|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053636 ID=TCONS_00053636|Name=TCONS_00053636|organism=Clytia hemisphaerica|type=transcript|length=2540bpRun BLAST on NCBI transcript from alignment at scaffold_233:106116..156367- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053636 ID=TCONS_00053636|Name=TCONS_00053636|organism=Clytia hemisphaerica|type=transcript|length=50252bp|location=Sequence derived from alignment at scaffold_233:106116..156367- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053636 vs. Swiss-Prot (Human)
Match: ANAG (Alpha-N-acetylglucosaminidase OS=Homo sapiens GN=NAGLU PE=1 SV=2) HSP 1 Score: 551.977 bits (1421), Expect = 0.000e+0 Identity = 288/679 (42.42%), Postives = 406/679 (59.79%), Query Frame = 1
Query: 280 NMDAFEYQSDSQGKICVTATSGVALASGLYHYLKYYCNIHVSWSGNQLDLASKLPVVEQKVKKTSSDRFRYYQNVCTVSYSSAFWDWARWEKEIDWMALQGINLPLAFTGQEAIWEMVYKEMGLTEPELAEHFSGAAFFAWQRMGNLDGWGGPLPTAWNXXXXXXXXXXXXRMRSFGMTPVLPGFAGHVPKALVFRLFPQAKYTNSSVWNGFGDQYRTA-LLDPLDPLFKKVGVAFIQKQIEIYDSTDHVYNGDVFNEMSPPSSDPKYVSGISAAIYDTMKTADPNAIWLMQAWQF--LSGFWKDDLIQAWLTAVPLGRLVLLDLASEILPIYKRTKGYFGHPFLWCMLENYGGNTRLYGSSQDVIDGIQSTRINYADQMVGIGSTPEGIDQNSINFELLYEMTYRGNEKIDRYDWMHNYIKRRYNDKKGVSLAAWDLLWKEVYNAHGVSNGGSAQGRVTNQKPYLTTKWPTMLWYNPQDVHEALEKLVDAAETLPMTDSLRHDLAKIASTFIEDLLPGTYTMFIDAYQKKNYNEMVANSNALM-EGLKDMDQVLAADRYSLLGNWIESAKKYGADVAEKKNLEFNARNQITLWGPNGQIEDYANKNWAGLISSYYMQRWASFTKYLLECYASKKPYDDKIFKARLMDFEKLWNEENQAFPVKPEGDILQISQTILAKY 2304
+D + ++ V ++GVA A+GL+ YL+ +C HV+WSG+QL L LP V ++ + + +R+RYYQNVCT SYS +WDWARWE+EIDWMAL GINL LA++GQEAIW+ VY +GLT+ E+ E F+G AF AW RMGNL W GPLP +W+ KQL LQ +L +MRSFGMTPVLP FAGHVP+A V R+FPQ T W F Y + LL P DP+F +G F+++ I+ + TDH+Y D FNEM PPSS+P Y++ + A+Y+ M D A+WL+Q W F FW I+A L AVP GRL++LDL +E P+Y RT + G PF+WCML N+GGN L+G+ + V G ++ R+ MVG G PEGI QN + + L+ E+ +R + D W+ ++ RRY + AAW LL + VYN G + G + + ++P L T +WYN DV EA L+ +A +L + + R+DL + +++L+ Y AY K ++ L E L +D+VLA+D LLG+W+E A+ AE E N+R Q+TLWGP G I DYANK AGL+++YY RW F + L++ A P+ F + E+ + Q +P +P GD + +++ I KY
Sbjct: 61 GLDTYSLGGGGAARVRVRGSTGVAAAAGLHRYLRDFCGCHVAWSGSQLRLPRPLPAVPGELTEATPNRYRYYQNVCTQSYSFVWWDWARWEREIDWMALNGINLALAWSGQEAIWQRVYLALGLTQAEINEFFTGPAFLAWGRMGNLHTWDGPLPPSWHIKQLYLQHRVLDQMRSFGMTPVLPAFAGHVPEA-VTRVFPQVNVTKMGSWGHFNCSYSCSFLLAPEDPIFPIIGSLFLRELIKEF-GTDHIYGADTFNEMQPPSSEPSYLAAATTAVYEAMTAVDTEAVWLLQGWLFQHQPQFWGPAQIRAVLGAVPRGRLLVLDLFAESQPVYTRTASFQGQPFIWCMLHNFGGNHGLFGALEAVNGGPEAARLFPNSTMVGTGMAPEGISQNEVVYSLMAELGWRKDPVPDLAAWVTSFAARRYGVSHPDAGAAWRLLLRSVYNCSGEACRGHNRSPLV-RRPSLQMN--TSIWYNRSDVFEAWRLLLTSAPSLATSPAFRYDLLDLTRQAVQELVSLYYEEARSAYLSKELASLLRAGGVLAYELLPALDEVLASDSRFLLGSWLEQARAAAVSEAEADFYEQNSRYQLTLWGPEGNILDYANKQLAGLVANYYTPRWRLFLEALVDSVAQGIPFQQHQFDKNVFQLEQAFVLSKQRYPSQPRGDTVDLAKKIFLKY 734 The following BLAST results are available for this feature:
BLAST of TCONS_00053636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.