TCONS_00053453 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053453
Unique NameTCONS_00053453
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1745

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053453 ID=TCONS_00053453|Name=TCONS_00053453|organism=Clytia hemisphaerica|type=transcript|length=1745bp
Tgatgtatttttaaaattttaagaagaaggattttttacttcattttatt
tAACAGAAAGGCCAAGGAAAATAATTATAAGGTAAATCAAAGGTAAAACT
TTGCAATTAAAATCGTTAATGCTATTTCCCGCCATATCAACAAATCGTTT
CTTCCCTTGGTAAAAGACCTCCCAGCCCATATTTTTAGGCGTAGAATTTT
TCTATGATTTATTATTCTTGGCTAGAAGTAAACACAACGCGCGGGATTGA
GTAGAAATTTACTTTTATAACCACTGCACCAGACTGTCACTGTGAACCAC
CAACTTTTTTACATTCTCAAAGTTTCTTCATTGAAGAGATGAATTTCCAA
GgATTTGGTGATAACTATCAAggTGATGGAGGAAGTGGAGGTGGATTTAT
GAGCCCTGGGTTTGGTGGATCACAAACACCAGGTCCAGATGCTAAAaaat
caAGAGCTCAATCGCTTCTACCAGTAACTGCAGCAATCATTCAAAAAGCT
GACTATAATGCAACAGAAGATGTTTTTCGATTTGAAGGAGTCGAAATTCA
CCAAgtGACATTTGTTGGTATCATCAGAGAGGTCAGTGAAGCTGCAACCA
ATATTTCGTACAAAATTGATGACATGACTGGTGACTTTATATCAGTTCGA
AAATGGCTAGATGACGAGGAGAAGACCGCATTCAAGAGATCAGAGTGCCG
AGAAAATACATACGTTCGAGTGGTTGGAAATATGAAAGCACTATCTGAGG
GGAAATTAAGAAATGTTATGGCATTCAATATTACACCAGTTGTTGATTTC
GATGAAATTACATATCACTTTTTGGATGTTGTTCATGCTAAGCTAGCAAT
CGAAAAGATTGTTGGTGGCTCATCTACAGCACCGTTGGGTGGGGTACAAA
CCCCTGCTGGTGCAAATGCTGATAACTTTGGTGGTGGTTACAATGATGCA
GGCTTGACCGGTCAAAACAAATTGGTCTTCAATTACATTTCTGCGTGCAC
TGAAGAACAAGGAATCCACTTTCAGTCGTTGAAAAATAAATGTCGTGGAA
TGCAAGAAAAGCAGTTGAGgaATTGTATCGAATGGTTGAGTAACGAAGGA
CACATCTATTCAACGATAGACGATGATCACTATAGATCAACATCTAGTTA
AAAATGCTAGAGTATAATCAATACTtagttttgtttatttatgtTATCCA
CGTGGCAGTCACTGACAGCGGATTGCTGCATTTGCATAAACGTTCGGAAT
CTTGGTGTACTATCTGTGGAAAGAATTACAATATTCTCATCGGATTATCA
GAACAAAATCTTATACTACAGTATACCACggttgagaaaataaaaaaaga
accaACCAGAAGGGACACGTAAAAATGACAAAGTGATGAATGgtgaaaga
ttttattttgCATTTTGACGTTATGTTTGACTGAAGTGCATATCACTAGA
AAATGGGATGTTTTTAAATACTTAAAgtgataaaaatgtaaataatttAG
TAACTCAAATTGACTATAACATGATAAAATGAGTTCAACAAATCCTTTGT
TAAGTTATCGACTTTGTCCTCTCAGAGGGTATTCCAATAggtcttatcgg
agtttttgatttttctaaaaaagcgatgcattgtgggattgctTCGGGAG
Tattaccattgagtttaaagcccgaagggctagagttcaatctctaacct
ttctcaggcaagaaaaagtgaagtcttaaaaaatgcgccgcattt
Run BLAST on NCBI

protein sequence of Replication protein A

>TCONS_00053453-protein ID=TCONS_00053453-protein|Name=Replication protein A|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MNFQGFGDNYQGDGGSGGGFMSPGFGGSQTPGPDAKKSRAQSLLPVTAAI
IQKADYNATEDVFRFEGVEIHQVTFVGIIREVSEAATNISYKIDDMTGDF
ISVRKWLDDEEKTAFKRSECRENTYVRVVGNMKALSEGKLRNVMAFNITP
VVDFDEITYHFLDVVHAKLAIEKIVGGSSTAPLGGVQTPAGANADNFGGG
YNDAGLTGQNKLVFNYISACTEEQGIHFQSLKNKCRGMQEKQLRNCIEWL
SNEGHIYSTIDDDHYRSTSS
Run BLAST on NCBI

