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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053486 ID=TCONS_00053486|Name=TCONS_00053486|organism=Clytia hemisphaerica|type=transcript|length=1243bp
CGAGCACGTAGGCACGTTGGGCACGTAAGGCACGCGAGCACGaaggcacg
tagggcacgaaggcacgtcaaaaaaatgagggcacgtgggcacgtagggc
acgtcatttagcagactcatgaGAAGAATACATGTACACAATTATTTTGT
GGTGATTTTTATTATTATGCCAACACTTATATGTAAAAGCTTActattta
taattgatattcTATTATTtcagtttgatgttttgttttttgtgtgtttt
gtgCAACCTGACAGAATGTTTCCAGGCTCGTGATTTGGAGGTATAATTAA
TGTAATTCAATGGTAATTGGTAATTCATTAATGTTCTCCCAAAAAAGACA
GCCTTGACTATTCCTATTTTTTTTCGCCCCCGTTGAAGTAATTTAAAATC
ACAATCGGAAGGAACTTGCCTAacgagcacctcaccaaaaactgggattt
ttcatcccgtttattagtgagttccactttaatgattttcgaaaaataga
agcctttcaagcgctttgacgcaaattcgacaTTTTTGCTACTGCAACAG
CTccgaaagtttaaagtgacttaagaaaaatcgagaaaacaccgtgacgt
ctagtataagCTTGAACATGCCAAACATTTTCAATGGGTATGTACGGTTC
TTGCCGAAAAATGGGAAacgattaaaatcatttttccaaaaaatattttt
attaccaaTGTGAATTGGGACAAAGAAATTCTTCTTATTTTATCTACTCT
CTAAAACTCTAGtatgagttttgaggattttactctttattaaatttttt
ctgttttttttccgGACACGGTGTATGCTGACATgtcttaaaagttttta
atgatAAACTGCGGGGCCAGATTTTCACAGGCTAAAACATCCgacaaaaa
tttccatttttggCTTTATATGTATACTTTAAACGTCAGTAAAAATTTCG
CGATAGTTGCTGATGAtcctaaatttttcaaataaaatttattccaCACA
TGCGAGATTTATTAAAACTGACTAACGAAGTTGTCTGGTCGCGAATGTGT
CTGACATTAAGGTATTGtagttgaaatatttttgttattttttgatttga
tataAAAGGTTTTTGTAATTTATAGCATTCTTAAAGATTTTGTAAATACT
GGTTAGATTTTAGTCGATCTCCTTTTTTGTGGTTGctataaagaaataaa
aagttcttgttTTTTATCTTAAAGTTTTTAGCTTTTGTTTTAT Run BLAST on NCBI transcript from alignment at scaffold_231:278852..280094 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053486 ID=TCONS_00053486|Name=TCONS_00053486|organism=Clytia hemisphaerica|type=transcript|length=1243bp|location=Sequence derived from alignment at scaffold_231:278852..280094 (Clytia hemisphaerica)
ATAAAACAAAAGCTAAAAACTTTAAGATAAAAaacaagaactttttattt
ctttatagCAACCACAAAAAAGGAGATCGACTAAAATCTAACCAGTATTT
ACAAAATCTTTAAGAATGCTATAAATTACAAAAACCTTTtatatcaaatc
aaaaaataacaaaaatatttcaactaCAATACCTTAATGTCAGACACATT
CGCGACCAGACAACTTCGTTAGTCAGTTTTAATAAATCTCGCATGTGtgg
aataaattttatttgaaaaatttaggaTCATCAGCAACTATCGCGAAATT
TTTACTGACGTTTAAAGTATACATATAAAGccaaaaatggaaatttttgt
cGGATGTTTTAGCCTGTGAAAATCTGGCCCCGCAGTTTatcattaaaaac
ttttaagacATGTCAGCATACACCGTGTCcggaaaaaaaacagaaaaaat
ttaataaagagtaaaatcctcaaaactcataCTAGAGTTTTAGAGAGTAG
ATAAAATAAGAAGAATTTCTTTGTCCCAATTCACAttggtaataaaaata
ttttttggaaaaatgattttaatcgtTTCCCATTTTTCGGCAAGAACCGT
ACATACCCATTGAAAATGTTTGGCATGTTCAAGcttatactagacgtcac
ggtgttttctcgatttttcttaagtcactttaaactttcggAGCTGTTGC
AGTAGCAAAAAtgtcgaatttgcgtcaaagcgcttgaaaggcttctattt
ttcgaaaatcattaaagtggaactcactaataaacgggatgaaaaatccc
agtttttggtgaggtgctcgtTAGGCAAGTTCCTTCCGATTGTGATTTTA
AATTACTTCAACGGGGGCGAAAAAAAATAGGAATAGTCAAGGCTGTCTTT
TTTGGGAGAACATTAATGAATTACCAATTACCATTGAATTACATTAATTA
TACCTCCAAATCACGAGCCTGGAAACATTCTGTCAGGTTGcacaaaacac
acaaaaaacaaaacatcaaactgaAATAATAgaatatcaattataaatag
TAAGCTTTTACATATAAGTGTTGGCATAATAATAAAAATCACCACAAAAT
AATTGTGTACATGTATTCTTCtcatgagtctgctaaatgacgtgccctac
gtgcccacgtgccctcatttttttgacgtgccttcgtgccctacgtgcct
tCGTGCTCGCGTGCCTTACGTGCCCAACGTGCCTACGTGCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053486-exon-scaffold_231-1491911889:278852..280094 | TCONS_00053486-exon-scaffold_231-1491911889:278852..280094 | Clytia hemisphaerica | exon |
| TCONS_00053486-exon-scaffold_231-1510915933:278852..280094 | TCONS_00053486-exon-scaffold_231-1510915933:278852..280094 | Clytia hemisphaerica | exon |
| TCONS_00053486-exon-scaffold_231-1575043694:278852..280094 | TCONS_00053486-exon-scaffold_231-1575043694:278852..280094 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_231 | supercontig | scaffold_231:278852..280094 . |
Blast
The following BLAST results are available for this feature:
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