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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053484 ID=TCONS_00053484|Name=TCONS_00053484|organism=Clytia hemisphaerica|type=transcript|length=1056bp
GAGAACTTTGTCAGTGAGTTGAAAGCTCATCGAATTTTTAAAGTCATGAA
CAGAGCACAGGGAAATGAAACATTTTGCTACGACCTTCCCATTTCTGTTG
GTAATTCTACTTTGTGTGGTATAAAAGAGCTTTGGAAGACTCCATATGAA
GATATTACGCTTCAATTTAAAGTATATTCAATGATCGTTGGATATGGGGT
GATTCTTCTGCCCTTCTACGTCatcgttttctttcaaatgaaagGAGAAT
GGAGCAATAGATATAAAGAAAATAGGAGAAAAGAACGCCGAGAAAATATA
GAGCAATCTATGTTCATCGGTGTCAAATGGTATATCTATTGTTGCACTAT
CAAGAatgcaaaacttttgaaattcaagAGTTTCTCTGCAACAGTTCTCT
TGATGTtcttcaaaatcatttgggaCTATGTAGATTTTATTCTAGATATG
AAAATTCATTATCAGTATGAGACGGGTGGTTTGATTGATCCTGGTATCAC
TCGTCAACGGAATGTATCTGAGGCTATCTTCGGGTTCCCCCTCTATGGTT
GTGCTTTGAAAGTTGTCGCTTCCTTTGGGAAAATCGCTGCTTGGAGGGGA
ACACAAGTTCAACTGGATGCCATTAAGTTCGACTTATACGCTTTGAGCGT
TATAACTGAAGACGCACCCGAactatttttggaatatttttacATTGAGA
AATACATTACGTCATCAGCCAATTGGTGGATGATTCTGAAAGATGTGATC
ATTGCTGTGGTAACCTTGGTAACATGTTATACTGCGTTCAAAGCAGTCCG
CTCAAAAGCACAGGAAGAAAACGAAAGcacaaaatggaaaatttatGAAG
TTTTCCTGGCAACGACAGTTTTCATCTTTAGTATTGCTTCATTTTTACGG
ATTGGGGGAGCATGTTATCAGTATGTGACACaaaagatgagacgagattg
tTTCAATGTAGAAAAGGGACGAATTATTCAAACACCGTTCACATTTGGCT
GCATGCGTGGTATTGATTACGTCATCTTTTTGTTCAGTGGTTTATCACTG
TTGGGG Run BLAST on NCBI protein sequence of TCONS_00053484-protein >TCONS_00053484-protein ID=TCONS_00053484-protein|Name=TCONS_00053484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
ENFVSELKAHRIFKVMNRAQGNETFCYDLPISVGNSTLCGIKELWKTPYE
DITLQFKVYSMIVGYGVILLPFYVIVFFQMKGEWSNRYKENRRKERRENI
EQSMFIGVKWYIYCCTIKNAKLLKFKSFSATVLLMFFKIIWDYVDFILDM
KIHYQYETGGLIDPGITRQRNVSEAIFGFPLYGCALKVVASFGKIAAWRG
TQVQLDAIKFDLYALSVITEDAPELFLEYFYIEKYITSSANWWMILKDVI
IAVVTLVTCYTAFKAVRSKAQEENESTKWKIYEVFLATTVFIFSIASFLR
IGGACYQYVTQKMRRDCFNVEKGRIIQTPFTFGCMRGIDYVIFLFSGLSL
LG Run BLAST on NCBI transcript from alignment at scaffold_231:114455..115510 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053484 ID=TCONS_00053484|Name=TCONS_00053484|organism=Clytia hemisphaerica|type=transcript|length=1056bp|location=Sequence derived from alignment at scaffold_231:114455..115510 (Clytia hemisphaerica)
CCCCAACAGTGATAAACCACTGAACAAAAAGATGACGTAATCAATACCAC
GCATGCAGCCAAATGTGAACGGTGTTTGAATAATTCGTCCCTTTTCTACA
TTGAAacaatctcgtctcatcttttGTGTCACATACTGATAACATGCTCC
CCCAATCCGTAAAAATGAAGCAATACTAAAGATGAAAACTGTCGTTGCCA
GGAAAACTTCataaattttccattttgtgCTTTCGTTTTCTTCCTGTGCT
TTTGAGCGGACTGCTTTGAACGCAGTATAACATGTTACCAAGGTTACCAC
AGCAATGATCACATCTTTCAGAATCATCCACCAATTGGCTGATGACGTAA
TGTATTTCTCAATgtaaaaatattccaaaaatagtTCGGGTGCGTCTTCA
GTTATAACGCTCAAAGCGTATAAGTCGAACTTAATGGCATCCAGTTGAAC