transcript from alignment at scaffold_231:128988..145917-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053453 ID=TCONS_00053453|Name=TCONS_00053453|organism=Clytia hemisphaerica|type=transcript|length=16930bp|location=Sequence derived from alignment at scaffold_231:128988..145917- (Clytia hemisphaerica)
TGATGTATTTTTAAAATTTTAAGAAGAAGGATTTTTTACTTCATTTTATT
TAACAGAAAGGCCAAGGAAAATAATTATAAGGTAAATCAAAGGTAAAACT
TTGCAATTAAAATCGTTAATGCTATTTCCCGCCATATCAACAAATCGTTT
CTTCCCTTGGTAAAAGACCTCCCAGCCCATATTTTTAGGCGTAGAATTTT
TCTATGATTTATTATTCTTGGCTAGAAGTAAACACAACGCGCGGGATTGA
GTAGAAATTTACTTTTATAACCACTGCACCAGACTGTCACTGTGAACCAC
CAACTTTTTTACATTCTCAAAGTTTCTTCATTGAAGAGATGAATTTCCAA
GGTAACTTCTTATCTTATTATTATTTTTTAAATCTAATTTAGTACTTTGC
AAATAAATTGTATCAATATAAAAGGCGTTACAGGACCCTGCCGACGCACC
AGACTTAACGAACACCGCACATGCGAAAGTCTGGTGTAAAATGAGATTTT
TTTTACCACCGGAAATCTTTACACCAGACTTAAGGAAGTCGGATGTCCGG
TGACGGAGAAGGATATTTTTTTCCGCCGGACAATCAAAACACCGGACATG
ACCAGTCGGGTGCGTTTGGTGTTTCTTAATTTTTTGTTTCATAAATGTCC
CGCGTCCAAAATTCCCTGTATGCAACACTGGACTGACACCGGACTTATTG
CGTCCGGTGTAGTGAAAGGATACTTTTGCCACCGGACAAATACACCGGAC
AGTCCGGTGCGTCGGCAGGGTCCTGGCGTTACGCGTGTTGGGGGTCTTCG
ACAAAAAACTTTCGAATTTTTTATCGGCATTGGGCCGATAAGCTCCAGAC
CCCCTCCCCTCCTTGCTCTTATCGGCCAAAATTTTTGAAACCAACTTTTA
CATCTTCGAAAACACAATTTTTTCCAATCATTACCGCCATCGCGTTGATC
TCNCTTGCTGACTCTCGAGAGATTTTTGTTTAACATTGGAGCTTGATCAT
CATCAATTAGAATAATGCCGATTTATATTTGTACGATAAAGTTATAACAA
AAGCATGATTGATGACTTTAGCCCAAAAGACAACTTAAATGATAAAAGTA
CCTATGGTATATGTTACTTTTGATGCTAGCTCGAATATATTTTCAAACAA
GATATCTTTCACAAAAAAGTGTTTTTTACTGGCAAATCAACTTATATTTT
CATAGACGATCTCAATCGAACGGAATCGACGATCGAACCAGTTGAATCAA
ATCGAATGCAATCGACCGATTGAAATTCGAATGTCGAACGCAATCGAATC
TCAATCGAATATTACCGCCATTCGATTGCGTTCGACAATCGAATTTCAAT
CGGTCGATTGCATTCGATTTGATTCAACTGGTTCGATCGTCGATTCCGTT
CGATTGAGATCGTCTGGTCATAAACTCTTTGACGTGAGATTGTAGATAAC
GCTTGTTATTATATTACCGCCTAATAAATAGTAATGGCATTACTTTATGT
ACTTATATGAATTATAGAAGTTTTTGAATTTTATTCTGCAAGGCAAGGTT
CTAGAAAAAATTAGTTTGGACTGGTTTGGATTGATTTTATAAATGAAACA
TTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TGAGTTTTTGTCTATTTGCACCAACATTGAGTTTGTTCATACCCGCATTG
ATATTGTTAATCAAAACAAAAGTTAAAAAGACGCGATGAATAAGTCGCAA
CATTTCGAAGGAAATGGCAGCACGCTGGCCTATGAAAAAAGAGTTTTTTT
ATCAAAGCTAATTCAAAACTGTACTTTTAAAGTTGCGAATTTGTGCGCGA
AGGTGAAAGCAAGTGAAATTGTATGCTTTCAGTGGAGTTTGTGGACAAAA
TCAGAAAGAAATTGGCTGAAAAGATTTTCGTCCCAATACTTGTTTTTTTA
TCGGTATGTAGTTGGACCCCCCCACCCCCTTATCGGCCCAATGCCGATAA
AAAATTCGAAAGTTTTTTGTTGAGGGTCCCTTGCTCTCTGTTTTTTCACC
AGCAGCGAATAAACACTTCGACCTCCTGACCTTAGCGGTGGCCGTATTGA
TGGCAAATGTATTCCTTCTAATCCACACAAATATTTCAAATATCGGTCAA
TGGACAAATTCAACAAAATATAGCACATTAATGAAAAAATCGCCTCTTTT
TAGCATATTTTTTATGTGTTTTTAGTCCTCCTTCAAACATCCCAATGCGC
ACCAAATTAAAAATCCCCACTTAATAATTTCAAGAAATTGATCAATCGCC
AAAAAATGAAAGTATTAAATCTAGGCCAAAATTAATCCACAGGTATTTTT
CAAAACAAAGCCAGCACAGAAAAAAAATACATGTAACTCAAAAAAAATAC
AGTGTAACAACAGTAATGAAGAAAAAAATTGCAAAGGTTAGGCTGGACTT
