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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053512 ID=TCONS_00053512|Name=TCONS_00053512|organism=Clytia hemisphaerica|type=transcript|length=471bp
CTGCATTGCTAAAAATGCAACCACACTGGACAAGAACACTGTCGCTTTTT
TATCTGGTTGGGGTAGATTGAGGTTCGGTGCAAGACAATACAAACTGCAA
AAAGCagaaGTTAAAATAGCAGCAAATTCGAAATGTGTCCAAGGCATGAC
ACGTAGGATGATATGTGCAGCTACTAGTTGCGAAGACACATGCCCAGGTG
ATAGTGGTGGCCCTCTTGTCGTAGATCTAAAGAAAAATCAGCAATTCTCT
TTGGCTGGAATCGTAAGCTGGGGTAGAGGGTGCACCTTCCGAAATGTTCA
AGATGTTTATACTAATGTTGCAGCTTTACATCAATGGATACAAGCAGAGC
TAGAATGCAAGCAAGGTAAGTAGAAAAGTGATGTTTACAAAAACCCTCAG
TTTCCAAATCTCTGCTACCATGGTTTTTtagctgtcaacttcgcctTGCA
AAAATGCAGGAGAGCttcaag Run BLAST on NCBI protein sequence of TCONS_00053512-protein >TCONS_00053512-protein ID=TCONS_00053512-protein|Name=TCONS_00053512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
CIAKNATTLDKNTVAFLSGWGRLRFGARQYKLQKAEVKIAANSKCVQGMT
RRMICAATSCEDTCPGDSGGPLVVDLKKNQQFSLAGIVSWGRGCTFRNVQ
DVYTNVAALHQWIQAELECKQGK Run BLAST on NCBI transcript from alignment at scaffold_232:155226..157320- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053512 ID=TCONS_00053512|Name=TCONS_00053512|organism=Clytia hemisphaerica|type=transcript|length=2095bp|location=Sequence derived from alignment at scaffold_232:155226..157320- (Clytia hemisphaerica)
CTGCATTGCTAAAAATGCAACCACACTGGACAAGAACACTGTCGCTTTTT
TATCTGGTTGGGGTAGATTGAGGTTCGGTGCAAGACAATACAAACTGCAA
AAAGCAGAAGTAAAATATTTTTGTCTCTGAGACGAGCAATTTAGAAAATG
AGCATTATGGAGGAGTGTACTTTCCATGTTTCAATAAATAGGATCTCCTT
CACAGACCACATTTTACAAACTAATCGTCTCAGACGATTTTTCCGTCTCA
GCATAGAGGTATAAAGAAAGACAGGAGATGAATTTGTCGGTAATTGGTCA
TTAAAGTCTTTTGATTTCTTTTATGTAATAAATCAAAAGAAATTCTAGGC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAATATACGAGAATAAAATAAAATTTGGCTCCACGA
AATAAGTTTGCGTTCAATTTTGTCATCCATTAAATTTTGTTTTGAAAAGA
TATTTTCTCCAGCCAGAAAATAGAAAGTTCTTTTTAAGCACACAACAATT
TCAGACCCAGGTTTGTAGACAAAAAGTCGCTGGAGAATTTTGGAGGAAAG
TATTAAGCAATAGAGTTCACCTTGAAGAAAATGATGATCGAAAAGTCTTG
TCATTTGATGAAGGATTGCAAAGTTTACAGGCCCTTTTTTAATCCAAATA
TTTTCTTACACCAATGTCAGAAACAATGAATCTCGTCTCATCTTNNNNNN
NNNNNNNNNNNNNNNAACTTAAGTTAGCCAATAAGATTTCACCTATCAAC
AAAAGAGCTTATTAAAAATGCACGATATATGAGATTATGAGCATGCATAC
CTCGTAACTTTTTTAATCGTAGGGCGAGCATGGTTACAATAGCATATTCT
CCTGTTTCTTTATACCTCCATGGTCTCAGTATAAATGAAACTATTTTACT
AAAGCCATTATTATAAAGCCCATAGTTTTTTTCTAATTCGCATTTTTAAC
