Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053640 ID=TCONS_00053640|Name=TCONS_00053640|organism=Clytia hemisphaerica|type=transcript|length=3314bpRun BLAST on NCBI protein sequence of TCONS_00053640-protein >TCONS_00053640-protein ID=TCONS_00053640-protein|Name=TCONS_00053640-protein|organism=Clytia hemisphaerica|type=polypeptide|length=502bp MIIPEDEELRNIIDKLANFVARNGPQFEQLTKSKQQDNPKFSFLFGGDYHRun BLAST on NCBI transcript from alignment at scaffold_233:156932..181191- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053640 ID=TCONS_00053640|Name=TCONS_00053640|organism=Clytia hemisphaerica|type=transcript|length=24260bp|location=Sequence derived from alignment at scaffold_233:156932..181191- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_233:156932..181191- >TCONS_00053640 ID=TCONS_00053640|Name=TCONS_00053640|organism=Clytia hemisphaerica|type=CDS|length=18108bp|location=Sequence derived from alignment at scaffold_233:156932..181191- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053640 vs. Swiss-Prot (Human)
Match: CHERP (Calcium homeostasis endoplasmic reticulum protein OS=Homo sapiens GN=CHERP PE=1 SV=3) HSP 1 Score: 128.257 bits (321), Expect = 6.474e-30 Identity = 58/71 (81.69%), Postives = 65/71 (91.55%), Query Frame = 3 Query: 1248 PYFDLPAGLMVPLVKLWDSEYKPIDPKDIRLPIPQPPSERLLAALEAFYSAPSHDRPRDNQGWEKNGLFEF 1460 PYFDLPAGLM PLVKL D EYKP+DPKDIRLP P PPSERLLAA+EAFYS PSHDRPR+++GWE+NGL+EF Sbjct: 646 PYFDLPAGLMAPLVKLEDHEYKPLDPKDIRLPPPMPPSERLLAAVEAFYSPPSHDRPRNSEGWEQNGLYEF 716 HSP 2 Score: 94.3597 bits (233), Expect = 1.977e-19 Identity = 43/75 (57.33%), Postives = 57/75 (76.00%), Query Frame = 1 Query: 1927 ATKTLDSKIEEDNKGHQLLKKMGWGGQG-LGKNEQGVADPIRQGEVRDKMDKFKGVGAEKNDPFENYRKTKSYTY 2148 A DS++ E+NKGHQ+L KMGW G G LG EQG+ DPI+ G+VRDK D++KGVG +DP+ENYR+ KSY++ Sbjct: 831 APPIPDSRLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENYRRNKSYSF 905 HSP 3 Score: 92.4337 bits (228), Expect = 6.702e-19 Identity = 40/62 (64.52%), Postives = 53/62 (85.48%), Query Frame = 3 Query: 96 IIPEDEELRNIIDKLANFVARNGPQFEQLTKSKQQDNPKFSFLFGGDYHQYYKWKVGVEATQ 281 + P+D+ELRN+IDKLA FVARNGP+FE++T KQ+DNPKFSFLFGG+++ YYK K+ +E Q Sbjct: 5 LPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEFYSYYKCKLALEQQQ 66 HSP 4 Score: 91.6633 bits (226), Expect = 1.385e-18 Identity = 41/131 (31.30%), Postives = 73/131 (55.73%), Query Frame = 3 Query: 381 FDIKPFKELLQKLIITCTKDNIQNGKNWIVEHAKTDNQLKKVSQYFLRRMLEENLPFQQKLHIVYLTNDLLHHSRKKDLPHIHDGLEHYVLPMIAMSFHDATAEQQAKLVKVLNIWNTQSFFKEETRELLK 773 D+ F LLQ +I TCTKD I GKNW+ +AK+ + ++ + R+ + F+ +LH++YL ND+LHH ++K + L+ V+P+ SF ++Q K+ ++L +W +F + + L+ Sbjct: 152 LDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQ 282 The following BLAST results are available for this feature:
BLAST of TCONS_00053640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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