AAAAAATTGTTGGTTTGCCGTCACCCGACCGNATTGCAAAGGTTTGGCTG
GACTTAAAAAATTGTTGGTTTGCCGTCACCCGACCAACCCTACCTTAAAA
CCTGCCGACCCAAAAAATTTTATTGCCATTTTAGGCAATTACTTTTTTAT
TTTCTGGTTTACGGACATTATGAGGAAAAGTTTTGGACAGGAGGATGGAA
AAAAATAAAAATAAAATTGATGTTTTAAATTTTTTTTATTTTCTTTTTAA
AAATCAGAAATCGGAGGAAATAATAAAATAAAATTTTATGAAATTTGCTA
AGTATCTAAATAAGTCTCTCTTCAACAACTCTTCTTCTTAGCACATATGC
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTCCC
TGACATTAAGGGAAGGATCAAAGTATCTTTACATTGGCAGAATAGAGCAC
AGCTGTGTTAGATCATTTAACCCCCTCTCTCTTCTCTTCTTTTCTTTTGT
TTTCCTGTTTAAGTAAAGGTTTTTTTATTTCTTCCTTCTTTTTTGAAGGT
CGGAGGAGAAAAAGTAAATAAAAGTTTTTGAAATCTCCATTTTATTTATT
TTTTATTTTGGCAAAAATAACGTCGGCGGATCCGTAAACCAATAAATAAA
AAAGTATTTGCCTTAAAGAAGAAATGTTTTTTTCTTCAAAAACTTCAAAC
AATCAAATCAAAACTTGTATCTTGTCTGTCTCAAGCATAAGAATCGTGAA
TTCCCTGCTAGCGCTCTTCTGTTTTCCATTCAAAATTACCTAAATGTAAA
CAAACCCTTCCATGTACAAAAATTTCTTAAATCGTCAAAATAAAATAAAT
TTCCGACCGACCGACCCACCTCCAAAATAGACCTTTTTTCAAAGAGGACG
TCCTGTTGAATAATTATGTAGTCCAGCCATAAAAACAATGATAGAGCCAT
GCATAATTACTGTATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAGGTCTATCTAGGGTCCGG
TGACGGCAAACTAACAATTTTTCTAAGTCCAGCCTTATTTCCATTGAATT
CTATTTTGTTATATAATTCTGTATTAATGTTTAGTTAATATGTGACGTCT
CTTTGCACAATATAAACAAGAAATAAACTCTAAAATATGGACTAAAATTT
TAACACAAAACTTTATACCGTGAGATCGGGTTACTTGCATCAGTGGAGGC
TAACATGCATAGCCCTCAGATGAATGACCTGGCTGGTCATTCAAATACGA
AGTTAAATCAAAACAAAAATGGTAGAGTAGAGCTGCGAGTGGAGATGCGT
AGTTCATTTGTTTTTAAATTTTACTGCTTTGATTGGTCAGTCATTTGATG
GCTATGTAAGTTTCCCTCCACTGATGCAAGTTACCCGACTTCACGGTATA
AGAACAGATCGCTAAATTCCAGCTCCACTGAAGGACTTTTCAGAACAGAA
ACTTAATTTCCAGCTAACAGTTTAAATATCTGTGTGGACAGATCGACAAT
TTCCAGAGAATTTTCAGCTGCCACTCCAGGCAACCACATTCAGAAGGAAA
AGAACAGATCTCAAAGACTTTTTGACTTTTTTGAAATTCCCTCAGAACAG
ATATCGTGAAGCCGGGTAACTTGCATCAGTGGAGGGAAGCTTGCATAGCC
ATCAAATGACTGACCAATCAAAGCAGTAAAATTTAAAAACAAATGAACTA
CGCATCTCTGCTCGCAGCTCTACTCTACCATTTTTGTTTTGACTTAACTT
ATATTTTAATGACCAGCCAAGTTATTCATCTGAGCAGGGGGGGGGGGCAG
TGTACTAGAAGGTGGCATGTATGTGTACTACAAGGTATTTTTCAAAACTT
GACACCCACCCACCCCTGAAGTACACCATACTACATGGAAAAATACCAAA
ACCACCCCATACCCTCTATTTACTACCGGGTAGTACCTGGAAAAAACCAA
GACCACCCCATACCCCCCAATTACTACTGGGCACTACCTAGAAAAATCCG
GTAAATAAAGTTTGTTTTTTTTCGGAAAATCAGAAAATCAGGTAAACATT
TTACCAAAAATCGGGAAAACTTTTTTTCCGAAAATCAGGAAATCAGGAAA
TTGGGAAAACTTTTTTCCAAAAATCGGAAAAACAGAAAATTTTTTCTCAA
AAATGCAAAATGCGTGAGAAATCAAACTTTTCAAAATTACGCGAGACCAT
GTGGAAATGCATGAGTCTCACACCCAATGCGTGAGAGTTGGCACCAATGT
TGAATGTTTGAATTCAAATGTTCGAATGTTTACATTGACTCGATAAACCT
TCATTTCAGTGGGATCTAATAGGATTTCAATTCATTCCAAGAAGTTTGGA
AGAATGATCTTGAACAAACTTGGCTTGATTAATTTATAATAGAACAACTT
TACATTTCTATTTTAGCAGATAATTTCTGAACCTTTTTGTTTCCACACTT
TTTAAACTTCGATTTTGGACCCAACACCCCTATTTTGGTACACAGGTAGT
AAAAATCAAATTCGATTTTGGACCCAACACCCCAATTATAGTACACAGGT
AGTACATGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GGTCTTCTTATCGTATATTATAAAACACAGACAATCTGAAAATTTTATGA
ACAATTTTCATGTTTATAACCTCAATCCAAAGGGTAAGCATTAATTAATC
TCCTTTGTCTTTGAGTTCTGGTATGAAAGGTGTCTGTTTGCAGATTGGTC
TGGGATATGTTGACATCTTTCTTCTTCTTTTGTTTTGACTTCGGATAGTG
TTCACCTTTTCCTTGTTAATTGTACCAGTATAAATCACTGAAAGTTTATC
TATGTCTGCCAGGATTTATCAAAACTTTGTCTTTCCCTGGCTGGGACAAA
CCATAAAAAAACTGCAAACTGGCAGTTTTCCTTCCCCTCGACAGTTGCGC
ACTCTTCAACACAGAAGTTTCATTGCACTAGGTTTGTCAATCAGGTTACC
GTTACTTGATCATACAGAGACCTTTCCAGGATTTCTGCCAGAAAAAGTGT
CGTACTCTGTCTAAAGCTAAAACATCTTGAAAAATAAAGTGCCATACTGT
CAAATATCTCAACGGCCAAAGACTGGGCACAACAACAACAAATCTAAAAC
AAAAATATCTCTTTTGGCTCTTGTTTTATTCTAGAGCGCAGCATTGATCT
TGCATCTGATTGGCCATAAATAATCAATTATATTTCACGCGCAAAGTACT
AAAAAAATGGACAAATTTGAATGTGGAAAGTCTATACATTTTCTTGTTTT
TGGGTTTAGACAATGGAGGCACGCTTCGCTCGTAAACTTTCACTTTGGAA
ACCAGTGCGATTATTACACCATTATAACTTGGTCTTCATCTCCTATATCT
AATTCTGTTACTTGTCCTTTGGAGATAGGTATAATAAAGAGGTATCCTTG
CACATCCTTTTAGTAGTCGTTTGGTGAGAGAATGCAACAACCTACCAGTA
GAGTAGAGCGGAGCTGCTTAGTCCATTTGTTTTGAAATTTTGCTGCTTTG
ATAGATGTTTTGGCCCCATAGTGCGGAAGGGGGTCTGATCCCCCTTGTTA
AATGATCCCCCCTTCTTGGCATCCCCCAACCTTTAAAAATGCCTATCCCC
CAAGGGCTTTGTGCTAAATTTTCGAAAATATATAGTGTATAGTGCGATTC
AATAATCCCTTTCTTGCTGCTCCTTCCTTCTAAAAATCAATCCCCTTGTT
TTCTCTCTCTATTTGTTTATGATAAAGAGGGAAGGGAAACAGTAAAGAAA
AATTAACAGTGCTAGGGAGGTCACCCGTTGGGATTTTTGGCGCGGAACAA
GGAAGAATTCACCAAAATGAACTTCAACGCATTATACCGTCAACTGCTTT
AACTTGGGACTATCTGACAAAACATGGGACGGCAATTCGGCCACCATTTC
ACCAAACCTTCAAAGTCATTTGATTTGAGTTAATGAACGGCGTATTAAAA
AATACACGATTTCTCTTTCGCACTGAGTAGGCTTTTAAATCGAAATATAA
AAAAATTCAAATCGTTTAATTCTTTTTTTAAATCAATCAGAAATCAGGGA
AACAAATAAACTAAATCTAAATATCTCTTTTCTTTCCAAAGATATCAATG
TTTTTCTACGTCAAGGTTAATACACGTTTTTTTTTTTAAGAAACACACTT
TTAAGAAACATGAGGCTCAGAATGCCTAAAAACTAAGAAACATCTAAGAA
ACATGCTGAGGCTGAGAATGAGAAAGTAACATTTTTTACTTCGTTTCTTT
TAAGAACCTTCAAATCAAAACAAATGTGTTATTTTCTTTGCATGAAAAAA
AGGCTGATTATGTCAAAAAGTTTAGAAACATGTAAGAAACAATAAAGGCT
CAAAAGGCCGATTTCTTAAGAAACATTGAGGCTGCTTGGTAAAACTAGTT
TCTTAAAAAAAAAAAACGTGTATACTAGTTACATGAAAAATGGCGAAAAA
TGTAGATTTTCAAATAAACTAGCATGTGATAGATATTGTAGCCTAAATCG
TACCCTGGGTTTACTAAAAAACACAATTGAAAAGATGAGCCAGTTCATTA
ACGACAGCCATTTGTTTCCATGTGGGTCAAGAATTTTCTGGTGCTGTAAG
TCAGCGCTAAGTTAATCAGCCTTATGAAAGACTGAATTGGAAGGTTCTTA
AAAAAACCGAATTAAAAAATGTTATTTTCTCATTCTCAGCCTCAGCATGT
TTCTTAGATGTTTCTTAGTTTTTAGGCATTCTGAGCCTCATGTTTCTTAA
AAGTGTGTTTCTTAAAAAAAAAAAAGTATACACCATCTGAAAGGTAACCA
AGAATGTGATAGTGGGCGTACATAAAAAATAATTGCTGGCTTGAGAATTC
AAAAAAATACCTTTTTTGCAAAATTTTATTTGAAAGTCCTTTGTGAGAAA
AATAAGGGGTCATTTATTAAATTTGTTAAGTATTTCCAAAGTTATTCCAT
ATTCAAAACACAAAAAATCGCCTTTCCAAAGAATCGTCTGCTCACCCTGT
ACCAGCAAGAAATAATTTTTCGAAAGCAGCACCAAAAATGGCAGATGAAA
TCTAGCTTTCCACGTGACGGGCGTGCAGAGTTTTGCTGACACAGTTTGAA
AATCAGCCCAATGACTGTTAAACTTTGGCTTATTGCTAATGAGCTGGAAA
TGATAGCTGAAAACAAATTTTAGCACTACAAAACCTCAGCTTTCAGTTGG
