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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053569 ID=TCONS_00053569|Name=TCONS_00053569|organism=Clytia hemisphaerica|type=transcript|length=2063bp
GTTTATGAATGCAACTGATACGAAGAGAAGGACgcatgtagaaaaaaact
ttattttgacAAGTTTAAACAAGTTTGGATgagtttttgaaattgaatag
gtCATTAAAATGTCAGCTTCCGAAGAGAACTTTAACAAAGGAGTGCAAGT
TATGGAAAACTTGATGGAAGTTTTGAAACATCTACCAGAGAAATTGGGAA
CGATTGAAGCACTGCGACAAAACTCTCCAGCAACGTGCAGTCCACCGAAA
TTGGTGCTACGCGAGGCTGGCACGCAAACCGAAGATTCGAACGTATATGC
CATTTTATCTACCGTTGTCACTGAGTTGAAAGGTTTGAAAAGCCATGTCA
GCTCTTTGGAAAGCAAATTTGATTGCTTTAGTAGAGAGGTGGTGGATGGT
TTAAACCAGCAGGTGTCTAACCATCACAATCAACGATCGAGTAGTTATGA
AGGCTCACCCACAAGGAGAGAGTTAGACGACTATAATATTGCACCGAGTC
TACTTTCCCCGTCAAGTCTCTGGCCGCAATTCTCAAATCACCAAAGCCAC
AGTGAAAATATCGAAATCGTACAGCCAGAGATCGATCAACCGTTAAACAT
TCAGATCGGATCAGTTTACAACATTAAAAAGGAGATCCCTCCAAGCCAAG
ATGCAATCGTTCAGCCAAATCCTCAAATGATGCTGCTGACAAAACAACCT
GAGGACTCTATCAACCAAAGAAATCGAAGCtatcaacaatcaaatcaaag
taAAAGAAATGCAAAGTTAAGGggacaagaaacaaaaagagGAAGATGTA
TGCGTAACGGATGCGCCATTTTCATACGTCAACAACTTGCAAAATCATAC
ACATCAGAAGAGCTAGCCAGTAGAAGAGTTAATGCTAGTAGACGGACCTA
CCAAAAAGCCGAGATTAATAGTTCTGCTTTGTCACCTAATCGATTGAAAG
TGATCATGAACAGTGCAAAAGCCTTGTATAAAgatgaatttgaaaaactt
catgAGAAGGGAGAACTTAATGAAATCGTGAACTCGAAATGTAGAGCTGT
CAAGTGCAAGCTTAAAAAACTGAAGTGAAATCTGGTGAGATGTATTATAG
GCATTAACAATACGTATAAAAATGCAATGCtatacaaaaacattttccag
acgatttttcattgcattcgaatttataaaatcaacatttttctttggaa
aatataaaattatatgtaatacataataaatttttgggatgagctggagt
ttttataagatacttaactaattggtcatttgaagtaatagagatgacgc
gttctatagaaaaagtaataagattgtttttattacaagctaacgaccaa
ccaaatcacattagagcttgtaaaaactccagcttgtcccaaattTTCAC
GACCTTCATTATGACTAGCTAAAAAATTTTTAAGACTCAAATACGCTCAT
GCTATGCTTTTGTAATGacgtaccttaagtggataaattttggcggggat
taaatttggcgaatttgacGACTTGTgccaaaatttgccaaattatatcc
ttgccaaaatttccacattcggcaattcgccaaattaaatccccgccaaa
tttaacaaaaagagaattatgtgaaaaatcacaactttttagtatatttt
tgagtaattttcacccatttcagtgtgacaaaatttccaattcacCAAAT
TAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNgccaaattttacgaaattgatctatcgccaaattaaatc
cccaccaaaaatcgtattttggccaatcgccaaattaaatccacgccaaa
atttatccacttacgGTATTACATAGATGATTTACATATTGACAGTATAC
AGTAAATTATTATCTGAAATTTTGTAAACTGAGGCTCATTTGAAATTATG
CTTGTCAATACTAAagttatttcaagattttataaaaaacatgcgTATTT
ATGTTCAAAGattaaaataaacattttctgaatgaaaagaaatgaaattc
ttTCTGGTTCTAT Run BLAST on NCBI protein sequence of TCONS_00053569-protein >TCONS_00053569-protein ID=TCONS_00053569-protein|Name=TCONS_00053569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MSASEENFNKGVQVMENLMEVLKHLPEKLGTIEALRQNSPATCSPPKLVL
REAGTQTEDSNVYAILSTVVTELKGLKSHVSSLESKFDCFSREVVDGLNQ
QVSNHHNQRSSSYEGSPTRRELDDYNIAPSLLSPSSLWPQFSNHQSHSEN
IEIVQPEIDQPLNIQIGSVYNIKKEIPPSQDAIVQPNPQMMLLTKQPEDS
INQRNRSYQQSNQSKRNAKLRGQETKRGRCMRNGCAIFIRQQLAKSYTSE
ELASRRVNASRRTYQKAEINSSALSPNRLKVIMNSAKALYKDEFEKLHEK
