG W VIQ D F R W YK GFG+ W+ N
Sbjct: 284 RDCADVYQAGFNKSGIYTIYINNMPEPKKVFCNMDVNGGGWTVIQHREDGSLDFQRGWKEYKMGFGNPSGEYWLGN 359
The following BLAST results are available for this feature:
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