TCONS_00053511 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053511
Unique NameTCONS_00053511
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053511 ID=TCONS_00053511|Name=TCONS_00053511|organism=Clytia hemisphaerica|type=transcript|length=807bp
TCCTTATAGTTCCACTATACCGTTACTATAATCCAAAGATCGTAGATCAT
TTCTACACCGCAAGTTGGACCGAACTGGGAAATGGAAAGGACGGTTGGAA
ATTGGAAGGGGTCCAATGCAGAATCATGAAATGTAAAGCGTCTGAAAGCG
TGCCGTTGTATCGTTATTGTAAAAGTGGACTGGACCATTTTTATACAACG
AATATCAAAGAAATCGGAACCGCAACTCCAGGAAATGTTGGAAATCATGG
TTATAAAAGTGAGGGAATCACAGGTTATTGTTATCCCGTGAAGAAAGCAG
GTACCATACCATTGTATCGTTACTGGCATCCACGATTTGTGAACCATTTC
TACACAACTAATGCAAAGGAGATTGGCACCACAACGTCTGGTCAAGTTGG
AAAGTATGGTTATAAATCAGAAGGAATCACATGTtatGTATTTCCAAATT
aacatttgagtttgtttttttgttcacGAGGGTTAAAAGTATAACATTTA
AGTTTGTTTTTTCACGAGGGTTAaaagcattgagtttcaagcccgaaggg
ctagaggtcaatctctttggtaggatttgaagccaacaaatcctaccaaa
gttgcgcggccttgagcgacccgcctggtttttacacaaatgacagattg
aaactaaaatttaccgcttaatttcgaaagatatatcactcgaaaacaaa
ggaattgctagattcaatccgtcatcaaaaatacggcgcatattttaagg
cttcaatttttcttgcctgagaaaggttagagattgacctctagcccttc
gggcttg
Run BLAST on NCBI

protein sequence of TCONS_00053511-protein

>TCONS_00053511-protein ID=TCONS_00053511-protein|Name=TCONS_00053511-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
LIVPLYRYYNPKIVDHFYTASWTELGNGKDGWKLEGVQCRIMKCKASESV
PLYRYCKSGLDHFYTTNIKEIGTATPGNVGNHGYKSEGITGYCYPVKKAG
TIPLYRYWHPRFVNHFYTTNAKEIGTTTSGQVGKYGYKSEGITCYVFPN
Run BLAST on NCBI

