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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053505 ID=TCONS_00053505|Name=TCONS_00053505|organism=Clytia hemisphaerica|type=transcript|length=399bp
gaaaaagaaccaGAGAGCAATTCGTGGAATCACTTGAAAATGATTGGTTT
GATATTCTTGAGCAAAGTTGGTTGCACATTAATGCTGATGATGTTGTTGG
CTTTACCAATGTCTATGGTCGTTATTGGAGTGTCATACAAAGATGTTTGT
CCGATCGAACCATTCATTCCAATCTATCTCATTGTCGGTGGATCATTCGG
TATCGTCAAAATGCTCTCCATCATAATTCAGCGAATCACATATAACGGAG
ATATCTTTCAAAGCGATAAAAGCAACGAGGAGGAGCTTCCAATCGCATGG
TTGTTCGTTGACGGCGTATTAAACTTGTTTTTATTCACGTGGTTCGTGGC
GGGAAACATATGGGTGTATTCCAAATATAAACCAAATTACACGCCCCCG Run BLAST on NCBI protein sequence of TCONS_00053505-protein >TCONS_00053505-protein ID=TCONS_00053505-protein|Name=TCONS_00053505-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
EKEPESNSWNHLKMIGLIFLSKVGCTLMLMMLLALPMSMVVIGVSYKDVC
PIEPFIPIYLIVGGSFGIVKMLSIIIQRITYNGDIFQSDKSNEEELPIAW
LFVDGVLNLFLFTWFVAGNIWVYSKYKPNYTPP Run BLAST on NCBI transcript from alignment at scaffold_232:100378..107063+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053505 ID=TCONS_00053505|Name=TCONS_00053505|organism=Clytia hemisphaerica|type=transcript|length=6686bp|location=Sequence derived from alignment at scaffold_232:100378..107063+ (Clytia hemisphaerica)
gaaaaagaaccaGAGAGCAATTCGTGGAATCACTTGAAAATGATTGGTTT
GATATTCTTGAGCAAAGGTAAATAATTAGAGGAGACGGTCAAAATCTCAT
ATTGAAACATATAGATTATTTCAGATTAAAGAATTAAAGATAAGAATCTG
CCGGGAACACAAAATAACCTTTCGGCTGGTAAGACAGAGCTCTTATTATG
GGCTCTGACCATAATCAGGAAATTTGTTAAGGGATTTGAAGATGAAACTC
TTGTTTTGGGTTCCttgacattttttgacaaaaaattgcaattacaGGTT
GTTTGTTAATTTATTGTGTCAAGAGTATATTTAATTACAAAATTGACGTT
AGGAACTTTgattaaaaagacgttaataaaatgttaatttacactctttt
acaaaaagtgcttagtttcaATGGGCAATTCaccttttttctttcaattt
ttttttttaaattgtccaCCGAGAAAAAAACTATTTGAATTTCTCCGAAG
TGTTGTCAAAATTTATGAATCAAAACTTATGACTGCTTTTCTACGAAAAA
TTGGGacgaaaaactggtcaaaaccATTAAttagatacaccatctaccgc
aaaaattgtttcaaaatcttttttcttcccCGGAAAAAAGGACCTCAagg
ttgaaatactcttcttcgggttattttaaaaagcatgGTACCCCAATTGG
TGCACCAATTGGGGTACTTGTTGGGGTACCACTTTCTGTCCTTAATTTTG
TTAAATGACACTTAATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCATTGATGATTTAATAAAGTTAGATTT
AAGATTGTCACAAAACTTTTGTCACAATTGCCGTTTTCCGACACGAAGTG
AAAATCTACTGCTTTTTAATTAAATCAGCAGCCATCTTGCTTTTCTCCTT
TCCTACTTCAAAcaattacagaccagaataagtAAGACCAGAATAAATTC
AGTAACCAAACCAAACAGTATTCCACTCCAGTAACCAACATAATATTATA