GELNEIVNSKCRAVKCKLKKLK Run BLAST on NCBI transcript from alignment at scaffold_233:699817..702877+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053569 ID=TCONS_00053569|Name=TCONS_00053569|organism=Clytia hemisphaerica|type=transcript|length=3061bp|location=Sequence derived from alignment at scaffold_233:699817..702877+ (Clytia hemisphaerica)
GTTTATGAATGCAACTGATACGAAGAGAAGGACgcatgtagaaaaaaact
ttattttgacAAGTTTAAACAAGTTTGGATgagtttttgaaattgaatag
GTATGTTTTAAGTGTATCTAGCAACTTACGATTTTTACGTTAGTGAACAT
GTCTTTCTTACGTACATATAAATAATCTCTTGAAATGTCTTTATTGAAAG
ATGAGAGAGGAGAACGGTTATATGGAGTAATACGATTGTAATAAGAGTAT
TTGAAAACGGAAAGAAAGTAATAGATACGAACTGAAAGAAAAACGATATT
ggttattttaaaataaaaataattcgttTTAAGATTGTTGCTATGGATAA
TGTTATAATACTTCGTATATCCCATGCTTTGTTGTGTAAAAGCGTAAGAT
AAAAGAGAAAGAGAGTTTCTGTAATAATGCATAATAGATTTCTTACTATG
TTAAACGATAAATACACGTTGCAGCAAATGTGctcaaaaatcgaattttt
aacACAGAAATCGTGAAAATATACATAAAGCGATGAAAGAAAGAGATAAA
CGAAATAGAGAATCGTGTGGCAAGAGAAATAATTTGCACTAAGTGTGTGT
TTAGAAATCTTTTCACTAGAATCAAAGGACTTACAAATATTTGTAAGTCG
TTGCTAGAACAGAACTAAGAGTGGGGGAATCTTTCATTTATAATTGTAGA
ATCTCTACATGGGCTTAGAATGTACTCTATATGGTCCTATATGCTTCATA
CAGTCGACAACACTATATCGAAATGACAAGTATTGCCTTGAaggggaaat
atttcccgaagaGAAGTAATATTCCCCGGTTAGTAAGGAAATTCACCGGT
TAACCACCTTTTTTTAATTCCATCTTTCCTATATTTTCTTGCTGATTCGG
CACATACTTCCAGAACAGAGCACAAAAAATTGGTGGGTGACGGCCAAATA
ATAGGGAAATTATTTCCTTTTTGGGCTTTCGGGAAATACATCATTCCTGT
GATGGCAGTTCTTGCGATTTCGATATTATGCTGCCGACTGTCTAGCAACC
AATCTATTTTTGAAACCTAAACTTATATtaaatcttctattttattaggt
CATTAAAATGTCAGCTTCCGAAGAGAACTTTAACAAAGGAGTGCAAGTTA
TGGAAAACTTGATGGAAGTTTTGAAACATCTACCAGAGAAATTGGGAACG
ATTGAAGCACTGCGACAAAACTCTCCAGCAACGTGCAGTCCACCGAAATT
GGTGCTACGCGAGGCTGGCACGCAAACCGAAGATTCGAACGTATATGCCA
TTTTATCTACCGTTGTCACTGAGTTGAAAGGTTTGAAAAGCCATGTCAGC
TCTTTGGAAAGCAAATTTGATTGCTTTAGTAGAGAGGTGGTGGATGGTTT
AAACCAGCAGGTGTCTAACCATCACAATCAACGATCGAGTAGTTATGAAG
GCTCACCCACAAGGAGAGAGTTAGACGACTATAATATTGCACCGAGTCTA
CTTTCCCCGTCAAGTCTCTGGCCGCAATTCTCAAATCACCAAAGCCACAG
TGAAAATATCGAAATCGTACAGCCAGAGATCGATCAACCGTTAAACATTC
AGATCGGATCAGTTTACAACATTAAAAAGGAGATCCCTCCAAGCCAAGAT
GCAATCGTTCAGCCAAATCCTCAAATGATGCTGCTGACAAAACAACCTGA
GGACTCTATCAACCAAAGAAATCGAAGCtatcaacaatcaaatcaaagta
AAAGAAATGCAAAGTTAAGGggacaagaaacaaaaagagGAAGATGTATG
CGTAACGGATGCGCCATTTTCATACGTCAACAACTTGCAAAATCATACAC
ATCAGAAGAGCTAGCCAGTAGAAGAGTTAATGCTAGTAGACGGACCTACC
AAAAAGCCGAGATTAATAGTTCTGCTTTGTCACCTAATCGATTGAAAGTG
ATCATGAACAGTGCAAAAGCCTTGTATAAAgatgaatttgaaaaacttca
tgAGAAGGGAGAACTTAATGAAATCGTGAACTCGAAATGTAGAGCTGTCA
AGTGCAAGCTTAAAAAACTGAAGTGAAATCTGGTGAGATGTATTATAGGC
ATTAACAATACGTATAAAAATGCAATGCtatacaaaaacattttccagac
gatttttcattgcattcgaatttataaaatcaacatttttctttggaaaa
tataaaattatatgtaatacataataaatttttgggatgagctggagttt
ttataagatacttaactaattggtcatttgaagtaatagagatgacgcgt
tctatagaaaaagtaataagattgtttttattacaagctaacgaccaacc
aaatcacattagagcttgtaaaaactccagcttgtcccaaattTTCACGA
CCTTCATTATGACTAGCTAAAAAATTTTTAAGACTCAAATACGCTCATGC
TATGCTTTTGTAATGacgtaccttaagtggataaattttggcggggatta
aatttggcgaatttgacGACTTGTgccaaaatttgccaaattatatcctt