transcript from alignment at scaffold_232:148215..149737-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053511 ID=TCONS_00053511|Name=TCONS_00053511|organism=Clytia hemisphaerica|type=transcript|length=1523bp|location=Sequence derived from alignment at scaffold_232:148215..149737- (Clytia hemisphaerica)
TCCTTATAGTTCCACTATACCGTTACTATAATCCAAAGATCGTAGATCAT
TTCTACACCGCAAGTTGGACCGAACTGGGAAATGGAAAGGACGGTTGGAA
ATTGGAAGGGGTCCAATGCAGAATCATGAAATGTAAAGCGTCTGAAAGCG
TGCCGTTGTATCGTTATTGTAAAAGTGGACTGGACCATTTTTATACAACG
AATATCAAAGAAATCGGAACCGCAACTCCAGGTTAGTGGGGGGGTTAGTG
TTCGACATTTAAGCCCATAAAGCTCCCACGTAGGATCAATTTTTCGAACC
GTGGATCACCCCTGTCTACCGGCAAGCATTAGTACGGAACCGACATCTCA
GAATGCTTAGGCTCTTTTTTGATCGGTATTTCAATAAAGCGTTACATTCA
GTCATCGAGCCAGCTCTAGTAATTCTACACGTAATAACATGTGTTGTCGT
AGTAATCGGAGAAAAAGCCGTAAAATTAGCTTGAACTGAGAGAGCTAAAC
GTAAAGCTAGTGTAAGCGTGTAGGAGGCCCCCCAGTGGACCCAAAATTCA
CGCCATCACGCCGTTTTTATCCAAATTTCACGCCATCACGCCACGAAAAA
CCCTCCATAACGCAATCACACCAACCGCTGGGGGGGCCTCGTGTAGTGTC
ATAGGCGACATATTGAATAAACTTAGCAAATCATCCAATTGAATTATGCT
AAAAACTTATTGTATCTTTTCTTTTAACACCCACAGGAAATGTTGGAAAT
CATGGTTATAAAAGTGAGGGAATCACAGGTTATTGTTATCCCGTGAAGAA
AGCAGGTACCATACCATTGTATCGTTACTGGCATCCACGATTTGTGAACC
ATTTCTACACAACTAATGCAAAGGAGATTGGCACCACAACGTCTGGTCAA
GTTGGAAAGTATGGTTATAAATCAGAAGGAATCACATGTTATGTATTTCA
AAATTAACATTTCAGTTTNGAAAGTATGGTTATAAATCAGAAGGAATCAC
ATGTTATGTATTTCCAAATTAACATTTCAGTTTATTTTTTTCACTAGGGT
TAAAAGTATAACATTTGAGTTTTTTTTTTTTACGAGGGTTAAAAGTATAA
CATTTGAGTTTGTTTTTTCACGAGGGTTAAAAGTGAGTTTGTCTTTTCCA
CGAGGGTTAAAATTATAACATTTGAGTTTGTTTTTTTGTTCACGAGGGTT
AAAAGTATAACATTTAAGTTTGTTTTTTCACGAGGGTTAAAAGCATTGAG
TTTCAAGCCCGAAGGGCTAGAGGTCAATCTCTTTGGTAGGATTTGAAGCC
AACAAATCCTACCAAAGTTGCGCGGCCTTGAGCGACCCGCCTGGTTTTTA
CACAAATGACAGATTGAAACTAAAATTTACCGCTTAATTTCGAAAGATAT
ATCACTCGAAAACAAAGGAATTGCTAGATTCAATCCGTCATCAAAAATAC
GGCGCATATTTTAAGGCTTCAATTTTTCTTGCCTGAGAAAGGTTAGAGAT
TGACCTCTAGCCCTTCGGGCTTG