GCTTAAAATCAGGAGAATTGTAAGGTACTGGCTAGTAACATCTTGTtaat
atcttttctttttacatgTCAGAATGCTGACAAAAAATGACACTTTcttg
caaaaatatttaaaaaatattgaaatataataatcGTAAGTCAAATTCCT
CCAAAAAGACTTATTATACTGAAAGTGATGctcgattttaaaattttcag
attcaggaatagttggcctaaagaaaatacttttgttggttacatcataT
CGGACAGAAatctatattttgtacatggcaaatatgaaaaattcactaat
CCATAAGAGCCCCCTTAATTTCCATTGAATACGTACACTTCATTGGCGTG
AAATTTTCGACGAAAATCCTATTCAATTTGAATGAGTAGAATCAGTAGTT
TGAAAGGGGCGGTTCCTTGAGATCCAAATTTTTAAGTTGAAGATTGTATA
ATGAAAATATCTACGCCTTATTTCGATAAACTAAATTGATGTTGTGTCTC
ACAGATGAGAAAATGGCAAAACTAAATAATGTCAAGGAAAGCTAATACAT
TAGCCTTGTGTAGGCTTCATGTTATCACAGCTGGCGAATTTCTTAAATTT
AAATAAAGTATTGACATTGAATAAAATACGCTTTAAGTATAAAAGATGAC
ATGTGTGATTCGTGAAGATTTTCGATGAAAGATTTTTACAGTTTAAAAAA
GAGATGTAGggttttttgaaacatttcaaaagtttctggataaattgaaa
atttcgagaAATGCTTAAAAGCAACTTAGAAAGACAGAGGAATGATCTGC
AGTCTGAATGGTATCTATTTAATTAGTTCAAATTTTAATTGCCTTCTACC
TTTACTTTCTTAATTCataatttttgtgtacatggGAAATAGGGGTGCCT
GAAGATTATTTGTATTATTACAAAAAGATATTTGTATTATTACAAAAAGA
GATAATCGAtattgaagatattctttatatTTTTAGTTGGTTGCACATTA
ATGCTGATGATGTTGTTGGCTTTACCAATGTCTATGGTCGTTATTGATAA
GGACAAAGCTACCATTCAACTTTCTTATACCTGTTAAACGCAACTAATCG
ATTTCTAGCCCTAACCTCTATTTTATATGATAATAAACAgactttacttt
atttttttgtgggAAGCCAAGTAATATAGGACTTTTAAACAATCTTTTAA
TTATTCTCCCGAACACGATGTCCGTAGCTAAGATTTGAACGGAACATTCA
TTCCTTGTTTATGGTCGAGGACATGTCTGTTTCGTTGAAAGTTcattaaa
tctcaaaaattggaTAATCACTGGGAAAAACATAATGTGCCTGAGAGATG
CCTTGTAGACTGTAAACAGTGATTGTGAATTTATGTGAATTCAAATATAT
GAAAAGTCTAATACCATACAccttttttaatttcgcttagcgtagactag
taaactagtcgttgaaaacagacccatatacaaaaaatttaagctccaaa
aaaaaaagaattgaagagatgaggttgcgtgtcttttctgaatttcaacg
actagaagcttcttctctcaaaaaacgttgtttaattttacaaccttttt
taggtttttgagaatccatccaacttttttgactaaatgatatttcatag
taacattaaacatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNgaagtagcttctagtcggttattttccttttctctcacgcgcgctg
aatatttaactagtgtttacattatttgattgacagttttattataaggt
tataagtaatgaccgactagtttactagtctacgcTTAGcgaagtattac
gatagcctttcgcggtggcggcggcggcggtgtcctcggaaaaaaaaatt
agaaaacgaaagtactcgatacggtggacgaacttacTAAATTTAACTTA
CACTTTACACGTTCGTTTagccacggacgattttcgcgcgTTTTTATAGT
GGTCCGATAactgtggagataataaatTACATCAAGCCTTTTTTACGACT
GTATTATTAGCTCCACAGTTTGGAGCGTACGGCTCCATAACTTTCTACAT
TTTTGTAAGCATTCATCGTGAGAATTTTTTCAATCATTAATggctgcttt
tgaaacttgctgctgctgtatcaatttttatcatgttttcttgccttttg
tagagtatttaaagaggtttattattcgtttactactaagtattttatgt
ttgtgtagttactgaatgcaccaataaattgataatgctcagtaagtagA
