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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053564 ID=TCONS_00053564|Name=TCONS_00053564|organism=Clytia hemisphaerica|type=transcript|length=1448bp
TAAATTTTGTTCAGGAGGAACTCCTATTGCAGCATTCTGGTGCAGTTTTA
GTGATAGCTGGAAATTGCTTAGCTGTAATGCActacaacaaaaattattt
tctttttgactcGCATAGCAGAGACTCTGAAGGCCATCAAATTGAAAGCG
GAATTGGAACTtctgttcttttaaagtttgaCAGGTTACAAGAAATTAAA
CAGTATATAAGATCTGAGTATAAGAACACAAATCTTTTTAACATTATTTA
TctcaaaactgatttttgtaatgagaaaaatataaaaagtactATTTCGA
CAGAAGTCATACGTAGACAAAGAAATGCTTCATATAAGAGATCAGTCGAG
AAAATCAAAGGCACTGAAAAGTATAAAGATTTATtgcaacaaaaaaatgt
ttctcttaAAAGGTTACGTGAAAAAATTCAAGGCACTGATAAGCATGAAC
AAGaaaaggagaagaaaagacaGCGTCTAGAATTGAttaaaggatcagaa
aaacatgaaaatgaaaaggaaaataagcgTAGCGCTGCAAAATCTCTTTA
TAACTATAACAAAAAACTGAATTTAGGAAAAAGGGTTGAGAATTtcaagc
agaaaaaacaagacGGTCCATATTTTATATGTGTAATATGTAACCGAGGC
TTGTATAAAAAAGGAGTAATTACTTTTGATGAAAAGAAGTACACAATTGG
CCTTGACGATTTGGAAATTGATCCTATTGCCTCCTATGACAGCAATTTCT
ATATATGTAAAACTTGtcataaaaaactaattaaaaatgaaattccatGT
CAATCTGTTTCTAATAAACTCCAAGTTTTTAATCTCCCTGACCATTTGAG
TGATATAAGAAAACTGGAAAGAATTTTAGTAGCACAGCGgattttatttt
ccaaagtcaTGATCATGCGcaaaggggaattccctaaaTTGCAGGGTGCT
ATATGCAATGTTCCGATAGAAACACCAAATGTATGTAAGGTTCTTCCTAG
AGGAAATGATAGTAGTGGTATCGTAAATGTTGAATTGAAAAGGAAGTTAT
CCTATAAAAACCCTGTTATTTCTCAACAAGTCAGgcgtcagaaaattttt
gaaattttagattttttagtcAATAATAACCCATTATACCATGATATTAA
TATAGATATGTCAGCTATTGATCAAATCATTGTCAATAATGAACAAAACA
CTAATTTGAGTGATTCCTTGTCAACAAATAGTTCTCTCGCAATGATGTAA
GGTTTATTGATGATTCAACAGTTTGTCTGATAATCAAGCCCTTCGAAGAG
CCATtggaaaatgaatttgaaatgaaaatgagtCTGACGATCCACTCAGT
CAATATCGCTCTGCGACATGTGAAACAGTAATCGTATCTGAAGTACCTAA
TGTAATCGTGGATGATGAAAATGCAatgtaattttttataagaaccag Run BLAST on NCBI protein sequence of TCONS_00053564-protein >TCONS_00053564-protein ID=TCONS_00053564-protein|Name=TCONS_00053564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
NFVQEELLLQHSGAVLVIAGNCLAVMHYNKNYFLFDSHSRDSEGHQIESG
IGTSVLLKFDRLQEIKQYIRSEYKNTNLFNIIYLKTDFCNEKNIKSTIST
EVIRRQRNASYKRSVEKIKGTEKYKDLLQQKNVSLKRLREKIQGTDKHEQ
EKEKKRQRLELIKGSEKHENEKENKRSAAKSLYNYNKKLNLGKRVENFKQ
KKQDGPYFICVICNRGLYKKGVITFDEKKYTIGLDDLEIDPIASYDSNFY
ICKTCHKKLIKNEIPCQSVSNKLQVFNLPDHLSDIRKLERILVAQRILFS
KVMIMRKGEFPKLQGAICNVPIETPNVCKVLPRGNDSSGIVNVELKRKLS
YKNPVISQQVRRQKIFEILDFLVNNNPLYHDINIDMSAIDQIIVNNEQNT