Coding sequence (CDS) from alignment at scaffold_232:148215..149737-

>TCONS_00053511 ID=TCONS_00053511|Name=TCONS_00053511|organism=Clytia hemisphaerica|type=CDS|length=1350bp|location=Sequence derived from alignment at scaffold_232:148215..149737- (Clytia hemisphaerica)
GTATTTCCAAATTAAGAAATGTTGGAAATCATGGTTATAAAAGTGAGGGA
ATCACAGGTTATTGTTATCCCGTGAAGAAAGCAGGTACCATACCATTGTA
TCGTTACTGGCATCCACGATTTGTGAACCATTTCTACACAACTAATGCAA
AGGAGATTGGCACCACAACGTCTGGTCAAGTTGGAAAGTATGGTTATAAA
TCAGAAGGAATCACATGTTATCTTATAGTTCCACTATACCGTTACTATAA
TCCAAAGATCGTAGATCATTTCTACACCGCAAGTTGGACCGAACTGGGAA
ATGGAAAGGACGGTTGGAAATTGGAAGGGGTCCAATGCAGAATCATGAAA
TGTAAAGCGTCTGAAAGCGTGCCGTTGTATCGTTATTGTAAAAGTGGACT
GGACCATTTTTATACAACGAATATCAAAGAAATCGGAACCGCAACTCCAG
GTATTTCCAAATTAAGAAATGTTGGAAATCATGGTTATAAAAGTGAGGGA
ATCACAGGTTATTGTTATCCCGTGAAGAAAGCAGGTACCATACCATTGTA
TCGTTACTGGCATCCACGATTTGTGAACCATTTCTACACAACTAATGCAA
AGGAGATTGGCACCACAACGTCTGGTCAAGTTGGAAAGTATGGTTATAAA
TCAGAAGGAATCACATGTTATCTTATAGTTCCACTATACCGTTACTATAA
TCCAAAGATCGTAGATCATTTCTACACCGCAAGTTGGACCGAACTGGGAA
ATGGAAAGGACGGTTGGAAATTGGAAGGGGTCCAATGCAGAATCATGAAA
TGTAAAGCGTCTGAAAGCGTGCCGTTGTATCGTTATTGTAAAAGTGGACT
GGACCATTTTTATACAACGAATATCAAAGAAATCGGAACCGCAACTCCAG
GTATTTCCAAATTAAGAAATGTTGGAAATCATGGTTATAAAAGTGAGGGA
ATCACAGGTTATTGTTATCCCGTGAAGAAAGCAGGTACCATACCATTGTA
TCGTTACTGGCATCCACGATTTGTGAACCATTTCTACACAACTAATGCAA
AGGAGATTGGCACCACAACGTCTGGTCAAGTTGGAAAGTATGGTTATAAA
TCAGAAGGAATCACATGTTATCTTATAGTTCCACTATACCGTTACTATAA
TCCAAAGATCGTAGATCATTTCTACACCGCAAGTTGGACCGAACTGGGAA
ATGGAAAGGACGGTTGGAAATTGGAAGGGGTCCAATGCAGAATCATGAAA
TGTAAAGCGTCTGAAAGCGTGCCGTTGTATCGTTATTGTAAAAGTGGACT
GGACCATTTTTATACAACGAATATCAAAGAAATCGGAACCGCAACTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033779XLOC_033779Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053511-proteinTCONS_00053511-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053511-exon-scaffold_232-1575043694:149507..149737TCONS_00053511-exon-scaffold_232-1575043694:149507..149737Clytia hemisphaericaexon
TCONS_00053511-exon-scaffold_232-1575043694:148796..149001TCONS_00053511-exon-scaffold_232-1575043694:148796..149001Clytia hemisphaericaexon
TCONS_00053511-exon-scaffold_232-1575043694:148715..148730TCONS_00053511-exon-scaffold_232-1575043694:148715..148730Clytia hemisphaericaexon
TCONS_00053511-exon-scaffold_232-1575043694:148215..148568TCONS_00053511-exon-scaffold_232-1575043694:148215..148568Clytia hemisphaericaexon
TCONS_00053511-exon-scaffold_232-1510915933:149507..149737TCONS_00053511-exon-scaffold_232-1510915933:149507..149737Clytia hemisphaericaexon
TCONS_00053511-exon-scaffold_232-1510915933:148796..149001TCONS_00053511-exon-scaffold_232-1510915933:148796..149001Clytia hemisphaericaexon
TCONS_00053511-exon-scaffold_232-1510915933:148715..148730TCONS_00053511-exon-scaffold_232-1510915933:148715..148730Clytia hemisphaericaexon
TCONS_00053511-exon-scaffold_232-1510915933:148215..148568TCONS_00053511-exon-scaffold_232-1510915933:148215..148568Clytia hemisphaericaexon
TCONS_00053511-exon-scaffold_232-1491911889:149507..149737TCONS_00053511-exon-scaffold_232-1491911889:149507..149737Clytia hemisphaericaexon
TCONS_00053511-exon-scaffold_232-1491911889:148796..149001TCONS_00053511-exon-scaffold_232-1491911889:148796..149001Clytia hemisphaericaexon
TCONS_00053511-exon-scaffold_232-1491911889:148715..148730TCONS_00053511-exon-scaffold_232-1491911889:148715..148730Clytia hemisphaericaexon
TCONS_00053511-exon-scaffold_232-1491911889:148215..148568TCONS_00053511-exon-scaffold_232-1491911889:148215..148568Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_232supercontigscaffold_232:148215..149737 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.151138	0.0723278	0.0913902	0.0807606	0.731419	0.455067	0	0.819812	0.157319	0.317201	0.271847	0.288526	1.52833	2.09529	0.138911	0.184568	0.466233	1.42099	29.9306	16.845	0.196912	0.306776	0.155661	0.518828	0.287983	0.0797999	1.48789	1.85402	0.385689	0.562159
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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