TGTATGCTGCTTACATGAAAAAATCCGCAATCTTGTCAAAAATCACAATT
TCTTCTATTTTTTGAAATTCCAGACAGCCTGTAGATTTTCAAAAATAGCA
GCATGTGATAGATTGTAGCCTAATCTTACCCTGGGTTTACTAAAAAAACT
GCGAAAAGTTGAACCAGCTTCATTAGCGACAGCCATTTGTTTCAAATGCA
GGTCAAGAATTTTCTGCTGCCATAAGTCAGCGCTAAGTCTTGTTTTCACC
TTGACGTCGAAAAACATCAATGTTTGTTTGTCCCTCAGTCAGTCTGTTTG
TCCGTCTGTCCATCCATCCATCCGTCTGTTCGTCTGTTACCAGCTTTTCT
CGGGATTTGCTCATTAGTTTTTTCTGATTTTTTGCACAGTGATGCAAAAT
GGTGATTCCCAAAAAGTGATGGACCCTGATTTTCAAAAAAAAAATTTGGG
CCAAAAAGTGCCTAAAAATGGGGTTTTTTGGACTTTTTGCGAAATTGGTT
CATTAGTTTTTTCTGATTTTATGCATAAAAATGGCAAGGTTCTCTAAAAA
GTGGCTGAATCAGTTTTTATTTAGTATAGTTTGTTTTATCTATAAAACAT
CTGCCACTATGCAACTTTGCGTTGAGTTAGAATGAGAGAAACTTGTTTTG
ATTTTCAGAGTCCAATGTGCTCAGCACCATTTTTAGTATCTGTGCAAATA
AAATTATCTCATTTGTACTGATTGTCAGCTGGGGTGGGGAAGGGGGTGGT
TCCCCCATTTTCAGAAAATCAGGGTTTCCCAGGCTGGTATCAATACAAAT
TTAGGGGGTGGGTCCCTTTTTTAGAAAATTGGGATTTTCCATGTTGGTAT
TGGTACCAATTTAGGGGAGGTCGCCCTTTTTTAAGATGATTGGGATATTC
AAGTTGGTATCAATATCAAAATAGGGGGTGGTGTCTTCTACTTTCAAATC
TCAAAAAATCAGGTTTTCGGGTCATGAGCTGGTATCCTGGACCCTGACCC
CCCCTGAGGGGAATTTTGTTTTGTCCTTTTAAAAAATTCAACAAAAAACC
TTATCAAGTCCCCATGCATAAAAATTCTGAATTAACAAATAAAAGTAAGG
TTCGGCTGGGAACATTTACAATATTTGTTACTAAGAGATTTTAAAGAGTC
ATTTTGTTATTTTTTTAGGATTTGGTGATAACTATCAAGTAAGTTTTTAG
TCTTAAATTGATAAAAGTTGTAGCAGACAAAACTAAAATTATCAACCCTG
TGAAGATTTTTGTTTAATATGATAAGGGATTGGTCAAGCTTTATCATTCA
GCTTGTCTGTTTTTAGGGAGTGTACTGAAATGTCTTTTTTTTATGCATTC
CAATATTCCCTTGACAGATTTTTCATTTCTCATAATAAAGATTTTGGATT
GTGCAATTATTGAGGTAAAATTAATTTTTTCTTTTAAAGGGTGATGGAGG
AAGTGGAGGTGGATTTATGAGCCCTGGGTTTGGTGGATCACAAACACCAG
GTCCAGATGCTAAAGTAAGCGATAAGTTAAATTGTTTATTTAAAAACCTG
TTGACAACTTTTAGTTAATATATTTGAATACTCTTATAAAGGCAAATTGG
CCGGACAGGAATTAATTGGCACATTCGTGAGAGCTGGCCTGATAGCTGCG
GCACTGCAGTACACACAACTATATATTTTTGTTACTTTCTGGATAGTGAA
GTTTGGAGTTTGGCATTCATTTGACCTTACCTCGTTTACCAATATTTGTC
CATTTCTATCGATGATCAAAATAAAAAAATGGAAAGTTTGATTTTTACAG
AAATCAAGAGCTCAATCGCTTCTACCAGTAACTGCAGCAATCATTCAAAA
AGCTGACTATAATGCAACAGAAGATGTTTTTCGATTTGAAGGAGTCGAAA
TTCACCAAGTAAGTTTGATACTTAGATTGTATTTGTGTTTGTTAGGTTTT
TATCCTCTCTCTAAGATGTATAGTCAATGTTCCAGTACTCTAAATGGTCC
AAAGTTTACCAACTTTCAAGTTCCAAAGATTCATATACTTGCAGTTTAAA
AGTAAAATTGGAACAGAGTTTGAAAAGTATAATGGTTTGGAATGAAAAGC
TACTTTTGATTTTTTTCTAGGTGACATTTGTTGGTATCATCAGAGAGGTC
AGTGAAGCTGCAACCAATATTTCGTACAAAATTGATGACATGACTGGTGA
CTTTATATCAGTTCGAAAATGGCTAGATGACGAGGTATGTACAAATATCT
CGTGCTCGTCTCCCTTCAACTTTCTATGTCCTAAGCATATTCTCTCATAG
GAGGAGATAGCCCAAAGTTCTGTCAAAATTTATGAAAGCAGTTCTAGGTT
CTCTTAGATTTTCACATTGAACTTGTCTTCCATAAAGCTCCGCTTAATAA
ACTAAACCTTCACTAAAACTTATCTTTATCTAGTCTTTATTTAAAATTAA
AATCTCACTACTGGTTTTTTATAATAAAAAAGGTTAAGACAATTTCCCAT
TTGTGCCTGCTTGGGCAAATGTAATTTATAACTTTCTTAAATTACTAGGA
GAAGACCGCATTCAAGAGATCAGAGTGCCGAGAAAATACATACGTTCGAG