ATAAAAAGAGTTACTTTTTCACAACATAAAACCCTGCCTCTTCTTCACTA
AAACTACGAACAGCGCAGGtatgatatttttttccttttttcaccagata
gtattgtgttaatagtgaaaccagttgtgacaaacagtcagctTTAGCAA
GTATTCTTTAGAAGTTAATTGAAATTCAGCGATCATTTTCGTAatagaca
gttagtcacactagcttcccgccaaaatgcatatcaaagattaatgctgt
gaaagcgctatatcgtttacttgactctcaagccaaaaaatgcgccgcaa
aacttctaaagggattcatgaaaaaataacccggcgctttttaatgaaaa
taacattttcaaaaactttgagaaattgcctaaaattNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCAAAGCATGGggcgg
caattcggccaccatttcaccaaacctccaaagtcatttgatttgagtta
aggaacggcgtataaaaaaatacaggatttctctttcgattttacagtaa
gtgaaaatacagaccagatatgcaacagtcccatgtttcggcCAATCGTC
TCAAGTTAGAGCAGNtttgaatttcaaatgttttcttcttatatatttca
acatttttgtgtACATGGGAGATGGGGGTGCCTAAAGATCAATTTTATTA
ttacaaaaaattgattgataGTAAAACTTGAAGTATTGCTTTATATTTTT
AGTTGGTTGCACATTAATGCTGATGATGTTGTTGGCTTTACCAATGTCTA
TGGTCGTTATTGGTAAGGACAATGCTACCATTCAACTTTCTTATAGCTGT
CACATGGCAATAAACGGACTTTAATTTATTTAACACGATGTCCATATTTA
CCACGATCGACTACTACCTAAGATTTGAACGGAACATTCATTCCTTTTTT
ATGGCCGAGGACATGTCTGTTTCAGTTGAAAGTTCATTAAGtctcaaaaa
tctgaaaatcactggggaaaaaaaatttgtgccTGGAAGATGCCTTGTAG
GCTATAAACTGTGATTGTTAAGGTTATGATATTGTCTTAATGTGAATTCA
AATATATGAAAAATCTAAATACCATTGATATCTGAAATACCACGCCATAC
CAAAGATAACTCAATATAAATATAGCCTATCGGCTATGGCTGTCAGTTTC
AAAAGTTTccccactcttaaaaatatgttaTCAAAATTGTAATAACTTTA
ATTTATTTCTATAGGAGTGTCATACAAAGATGTTTGTCCGATCGAACCAT
TCATTCCAATCTATCTCATTGTCGGTGGATCATTCGGTATCGTCAAAATG
CTCTCCATCATAATTCAGCGAATCACATATAACGGAGATATCTTTCAAAG
CGATAAAAGCAACGAGGAGGAGCTTCCAATCGCATGGTTGTTCGTTGACG
GCGTATTAAACTTGTTTTTATTCACGTGGTTCGTGGCGGGAAACATATGG
GTGTATTCCAAATATAAACCAAATTACACGCCCCCG Coding sequence (CDS) from alignment at scaffold_232:100378..107063+ >TCONS_00053505 ID=TCONS_00053505|Name=TCONS_00053505|organism=Clytia hemisphaerica|type=CDS|length=1197bp|location=Sequence derived from alignment at scaffold_232:100378..107063+ (Clytia hemisphaerica)
gaaaaagaaccaGAGAGCAATTCGTGGAATCACTTGAAAATGATTGGTTT
GATATTCTTGAGCAAAGTTGGTTGCACATTAATGCTGATGATGTTGTTGG
CTTTACCAATGTCTATGGTCGTTATTGGAGTGTCATACAAAGATGTTTGT
CCGATCGAACCATTCATTCCAATCTATCTCATTGTCGGTGGATCATTCGG
TATCGTCAAAATGCTCTCCATCATAATTCAGCGAATCACATATAACGGAG
ATATCTTTCAAAGCGATAAAAGCAACGAGGAGGAGCTTCCAATCGCATGG
TTGTTCGTTGACGGCGTATTAAACTTGTTTTTATTCACGTGGTTCGTGGC
GGGAAACATATGGGTGTATTCCAAATATAAACCAAATTACACGCCCCCGg
aaaaagaaccaGAGAGCAATTCGTGGAATCACTTGAAAATGATTGGTTTG
ATATTCTTGAGCAAAGTTGGTTGCACATTAATGCTGATGATGTTGTTGGC