NLSDSLSTNSSLAMM Run BLAST on NCBI transcript from alignment at scaffold_233:546433..549611+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053564 ID=TCONS_00053564|Name=TCONS_00053564|organism=Clytia hemisphaerica|type=transcript|length=3179bp|location=Sequence derived from alignment at scaffold_233:546433..549611+ (Clytia hemisphaerica)
TAAATTTTGTTCAGGAGGAACTCCTATTGCAGCATTCTGGTGCAGTTTTA
GTGATAGCTGGAAATTGCTTAGCTGTAATGCActacaacaaaaattattt
tctttttgactcGCATAGCAGAGACTCTGAAGGCCATCAAATTGAAAGCG
GAATTGGAACTtctgttcttttaaagtttgaCAGGTTACAAGAAATTAAA
CAGTATATAAGATCTGAGTATAAGAACACAAATCTTTTTAACATTATTTA
TctcaaaactgatttttgtaatgagaaaaatataaaaagtactATTTCGA
CAGAAGTCATACGTAGACAAAGAAATGCTTCATATAAGAGATCAGTCGAG
AAAATCAAAGGCACTGAAAAGTATAAAGATTTATtgcaacaaaaaaatgt
ttctcttaAAAGGTTACGTGAAAAAATTCAAGGCACTGATAAGCATGAAC
AAGaaaaggagaagaaaagacaGCGTCTAGAATTGAttaaaggatcagaa
aaacatgaaaatgaaaaggaaaataagcgTAGCGCTGCAAAATCTCTTTA
TAACTATAACAAAAAACTGAATTTAGGAAAAAGGGTTGAGAATTtcaagc
agaaaaaacaagacGGTCCATATTTTATATGTGTAATATGTAACCGAGGC
TTGTATAAAAAAGGAGTAATTACTTTTGATGAAAAGAAGTACACAATTGG
CCTTGACGATTTGGAAATTGATCCTATTGCCTCCTATGACAGCAATTTCT
ATATATGTAAAACTTGtcataaaaaactaattaaaaatgaaattccatGT
CAATCTGTTTCTAATAAACTCCAAGTTTTTAATCTCCCTGACCATTTGAG
TGATATAAGAAAACTGGAAAGAATTTTAGTAGCACAGCGgattttatttt
ccaaagtcaTGATCATGCGcaaaggggaattccctaaaTTGCAGGGTGCT
ATATGCAATGTTCCGATAGAAACACCAAATGTATGTAAGGTTCTTCCTAG
AGGAAATGATAGTAGTGGTATCGTAAATGTTGAATTGAAAAGGAAGTTAT
CCTATAAAAACCCTGTTATTTCTCAACAAGTCAGgcgtcagaaaattttt
gaaattttagattttttagtcAATAAtggggccccccagcggtttgcgtg
aatgtgtgaatgggcttttttggttgcgtgaatgcgtgaaaatcgaaaaa
aaattgcgtgaatgcgtgaattgaaaaaacttgcgtgaacgtgaaaatcc
atatttctattgcgtgaacgcgtgaatttttccttttcacagtttgtaga
aaacccctaggtgcgcacctatcccaaattcaagggatgccaggtgaagg
tgcacaaaaaaatcagcaactttcaaattctctattttgtaaaacaattc
atgatttagatgcgctttctagcaatctagacaccttaaatttccagaat
ttttcgctcgggccaaacatgtcccgaatcttaaataactctaattttcc
ctcttgaaagtgtttgtttaagataaaagcatggttatgcatgatgagtg
attcagggccagggccagggccagccAGGGCCAGAGCCACTTGgggcagg
aggcggccatgacttcaccacgtttttgcaaataaaaagaaacttatttc
aaagaaatttttacccatgatgtagaTTTTCAataacctgatttcttggc
aaaattagtctgaaatggagtcgtatttaagcacatcagagggttaaaat
agattttttttctgtcggcgcaaaacatggttgcgcctccttagtcacta
tgttttcggcccctccacgttaggaaattaattcgcaagccctgattaaa
acctttctttttaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTAT
taagcatcatggtgtcatactcgagttttgacctatttttgataatgttt
aagctattttttgtacaaaaattcgcctgcggcgcatatcttttcactta
gtatcgcgatacgttaactgcagaagcttcaccttttccaaacgatcttg