TGGTTGGAAATATGAAAGCACTATCTGAGGGGAAATTAAGAAATGTTATG
GCATTCAATATTACACCAGTTGTTGATTTCGATGAAATTACATATCACTT
TTTGGATGTTGTTCATGCTAAGCTAGCAATCGAAAAGGTAATTTTCATCG
GTTGGAACGGGTGCTCCGATTTTTATTGATTCTTCCTTCTTGATATCACT
CTCTTCCATGAATATGACTTCCCCTAAGTGTGTACTTACCTTTTGTTACG
TGGCCATTTTGAATTATGGTTGGGCTAATCTAGAGGGGGGGGCGGAAGGT
ACTTCAACCCTTCTTTACTCTATGACGTAGGACGGTGGGGGCTCAAAATG
CTGGAATTTAAGTACTACTCTAACATTAACTTAAAAATAAGAAACAGACA
AATTTCTTATTTACGGTTAGGGTAAAAAGGAACTGATTATGCCTTAGCTG
TTTTGCTGTCTTCTATAAAATGACTCATTGAAAAAAGGAAGCTTCGCAAG
GGCCTTTCGTTGAATTTTAGAATTTAGAACACAACCATAGTTGATATGAG
TTTTCCTACAATAAAATATATTTCATCATCCTATGGTGAATTGAATAATA
GTCATTCTGGTATCGCTGTCTTAGATTGTTGGTGGCTCATCTACAGCACC
GTTGGGTGGGGTACAAACCCCTGCTGGTGCAAATGCTGATAACTTTGGTG
GTGGTTACAATGATGCAGGCTTGACCGGTCAAAACAAATTGGTCTTCAAT
TACATTTCTGCGTGCACTGAAGAACAAGGAATCCACTTTCAGTCGTTGAA
AAATAAATGTCGTGGAATGCAAGAAAAGCAGTTGAGGTATGTACGATGTT
GGATGACTTTCCCTCTAACACATGACTATGAAATTATTAGTTTTCTTATG
AGAGTCATAAATTTATAGATAGTAGTGAGATCAATAAACCTTCTGAAATT
TCATTTGAATCGTCACTCAGATCAGTTTTCACAATAAGTATTTTTGTCAA
GGAAATGATTTATACCAAAACTAACTTTATTTTCAAAAGTTATTTTAACT
TTCCCTGACCCAAATTCTCAGTAAAATATTTGAGACAATTTTCTTTCTTT
TCAGGAATTGTATCGAATGGTTGAGTAACGAAGGACACATCTATTCAACG
ATAGACGATGATCACTATAGATCAACATCTAGTTAAAAATGCTAGAGTAT
AATCAATACTTAGTTTTGTTTATTTATGTTATCCACGTGGCAGTCACTGA
CAGCGGATTGCTGCATTTGCATAAACGTTCGGAATCTTGGTGTACTATCT
GTGGAAAGAATTACAATATTCTCATCGGATTATCAGAACAAAATCTTATA
CTACAGTATACCACGGTTGAGAAAATAAAAAAAGAACCAACCAGAAGGGA
CACGTAAAAATGACAAAGTGATGAATGGTGAAAGATTTTATTTTGCATTT
TGACGTTATGTTTGACTGAAGTGCATATCACTAGAAAATGGGATGTTTTT
AAATACTTAAAGTGATAAAAATGTAAATAATTTAGTAACTCAAATTGACT
ATAACATGATAAAATGAGTTCAACAAATCCTTTGTTAAGTTATCGACTTT
GTCCTCTCAGAGGGTATTCCAATAGGTCTTATCGGAGTTTTTGATTTTTC
TAAAAAAGCGATGCATTGTGGGATTGCTTCGGGAGTATTACCATTGAGTT
TAAAGCCCGAAGGGCTAGAGTTCAATCTCTAACCTTTCTCAGGCAAGAAA
AAGTGAAGTCTTAAAAAATGCGCCGCATTT

Coding sequence (CDS) from alignment at scaffold_231:128988..145917-

>TCONS_00053453 ID=TCONS_00053453|Name=TCONS_00053453|organism=Clytia hemisphaerica|type=CDS|length=6504bp|location=Sequence derived from alignment at scaffold_231:128988..145917- (Clytia hemisphaerica)
GAATTGTATCGAATGGTTGAGTAACGAAGGACACATCTATTCAACGATAG
ACGATGATCACTATAGATCAACATCTAGTTAAATTGTTGGTGGCTCATCT
ACAGCACCGTTGGGTGGGGTACAAACCCCTGCTGGTGCAAATGCTGATAA
CTTTGGTGGTGGTTACAATGATGCAGGCTTGACCGGTCAAAACAAATTGG
TCTTCAATTACATTTCTGCGTGCACTGAAGAACAAGGAATCCACTTTCAG
TCGTTGAAAAATAAATGTCGTGGAATGCAAGAAAAGCAGTTGAGGAGAAG
ACCGCATTCAAGAGATCAGAGTGCCGAGAAAATACATACGTTCGAGTGGT
TGGAAATATGAAAGCACTATCTGAGGGGAAATTAAGAAATGTTATGGCAT
TCAATATTACACCAGTTGTTGATTTCGATGAAATTACATATCACTTTTTG
GATGTTGTTCATGCTAAGCTAGCAATCGAAAAGGTGACATTTGTTGGTAT
CATCAGAGAGGTCAGTGAAGCTGCAACCAATATTTCGTACAAAATTGATG
ACATGACTGGTGACTTTATATCAGTTCGAAAATGGCTAGATGACGAGAAA