TTGTGTTCCCCTCCAAGCAGCGATTTTCCCAAAGGAAGCGACAACTTTCA
AAGCACAACCATAGAGGGGGAACCCGAAGATAGCCTCAGATACATTCCGT
TGACGAGTGATACCAGGATCAATCAAACCACCCGTCTCATACTGATAATG
AATTTTCATATCTAGAATAAAATCTACATAGtcccaaatgattttgaaga
ACATCAAGAGAACTGTTGCAGAGAAACTcttgaatttcaaaagttttgca
tTCTTGATAGTGCAACAATAGATATACCATTTGACACCGATGAACATAGA
TTGCTCTATATTTTCTCGGCGTTCTTTTCTCCTATTTTCTTTATATCTAT
TGCTCCATTCTCctttcatttgaaagaaaacgatGACGTAGAAGGGCAGA
AGAATCACCCCATATCCAACGATCATTGAATATACTTTAAATTGAAGCGT
AATATCTTCATATGGAGTCTTCCAAAGCTCTTTTATACCACACAAAGTAG
AATTACCAACAGAAATGGGAAGGTCGTAGCAAAATGTTTCATTTCCCTGT
GCTCTGTTCATGACTTTAAAAATTCGATGAGCTTTCAACTCACTGACAAA
GTTCTC Coding sequence (CDS) from alignment at scaffold_231:114455..115510 >TCONS_00053484 ID=TCONS_00053484|Name=TCONS_00053484|organism=Clytia hemisphaerica|type=CDS|length=1056bp|location=Sequence derived from alignment at scaffold_231:114455..115510 (Clytia hemisphaerica)
CCCCAACAGTGATAAACCACTGAACAAAAAGATGACGTAATCAATACCAC
GCATGCAGCCAAATGTGAACGGTGTTTGAATAATTCGTCCCTTTTCTACA
TTGAAacaatctcgtctcatcttttGTGTCACATACTGATAACATGCTCC
CCCAATCCGTAAAAATGAAGCAATACTAAAGATGAAAACTGTCGTTGCCA
GGAAAACTTCataaattttccattttgtgCTTTCGTTTTCTTCCTGTGCT
TTTGAGCGGACTGCTTTGAACGCAGTATAACATGTTACCAAGGTTACCAC
AGCAATGATCACATCTTTCAGAATCATCCACCAATTGGCTGATGACGTAA
TGTATTTCTCAATgtaaaaatattccaaaaatagtTCGGGTGCGTCTTCA
GTTATAACGCTCAAAGCGTATAAGTCGAACTTAATGGCATCCAGTTGAAC
TTGTGTTCCCCTCCAAGCAGCGATTTTCCCAAAGGAAGCGACAACTTTCA
AAGCACAACCATAGAGGGGGAACCCGAAGATAGCCTCAGATACATTCCGT
TGACGAGTGATACCAGGATCAATCAAACCACCCGTCTCATACTGATAATG
AATTTTCATATCTAGAATAAAATCTACATAGtcccaaatgattttgaaga
ACATCAAGAGAACTGTTGCAGAGAAACTcttgaatttcaaaagttttgca
tTCTTGATAGTGCAACAATAGATATACCATTTGACACCGATGAACATAGA
TTGCTCTATATTTTCTCGGCGTTCTTTTCTCCTATTTTCTTTATATCTAT
TGCTCCATTCTCctttcatttgaaagaaaacgatGACGTAGAAGGGCAGA
AGAATCACCCCATATCCAACGATCATTGAATATACTTTAAATTGAAGCGT
AATATCTTCATATGGAGTCTTCCAAAGCTCTTTTATACCACACAAAGTAG
AATTACCAACAGAAATGGGAAGGTCGTAGCAAAATGTTTCATTTCCCTGT
GCTCTGTTCATGACTTTAAAAATTCGATGAGCTTTCAACTCACTGACAAA
GTTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053484-exon-scaffold_231-1491911889:114455..115510 | TCONS_00053484-exon-scaffold_231-1491911889:114455..115510 | Clytia hemisphaerica | exon |
| TCONS_00053484-exon-scaffold_231-1510915933:114455..115510 | TCONS_00053484-exon-scaffold_231-1510915933:114455..115510 | Clytia hemisphaerica | exon |
| TCONS_00053484-exon-scaffold_231-1575043694:114455..115510 | TCONS_00053484-exon-scaffold_231-1575043694:114455..115510 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_231 | supercontig | scaffold_231:114455..115510 . |
Blast
The following BLAST results are available for this feature:
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