acaagttagaagaatcaaatattttgcgtgatggcattaaagttgaaaaa
ttacgtaacgctttctatttgggggcttctaatgacgctaccaaacacgg
tgttttatagtcaggtctacaggaaaaaatcattactgagttaagttttt
ctcaagtgcattaccagatccggtcgaataatatctcgagCACAGCcttt
tcatacttttttatgcaaatcgaacgttttactccatagtggcggaaatt
acgtaaattacgtaacttagcgaaatgtgcaagacctctgtttttgacat
tttccccgattttttcagaaaatttcaccgatttcccaaaaaattgggtt
tgcgtaaatttcgagaaaaacttgcgtgaatgcgtgaattgcgaaaaaat
tttgcgtgaatgcgtgaaatttgggtccgctgggggggccNCCCTGTTAT
TTCTCAACAAGTCAGgcgtcagaaaatttttgaaattttagattttttag
tcAATAATAACCCATTATACCATGATATTAATATAGATATGTCAGCTATT
GATCAAATCATTGTCAATAATGAACAAAACACTAATTTGAGTGATTCCTT
GTCAACAAATAGTTCTCTCGCAATGATGTAAGGTTTATTGATGATTCAAC
AGTTTGTCTGATAATCAAGCCCTTCGAAGAGCCATtggaaaatgaatttg
aaatgaaaatgagtCTGACGATCCACTCAGTCAATATCGCTCTGCGACAT
GTGAAACAGTAATCGTATCTGAAGTACCTAATGTAATCGTGGATGATGAA
AATGCAatgtaattttttataagaaccag Coding sequence (CDS) from alignment at scaffold_233:546433..549611+ >TCONS_00053564 ID=TCONS_00053564|Name=TCONS_00053564|organism=Clytia hemisphaerica|type=CDS|length=2496bp|location=Sequence derived from alignment at scaffold_233:546433..549611+ (Clytia hemisphaerica)
AATTTTGTTCAGGAGGAACTCCTATTGCAGCATTCTGGTGCAGTTTTAGT
GATAGCTGGAAATTGCTTAGCTGTAATGCActacaacaaaaattattttc
tttttgactcGCATAGCAGAGACTCTGAAGGCCATCAAATTGAAAGCGGA
ATTGGAACTtctgttcttttaaagtttgaCAGGTTACAAGAAATTAAACA
GTATATAAGATCTGAGTATAAGAACACAAATCTTTTTAACATTATTTATc
tcaaaactgatttttgtaatgagaaaaatataaaaagtactATTTCGACA
GAAGTCATACGTAGACAAAGAAATGCTTCATATAAGAGATCAGTCGAGAA
AATCAAAGGCACTGAAAAGTATAAAGATTTATtgcaacaaaaaaatgttt
ctcttaAAAGGTTACGTGAAAAAATTCAAGGCACTGATAAGCATGAACAA
GaaaaggagaagaaaagacaGCGTCTAGAATTGAttaaaggatcagaaaa
acatgaaaatgaaaaggaaaataagcgTAGCGCTGCAAAATCTCTTTATA
ACTATAACAAAAAACTGAATTTAGGAAAAAGGGTTGAGAATTtcaagcag
aaaaaacaagacGGTCCATATTTTATATGTGTAATATGTAACCGAGGCTT
GTATAAAAAAGGAGTAATTACTTTTGATGAAAAGAAGTACACAATTGGCC
TTGACGATTTGGAAATTGATCCTATTGCCTCCTATGACAGCAATTTCTAT
ATATGTAAAACTTGtcataaaaaactaattaaaaatgaaattccatGTCA
ATCTGTTTCTAATAAACTCCAAGTTTTTAATCTCCCTGACCATTTGAGTG
ATATAAGAAAACTGGAAAGAATTTTAGTAGCACAGCGgattttattttcc
aaagtcaTGATCATGCGcaaaggggaattccctaaaTTGCAGGGTGCTAT
ATGCAATGTTCCGATAGAAACACCAAATGTATGTAAGGTTCTTCCTAGAG
GAAATGATAGTAGTGGTATCGTAAATGTTGAATTGAAAAGGAAGTTATCC
TATAAAAACCCTGTTATTTCTCAACAAGTCAGgcgtcagaaaatttttga
aattttagattttttagtcAATAATAACCCATTATACCATGATATTAATA
TAGATATGTCAGCTATTGATCAAATCATTGTCAATAATGAACAAAACACT
AATTTGAGTGATTCCTTGTCAACAAATAGTTCTCTCGCAATGATGTAAAA