TCAAGAGCTCAATCGCTTCTACCAGTAACTGCAGCAATCATTCAAAAAGC
TGACTATAATGCAACAGAAGATGTTTTTCGATTTGAAGGAGTCGAAATTC
ACCAAGGTGATGGAGGAAGTGGAGGTGGATTTATGAGCCCTGGGTTTGGT
GGATCACAAACACCAGGTCCAGATGCTAAAGATTTGGTGATAACTATCAA
ATGAATTTCCAAGGAATTGTATCGAATGGTTGAGTAACGAAGGACACATC
TATTCAACGATAGACGATGATCACTATAGATCAACATCTAGTTAAATTGT
TGGTGGCTCATCTACAGCACCGTTGGGTGGGGTACAAACCCCTGCTGGTG
CAAATGCTGATAACTTTGGTGGTGGTTACAATGATGCAGGCTTGACCGGT
CAAAACAAATTGGTCTTCAATTACATTTCTGCGTGCACTGAAGAACAAGG
AATCCACTTTCAGTCGTTGAAAAATAAATGTCGTGGAATGCAAGAAAAGC
AGTTGAGGAGAAGACCGCATTCAAGAGATCAGAGTGCCGAGAAAATACAT
ACGTTCGAGTGGTTGGAAATATGAAAGCACTATCTGAGGGGAAATTAAGA
AATGTTATGGCATTCAATATTACACCAGTTGTTGATTTCGATGAAATTAC
ATATCACTTTTTGGATGTTGTTCATGCTAAGCTAGCAATCGAAAAGGTGA
CATTTGTTGGTATCATCAGAGAGGTCAGTGAAGCTGCAACCAATATTTCG
TACAAAATTGATGACATGACTGGTGACTTTATATCAGTTCGAAAATGGCT
AGATGACGAGAAATCAAGAGCTCAATCGCTTCTACCAGTAACTGCAGCAA
TCATTCAAAAAGCTGACTATAATGCAACAGAAGATGTTTTTCGATTTGAA
GGAGTCGAAATTCACCAAGGTGATGGAGGAAGTGGAGGTGGATTTATGAG
CCCTGGGTTTGGTGGATCACAAACACCAGGTCCAGATGCTAAAGATTTGG
TGATAACTATCAAATGAATTTCCAAGGAATTGTATCGAATGGTTGAGTAA
CGAAGGACACATCTATTCAACGATAGACGATGATCACTATAGATCAACAT
CTAGTTAAATTGTTGGTGGCTCATCTACAGCACCGTTGGGTGGGGTACAA
ACCCCTGCTGGTGCAAATGCTGATAACTTTGGTGGTGGTTACAATGATGC
AGGCTTGACCGGTCAAAACAAATTGGTCTTCAATTACATTTCTGCGTGCA
CTGAAGAACAAGGAATCCACTTTCAGTCGTTGAAAAATAAATGTCGTGGA
ATGCAAGAAAAGCAGTTGAGGAGAAGACCGCATTCAAGAGATCAGAGTGC
CGAGAAAATACATACGTTCGAGTGGTTGGAAATATGAAAGCACTATCTGA
GGGGAAATTAAGAAATGTTATGGCATTCAATATTACACCAGTTGTTGATT
TCGATGAAATTACATATCACTTTTTGGATGTTGTTCATGCTAAGCTAGCA
ATCGAAAAGGTGACATTTGTTGGTATCATCAGAGAGGTCAGTGAAGCTGC
AACCAATATTTCGTACAAAATTGATGACATGACTGGTGACTTTATATCAG
TTCGAAAATGGCTAGATGACGAGAAATCAAGAGCTCAATCGCTTCTACCA
GTAACTGCAGCAATCATTCAAAAAGCTGACTATAATGCAACAGAAGATGT
TTTTCGATTTGAAGGAGTCGAAATTCACCAAGGTGATGGAGGAAGTGGAG
GTGGATTTATGAGCCCTGGGTTTGGTGGATCACAAACACCAGGTCCAGAT
GCTAAAGATTTGGTGATAACTATCAAATGAATTTCCAAGGAATTGTATCG
AATGGTTGAGTAACGAAGGACACATCTATTCAACGATAGACGATGATCAC
TATAGATCAACATCTAGTTAAATTGTTGGTGGCTCATCTACAGCACCGTT
GGGTGGGGTACAAACCCCTGCTGGTGCAAATGCTGATAACTTTGGTGGTG
GTTACAATGATGCAGGCTTGACCGGTCAAAACAAATTGGTCTTCAATTAC
ATTTCTGCGTGCACTGAAGAACAAGGAATCCACTTTCAGTCGTTGAAAAA
TAAATGTCGTGGAATGCAAGAAAAGCAGTTGAGGAGAAGACCGCATTCAA
GAGATCAGAGTGCCGAGAAAATACATACGTTCGAGTGGTTGGAAATATGA
AAGCACTATCTGAGGGGAAATTAAGAAATGTTATGGCATTCAATATTACA
CCAGTTGTTGATTTCGATGAAATTACATATCACTTTTTGGATGTTGTTCA
TGCTAAGCTAGCAATCGAAAAGGTGACATTTGTTGGTATCATCAGAGAGG
TCAGTGAAGCTGCAACCAATATTTCGTACAAAATTGATGACATGACTGGT
GACTTTATATCAGTTCGAAAATGGCTAGATGACGAGAAATCAAGAGCTCA
ATCGCTTCTACCAGTAACTGCAGCAATCATTCAAAAAGCTGACTATAATG
CAACAGAAGATGTTTTTCGATTTGAAGGAGTCGAAATTCACCAAGGTGAT
GGAGGAAGTGGAGGTGGATTTATGAGCCCTGGGTTTGGTGGATCACAAAC
ACCAGGTCCAGATGCTAAAGATTTGGTGATAACTATCAAATGAATTTCCA