TTTACCAATGTCTATGGTCGTTATTGGAGTGTCATACAAAGATGTTTGTC
CGATCGAACCATTCATTCCAATCTATCTCATTGTCGGTGGATCATTCGGT
ATCGTCAAAATGCTCTCCATCATAATTCAGCGAATCACATATAACGGAGA
TATCTTTCAAAGCGATAAAAGCAACGAGGAGGAGCTTCCAATCGCATGGT
TGTTCGTTGACGGCGTATTAAACTTGTTTTTATTCACGTGGTTCGTGGCG
GGAAACATATGGGTGTATTCCAAATATAAACCAAATTACACGCCCCCGga
aaaagaaccaGAGAGCAATTCGTGGAATCACTTGAAAATGATTGGTTTGA
TATTCTTGAGCAAAGTTGGTTGCACATTAATGCTGATGATGTTGTTGGCT
TTACCAATGTCTATGGTCGTTATTGGAGTGTCATACAAAGATGTTTGTCC
GATCGAACCATTCATTCCAATCTATCTCATTGTCGGTGGATCATTCGGTA
TCGTCAAAATGCTCTCCATCATAATTCAGCGAATCACATATAACGGAGAT
ATCTTTCAAAGCGATAAAAGCAACGAGGAGGAGCTTCCAATCGCATGGTT
GTTCGTTGACGGCGTATTAAACTTGTTTTTATTCACGTGGTTCGTGGCGG
GAAACATATGGGTGTATTCCAAATATAAACCAAATTACACGCCCCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053505-exon-scaffold_232-1491911889:100378..100444 | TCONS_00053505-exon-scaffold_232-1491911889:100378..100444 | Clytia hemisphaerica | exon |
| TCONS_00053505-exon-scaffold_232-1510915933:100378..100444 | TCONS_00053505-exon-scaffold_232-1510915933:100378..100444 | Clytia hemisphaerica | exon |
| TCONS_00053505-exon-scaffold_232-1575043694:100378..100444 | TCONS_00053505-exon-scaffold_232-1575043694:100378..100444 | Clytia hemisphaerica | exon |
| TCONS_00053505-exon-scaffold_232-1491911889:106280..106339 | TCONS_00053505-exon-scaffold_232-1491911889:106280..106339 | Clytia hemisphaerica | exon |
| TCONS_00053505-exon-scaffold_232-1510915933:106280..106339 | TCONS_00053505-exon-scaffold_232-1510915933:106280..106339 | Clytia hemisphaerica | exon |
| TCONS_00053505-exon-scaffold_232-1575043694:106280..106339 | TCONS_00053505-exon-scaffold_232-1575043694:106280..106339 | Clytia hemisphaerica | exon |
| TCONS_00053505-exon-scaffold_232-1491911889:106792..107063 | TCONS_00053505-exon-scaffold_232-1491911889:106792..107063 | Clytia hemisphaerica | exon |
| TCONS_00053505-exon-scaffold_232-1510915933:106792..107063 | TCONS_00053505-exon-scaffold_232-1510915933:106792..107063 | Clytia hemisphaerica | exon |
| TCONS_00053505-exon-scaffold_232-1575043694:106792..107063 | TCONS_00053505-exon-scaffold_232-1575043694:106792..107063 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_232 | supercontig | scaffold_232:100378..107063 + |
Blast
The following BLAST results are available for this feature:
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