TTTTGTTCAGGAGGAACTCCTATTGCAGCATTCTGGTGCAGTTTTAGTGA
TAGCTGGAAATTGCTTAGCTGTAATGCActacaacaaaaattattttctt
tttgactcGCATAGCAGAGACTCTGAAGGCCATCAAATTGAAAGCGGAAT
TGGAACTtctgttcttttaaagtttgaCAGGTTACAAGAAATTAAACAGT
ATATAAGATCTGAGTATAAGAACACAAATCTTTTTAACATTATTTATctc
aaaactgatttttgtaatgagaaaaatataaaaagtactATTTCGACAGA
AGTCATACGTAGACAAAGAAATGCTTCATATAAGAGATCAGTCGAGAAAA
TCAAAGGCACTGAAAAGTATAAAGATTTATtgcaacaaaaaaatgtttct
cttaAAAGGTTACGTGAAAAAATTCAAGGCACTGATAAGCATGAACAAGa
aaaggagaagaaaagacaGCGTCTAGAATTGAttaaaggatcagaaaaac
atgaaaatgaaaaggaaaataagcgTAGCGCTGCAAAATCTCTTTATAAC
TATAACAAAAAACTGAATTTAGGAAAAAGGGTTGAGAATTtcaagcagaa
aaaacaagacGGTCCATATTTTATATGTGTAATATGTAACCGAGGCTTGT
ATAAAAAAGGAGTAATTACTTTTGATGAAAAGAAGTACACAATTGGCCTT
GACGATTTGGAAATTGATCCTATTGCCTCCTATGACAGCAATTTCTATAT
ATGTAAAACTTGtcataaaaaactaattaaaaatgaaattccatGTCAAT
CTGTTTCTAATAAACTCCAAGTTTTTAATCTCCCTGACCATTTGAGTGAT
ATAAGAAAACTGGAAAGAATTTTAGTAGCACAGCGgattttattttccaa
agtcaTGATCATGCGcaaaggggaattccctaaaTTGCAGGGTGCTATAT
GCAATGTTCCGATAGAAACACCAAATGTATGTAAGGTTCTTCCTAGAGGA
AATGATAGTAGTGGTATCGTAAATGTTGAATTGAAAAGGAAGTTATCCTA
TAAAAACCCTGTTATTTCTCAACAAGTCAGgcgtcagaaaatttttgaaa
ttttagattttttagtcAATAATAACCCATTATACCATGATATTAATATA
GATATGTCAGCTATTGATCAAATCATTGTCAATAATGAACAAAACACTAA
TTTGAGTGATTCCTTGTCAACAAATAGTTCTCTCGCAATGATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053564-exon-scaffold_233-1491911889:546433..547516 | TCONS_00053564-exon-scaffold_233-1491911889:546433..547516 | Clytia hemisphaerica | exon |
| TCONS_00053564-exon-scaffold_233-1510915933:546433..547516 | TCONS_00053564-exon-scaffold_233-1510915933:546433..547516 | Clytia hemisphaerica | exon |
| TCONS_00053564-exon-scaffold_233-1575043694:546433..547516 | TCONS_00053564-exon-scaffold_233-1575043694:546433..547516 | Clytia hemisphaerica | exon |
| TCONS_00053564-exon-scaffold_233-1491911889:549248..549611 | TCONS_00053564-exon-scaffold_233-1491911889:549248..549611 | Clytia hemisphaerica | exon |
| TCONS_00053564-exon-scaffold_233-1510915933:549248..549611 | TCONS_00053564-exon-scaffold_233-1510915933:549248..549611 | Clytia hemisphaerica | exon |
| TCONS_00053564-exon-scaffold_233-1575043694:549248..549611 | TCONS_00053564-exon-scaffold_233-1575043694:549248..549611 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:546433..549611 + |
Blast
The following BLAST results are available for this feature:
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