TAACTAAAGCTTTTTGTCTCTATTCTTTTTTCCCTAAATGTGAGCCATCA
TCAGTAGTAGGCCTGATCAGTAAGAAACAATGCTATGACAGGCAAATTTA
TAACGAAGCTCCTTTGGACCAGTTGCTCGTTACACTCGAAATACATGATG
GCAGAACAAATATGTCTAGGAGTTTTTAGGTAATAACAGAACACGAATCT
CTCGATTGGTATTTCAGGTTAAAATAGCAGCAAATTCGAAATGTGTCCAA
GGCATGACACGTAGGATGATATGTGCAGCTACTAGTTGCGAAGACACATG
CCCAGTAAGAAAAATAATGAAAATATCATACTTTTCTGGTAAATTGTCAC
TGTCCAAAGGCTCGTGAGATCATTTTAAATGGGTTTTTTTAATCTTGTTA
GACCGACAGTCTAAAAAAGTCTGTACAGTAAACTCTATTATTCCATATAC
CTCTATTATTCGAATCTTTCTATAATTTGAACTTGTTTCTACTCCCCGTC
CAAGAGAAACCCTTTTTAAGATACTTTCTATAATTCTCCGTATAATTCGA
ACAAATAAGATTCGCCATTCGAGTTCGAATTATCGAGTTCAACTGTAGTT
TCTATATTCAGTGTTACATGGACTACTCGCGACTTCCCTTATTTAGTTAT
TTACCTCATTTACTTTTAAGGGTGATAGTGGTGGCCCTCTTGTCGTAGAT
CTAAAGAAAAATCAGCAATTCTCTTTGGCTGGAATCGTAAGCTGGGGTAG
AGGGTGCACCTTCCGAAATGTTCAAGATGTTTATACTAATGTTGCAGCTT
TACATCAATGGATACAAGCAGAGCTAGAATGCAAGCAAGGTAAGTAGAAA
AGTGATGTTTACAAAAACCCTCAGTTTCCAAATCTCTGCTACCATGGTTT
TTTAGCTGTCAACTTCGCCTTGCAAAAATGCAGGAGAGCTTCAAG Coding sequence (CDS) from alignment at scaffold_232:155226..157320- >TCONS_00053512 ID=TCONS_00053512|Name=TCONS_00053512|organism=Clytia hemisphaerica|type=CDS|length=1116bp|location=Sequence derived from alignment at scaffold_232:155226..157320- (Clytia hemisphaerica)
GGTGATAGTGGTGGCCCTCTTGTCGTAGATCTAAAGAAAAATCAGCAATT
CTCTTTGGCTGGAATCGTAAGCTGGGGTAGAGGGTGCACCTTCCGAAATG
TTCAAGATGTTTATACTAATGTTGCAGCTTTACATCAATGGATACAAGCA
GAGCTAGAATGCAAGCAAGGTAAGTAGGTTAAAATAGCAGCAAATTCGAA
ATGTGTCCAAGGCATGACACGTAGGATGATATGTGCAGCTACTAGTTGCG
AAGACACATGCCCATGCATTGCTAAAAATGCAACCACACTGGACAAGAAC
ACTGTCGCTTTTTTATCTGGTTGGGGTAGATTGAGGTTCGGTGCAAGACA
ATACAAACTGCAAAAAGCAGAAGGTGATAGTGGTGGCCCTCTTGTCGTAG
ATCTAAAGAAAAATCAGCAATTCTCTTTGGCTGGAATCGTAAGCTGGGGT
AGAGGGTGCACCTTCCGAAATGTTCAAGATGTTTATACTAATGTTGCAGC
TTTACATCAATGGATACAAGCAGAGCTAGAATGCAAGCAAGGTAAGTAGG
TTAAAATAGCAGCAAATTCGAAATGTGTCCAAGGCATGACACGTAGGATG
ATATGTGCAGCTACTAGTTGCGAAGACACATGCCCATGCATTGCTAAAAA
TGCAACCACACTGGACAAGAACACTGTCGCTTTTTTATCTGGTTGGGGTA
GATTGAGGTTCGGTGCAAGACAATACAAACTGCAAAAAGCAGAAGGTGAT
AGTGGTGGCCCTCTTGTCGTAGATCTAAAGAAAAATCAGCAATTCTCTTT
GGCTGGAATCGTAAGCTGGGGTAGAGGGTGCACCTTCCGAAATGTTCAAG
ATGTTTATACTAATGTTGCAGCTTTACATCAATGGATACAAGCAGAGCTA
GAATGCAAGCAAGGTAAGTAGGTTAAAATAGCAGCAAATTCGAAATGTGT
CCAAGGCATGACACGTAGGATGATATGTGCAGCTACTAGTTGCGAAGACA
CATGCCCATGCATTGCTAAAAATGCAACCACACTGGACAAGAACACTGTC
GCTTTTTTATCTGGTTGGGGTAGATTGAGGTTCGGTGCAAGACAATACAA
ACTGCAAAAAGCAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053512-exon-scaffold_232-1575043694:157212..157320 | TCONS_00053512-exon-scaffold_232-1575043694:157212..157320 | Clytia hemisphaerica | exon |
| TCONS_00053512-exon-scaffold_232-1575043694:155867..155953 | TCONS_00053512-exon-scaffold_232-1575043694:155867..155953 | Clytia hemisphaerica | exon |
| TCONS_00053512-exon-scaffold_232-1575043694:155226..155500 | TCONS_00053512-exon-scaffold_232-1575043694:155226..155500 | Clytia hemisphaerica | exon |
| TCONS_00053512-exon-scaffold_232-1510915933:157212..157320 | TCONS_00053512-exon-scaffold_232-1510915933:157212..157320 | Clytia hemisphaerica | exon |
| TCONS_00053512-exon-scaffold_232-1510915933:155867..155953 | TCONS_00053512-exon-scaffold_232-1510915933:155867..155953 | Clytia hemisphaerica | exon |
| TCONS_00053512-exon-scaffold_232-1510915933:155226..155500 | TCONS_00053512-exon-scaffold_232-1510915933:155226..155500 | Clytia hemisphaerica | exon |
| TCONS_00053512-exon-scaffold_232-1491911889:157212..157320 | TCONS_00053512-exon-scaffold_232-1491911889:157212..157320 | Clytia hemisphaerica | exon |
| TCONS_00053512-exon-scaffold_232-1491911889:155867..155953 | TCONS_00053512-exon-scaffold_232-1491911889:155867..155953 | Clytia hemisphaerica | exon |
| TCONS_00053512-exon-scaffold_232-1491911889:155226..155500 | TCONS_00053512-exon-scaffold_232-1491911889:155226..155500 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_232 | supercontig | scaffold_232:155226..157320 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004252 | serine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004252 |
serine-type endopeptidase activity |
Blast
BLAST of TCONS_00053512 vs. Swiss-Prot (Human)
Match: PRS29 (Putative serine protease 29 OS=Homo sapiens GN=PRSS29P PE=5 SV=3) HSP 1 Score: 72.7886 bits (177), Expect = 8.076e-16 Identity = 42/114 (36.84%), Postives = 60/114 (52.63%), Query Frame = 2
Query: 47 FLSGWG---RLRFGARQYKLQKAEVKIAANSKCVQG-------------MTRRMICAATSCEDTCPGDSGGPLVVDLKKNQQFSLAGIVSWGRGCTFRNVQDVYTNVAALHQWI 340
+++GWG R Y+LQ+A V++ N+ C Q + M+CA + D+C GDSGGPLV L+ + + L G+VSWG GCT R+ VYT+V WI
Sbjct: 194 WVTGWGAIIRKESLPPPYRLQQASVQVLENAVCEQPYRNASGHTGDRQLILDDMLCAGSEGRDSCYGDSGGPLVCRLRGS--WRLVGVVSWGYGCTLRDFPGVYTHVQIYVPWI 305
The following BLAST results are available for this feature:
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