TCONS_00053555 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053555
Unique NameTCONS_00053555
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length211

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053555 ID=TCONS_00053555|Name=TCONS_00053555|organism=Clytia hemisphaerica|type=transcript|length=211bp
TTTTAATATACTAATTCTTCGTGTGAGAgtaattcaaattttatgacGGA
TTTTCTCTCCATACTGGAGGAATACAAATGTTACAATACATATTTCTTGC
TATACTTATGTTCGCCGAGATACTATCTATATTTGCGATAGAGTAGTAAA
ATGAACTTTGTACATCAATGTTGAACAAGataaaatgGCAGCTCCAAGTC
GCCTTGGTAAT
Run BLAST on NCBI

transcript from alignment at scaffold_233:483924..486212+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053555 ID=TCONS_00053555|Name=TCONS_00053555|organism=Clytia hemisphaerica|type=transcript|length=2289bp|location=Sequence derived from alignment at scaffold_233:483924..486212+ (Clytia hemisphaerica)
TTTTAATATACTAATTCTTCGTGTGAGAgtaattcaaattttatgacGGA
TTTTCTCTCCATACTGGAGGAATACAAATGTTACAATACATATTTCTTGC
TATACTTATGTTCGCCGAGATACTATCTATATTTGCGATAGAGTAGTAAA
ATGAACTTTGTACATCAATGTTGAACAAGGTTAGTACTACAGATCTTTCA
TATAGTTTAGATATAGACCCggaggggggcactcgatctgaaaacgacca
tacgttcggcccaaaatttggcttctaaaatcggacccttacagtgcagt
gaatttccatgaaaaatcatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNgctagatcatgaccaactgaggacgacggta
aatcagcacttttaccgtcctcgattttgcaggtcagaactgcgggtttt
tccaaatcgcttcagtcactcgcTAATATCTTCGCTTTGAGAGTTTTTAA
GGTTGGGCATTAGAGTGCTGACATATCTTTATGACAGTAGTTTTGGAGAT
TCTtctcaatgaagtataagccccaAGAGgtgctagaagcgaatctttaa
cctttctcaggcaagaaaaagtgaagccttagaaTATACGCCGTATTTGT
TGTTGGttggaaaaatctcaaaacttaatgagcgggggggggtggaataa
ataTGTCCTggctggaaaatttttgaaaaggaggctaatacagctgaatt
aggacaaaagaggatactttcaaaaacatttttccaaaaatcaataagcg
gggggggggacggctattaggtacccgagagtatacgAATGAAGTATTAA
TATAAATCACATTTTCATGGTCATTCTATATAGACTTTTCATAGAAACAa
ctcgtattatcatataatgCCTATACTACTGCATTAAACCATGAATTCAT
AAATTCATGATTaaacgcattataaacgactccagtctagtttTGGTCAA
GTCAACGTGTACACTCTTTGTGAATATgcgtttttttatttacaaggACA
CCAGCCTGAGATTTAGGCCCTCAGAACAATAGCTCTATTGTTTGGCACAA
TAGAAATTTAAGAGCAATCTCGGACTCAGCTAAAcatactggttcttata
aataaaaaaagtgcATAATTCCTGACGATCATCGGTTCCTAATTTTCCAA
GTTCTAAACAATGTATTCTGGCGCGAATGTTGTCAAATAACGACTTcctt
ttttcagataaaatgGCAGCTCCAAGTCGCCTTGGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033802XLOC_033802Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053555-exon-scaffold_233-1491911889:483924..484102TCONS_00053555-exon-scaffold_233-1491911889:483924..484102Clytia hemisphaericaexon
TCONS_00053555-exon-scaffold_233-1510915933:483924..484102TCONS_00053555-exon-scaffold_233-1510915933:483924..484102Clytia hemisphaericaexon
TCONS_00053555-exon-scaffold_233-1575043694:483924..484102TCONS_00053555-exon-scaffold_233-1575043694:483924..484102Clytia hemisphaericaexon
TCONS_00053555-exon-scaffold_233-1491911889:486181..486212TCONS_00053555-exon-scaffold_233-1491911889:486181..486212Clytia hemisphaericaexon
TCONS_00053555-exon-scaffold_233-1510915933:486181..486212TCONS_00053555-exon-scaffold_233-1510915933:486181..486212Clytia hemisphaericaexon
TCONS_00053555-exon-scaffold_233-1575043694:486181..486212TCONS_00053555-exon-scaffold_233-1575043694:486181..486212Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:483924..486212 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3.01819	4.73748	0	0	0	0	0	4.08091	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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