|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053525 ID=TCONS_00053525|Name=TCONS_00053525|organism=Clytia hemisphaerica|type=transcript|length=1272bpRun BLAST on NCBI transcript from alignment at scaffold_233:24855..65375+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053525 ID=TCONS_00053525|Name=TCONS_00053525|organism=Clytia hemisphaerica|type=transcript|length=40521bp|location=Sequence derived from alignment at scaffold_233:24855..65375+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053525 vs. Swiss-Prot (Human)
Match: PLCD4 (1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4 OS=Homo sapiens GN=PLCD4 PE=2 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 1.155e-69 Identity = 131/305 (42.95%), Postives = 175/305 (57.38%), Query Frame = 1
Query: 370 KSRLHFTMETKKAAKDWAEGLQYLQMYMGSVQIENSLRPAWLRNAFDKFDHDNNGALTLTEIKNLLTYCNVKIDESKAEETFKKHSNESFGRLPPMKFSEFFYELVSLRRQSFIFERYLTDNKKTWNTQNIYDFLKNEQKIENPDPLDCGYIMNKYGIKNSEQEDS---KAELDLIGFVDYLTSSDNDVIIPEHRDVYQDMTQPLSHYFINSSHNTYLLGGQLQGQSSVEGYVNALKRGCKCVEIDCWDGDNGEPIVYHGHTLTTKILFKDVITAIEQ-NFDPKGYPLILSLENHCSVAQQQTMA 1272
+S L + + A+ W GLQ L + S+ + L WL + F + D + +G ++ E++ LL NV++D+ A F+ G L +F +F+ L +FE + D +K DFL+ EQK DC + I E DS + L + GF+ YL S D D+ P +YQDMTQPL+HYFI SSHNTYL+G QL GQSSVEGY+ ALKRGC+CVE+D WDG +GEP+VYHGHTLT++ILFKDV+ + Q F YP+ILSLE HCS QQQTMA
Sbjct: 99 RSNLDLMANSVEEAQIWMRGLQLLVDLVTSMDHQERL-DQWLSDWFQRGDKNQDGKMSFQEVQRLLHLMNVEMDQEYAFSLFQAADTSQSGTLEGEEFVQFYKALTKRAEVQELFESFSADGQKL-TLLEFLDFLQEEQKER-----DCTSELALELIDRYEPSDSGKLRHVLSMDGFLSYLCSKDGDIFNPACLPIYQDMTQPLNHYFICSSHNTYLVGDQLCGQSSVEGYIRALKRGCRCVEVDVWDGPSGEPVVYHGHTLTSRILFKDVVATVAQYAFQTSDYPVILSLETHCSWEQQQTMA 396 The following BLAST results are available for this feature:
BLAST of TCONS_00053525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.