gccaaaatttccacattcggcaattcgccaaattaaatccccgccaaatt
taacaaaaagagaattatgtgaaaaatcacaactttttagtatatttttg
agtaattttcacccatttcagtgtgacaaaatttccaattcacCAAATTA
AGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNgccaaattttacgaaattgatctatcgccaaattaaatccc
caccaaaaatcgtattttggccaatcgccaaattaaatccacgccaaaat
ttatccacttacgGTATTACATAGATGATTTACATATTGACAGTATACAG
TAAATTATTATCTGAAATTTTGTAAACTGAGGCTCATTTGAAATTATGCT
TGTCAATACTAAagttatttcaagattttataaaaaacatgcgTATTTAT
GTTCAAAGattaaaataaacattttctgaatgaaaagaaatgaaattctt
TCTGGTTCTAT Coding sequence (CDS) from alignment at scaffold_233:699817..702877+ >TCONS_00053569 ID=TCONS_00053569|Name=TCONS_00053569|organism=Clytia hemisphaerica|type=CDS|length=969bp|location=Sequence derived from alignment at scaffold_233:699817..702877+ (Clytia hemisphaerica)
ATGTCAGCTTCCGAAGAGAACTTTAACAAAGGAGTGCAAGTTATGGAAAA
CTTGATGGAAGTTTTGAAACATCTACCAGAGAAATTGGGAACGATTGAAG
CACTGCGACAAAACTCTCCAGCAACGTGCAGTCCACCGAAATTGGTGCTA
CGCGAGGCTGGCACGCAAACCGAAGATTCGAACGTATATGCCATTTTATC
TACCGTTGTCACTGAGTTGAAAGGTTTGAAAAGCCATGTCAGCTCTTTGG
AAAGCAAATTTGATTGCTTTAGTAGAGAGGTGGTGGATGGTTTAAACCAG
CAGGTGTCTAACCATCACAATCAACGATCGAGTAGTTATGAAGGCTCACC
CACAAGGAGAGAGTTAGACGACTATAATATTGCACCGAGTCTACTTTCCC
CGTCAAGTCTCTGGCCGCAATTCTCAAATCACCAAAGCCACAGTGAAAAT
ATCGAAATCGTACAGCCAGAGATCGATCAACCGTTAAACATTCAGATCGG
ATCAGTTTACAACATTAAAAAGGAGATCCCTCCAAGCCAAGATGCAATCG
TTCAGCCAAATCCTCAAATGATGCTGCTGACAAAACAACCTGAGGACTCT
ATCAACCAAAGAAATCGAAGCtatcaacaatcaaatcaaagtaAAAGAAA
TGCAAAGTTAAGGggacaagaaacaaaaagagGAAGATGTATGCGTAACG
GATGCGCCATTTTCATACGTCAACAACTTGCAAAATCATACACATCAGAA
GAGCTAGCCAGTAGAAGAGTTAATGCTAGTAGACGGACCTACCAAAAAGC
CGAGATTAATAGTTCTGCTTTGTCACCTAATCGATTGAAAGTGATCATGA
ACAGTGCAAAAGCCTTGTATAAAgatgaatttgaaaaacttcatgAGAAG
GGAGAACTTAATGAAATCGTGAACTCGAAATGTAGAGCTGTCAAGTGCAA
GCTTAAAAAACTGAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053569-exon-scaffold_233-1491911889:699817..699916 | TCONS_00053569-exon-scaffold_233-1491911889:699817..699916 | Clytia hemisphaerica | exon |
| TCONS_00053569-exon-scaffold_233-1510915933:699817..699916 | TCONS_00053569-exon-scaffold_233-1510915933:699817..699916 | Clytia hemisphaerica | exon |
| TCONS_00053569-exon-scaffold_233-1575043694:699817..699916 | TCONS_00053569-exon-scaffold_233-1575043694:699817..699916 | Clytia hemisphaerica | exon |
| TCONS_00053569-exon-scaffold_233-1491911889:700915..702877 | TCONS_00053569-exon-scaffold_233-1491911889:700915..702877 | Clytia hemisphaerica | exon |
| TCONS_00053569-exon-scaffold_233-1510915933:700915..702877 | TCONS_00053569-exon-scaffold_233-1510915933:700915..702877 | Clytia hemisphaerica | exon |
| TCONS_00053569-exon-scaffold_233-1575043694:700915..702877 | TCONS_00053569-exon-scaffold_233-1575043694:700915..702877 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:699817..702877 + |
Blast
The following BLAST results are available for this feature:
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