AGGAATTGTATCGAATGGTTGAGTAACGAAGGACACATCTATTCAACGAT
AGACGATGATCACTATAGATCAACATCTAGTTAAATTGTTGGTGGCTCAT
CTACAGCACCGTTGGGTGGGGTACAAACCCCTGCTGGTGCAAATGCTGAT
AACTTTGGTGGTGGTTACAATGATGCAGGCTTGACCGGTCAAAACAAATT
GGTCTTCAATTACATTTCTGCGTGCACTGAAGAACAAGGAATCCACTTTC
AGTCGTTGAAAAATAAATGTCGTGGAATGCAAGAAAAGCAGTTGAGGAGA
AGACCGCATTCAAGAGATCAGAGTGCCGAGAAAATACATACGTTCGAGTG
GTTGGAAATATGAAAGCACTATCTGAGGGGAAATTAAGAAATGTTATGGC
ATTCAATATTACACCAGTTGTTGATTTCGATGAAATTACATATCACTTTT
TGGATGTTGTTCATGCTAAGCTAGCAATCGAAAAGGTGACATTTGTTGGT
ATCATCAGAGAGGTCAGTGAAGCTGCAACCAATATTTCGTACAAAATTGA
TGACATGACTGGTGACTTTATATCAGTTCGAAAATGGCTAGATGACGAGA
AATCAAGAGCTCAATCGCTTCTACCAGTAACTGCAGCAATCATTCAAAAA
GCTGACTATAATGCAACAGAAGATGTTTTTCGATTTGAAGGAGTCGAAAT
TCACCAAGGTGATGGAGGAAGTGGAGGTGGATTTATGAGCCCTGGGTTTG
GTGGATCACAAACACCAGGTCCAGATGCTAAAGATTTGGTGATAACTATC
AAATGAATTTCCAAGGAATTGTATCGAATGGTTGAGTAACGAAGGACACA
TCTATTCAACGATAGACGATGATCACTATAGATCAACATCTAGTTAAATT
GTTGGTGGCTCATCTACAGCACCGTTGGGTGGGGTACAAACCCCTGCTGG
TGCAAATGCTGATAACTTTGGTGGTGGTTACAATGATGCAGGCTTGACCG
GTCAAAACAAATTGGTCTTCAATTACATTTCTGCGTGCACTGAAGAACAA
GGAATCCACTTTCAGTCGTTGAAAAATAAATGTCGTGGAATGCAAGAAAA
GCAGTTGAGGAGAAGACCGCATTCAAGAGATCAGAGTGCCGAGAAAATAC
ATACGTTCGAGTGGTTGGAAATATGAAAGCACTATCTGAGGGGAAATTAA
GAAATGTTATGGCATTCAATATTACACCAGTTGTTGATTTCGATGAAATT
ACATATCACTTTTTGGATGTTGTTCATGCTAAGCTAGCAATCGAAAAGGT
GACATTTGTTGGTATCATCAGAGAGGTCAGTGAAGCTGCAACCAATATTT
CGTACAAAATTGATGACATGACTGGTGACTTTATATCAGTTCGAAAATGG
CTAGATGACGAGAAATCAAGAGCTCAATCGCTTCTACCAGTAACTGCAGC
AATCATTCAAAAAGCTGACTATAATGCAACAGAAGATGTTTTTCGATTTG
AAGGAGTCGAAATTCACCAAGGTGATGGAGGAAGTGGAGGTGGATTTATG
AGCCCTGGGTTTGGTGGATCACAAACACCAGGTCCAGATGCTAAAGATTT
GGTGATAACTATCAAATGAATTTCCAAGGAATTGTATCGAATGGTTGAGT
AACGAAGGACACATCTATTCAACGATAGACGATGATCACTATAGATCAAC
ATCTAGTTAAATTGTTGGTGGCTCATCTACAGCACCGTTGGGTGGGGTAC
AAACCCCTGCTGGTGCAAATGCTGATAACTTTGGTGGTGGTTACAATGAT
GCAGGCTTGACCGGTCAAAACAAATTGGTCTTCAATTACATTTCTGCGTG
CACTGAAGAACAAGGAATCCACTTTCAGTCGTTGAAAAATAAATGTCGTG
GAATGCAAGAAAAGCAGTTGAGGAGAAGACCGCATTCAAGAGATCAGAGT
GCCGAGAAAATACATACGTTCGAGTGGTTGGAAATATGAAAGCACTATCT
GAGGGGAAATTAAGAAATGTTATGGCATTCAATATTACACCAGTTGTTGA
TTTCGATGAAATTACATATCACTTTTTGGATGTTGTTCATGCTAAGCTAG
CAATCGAAAAGGTGACATTTGTTGGTATCATCAGAGAGGTCAGTGAAGCT
GCAACCAATATTTCGTACAAAATTGATGACATGACTGGTGACTTTATATC
AGTTCGAAAATGGCTAGATGACGAGAAATCAAGAGCTCAATCGCTTCTAC
CAGTAACTGCAGCAATCATTCAAAAAGCTGACTATAATGCAACAGAAGAT
GTTTTTCGATTTGAAGGAGTCGAAATTCACCAAGGTGATGGAGGAAGTGG
AGGTGGATTTATGAGCCCTGGGTTTGGTGGATCACAAACACCAGGTCCAG
ATGCTAAAGATTTGGTGATAACTATCAAATGAATTTCCAAGGAATTGTAT
CGAATGGTTGAGTAACGAAGGACACATCTATTCAACGATAGACGATGATC
ACTATAGATCAACATCTAGTTAAATTGTTGGTGGCTCATCTACAGCACCG
TTGGGTGGGGTACAAACCCCTGCTGGTGCAAATGCTGATAACTTTGGTGG
TGGTTACAATGATGCAGGCTTGACCGGTCAAAACAAATTGGTCTTCAATT
ACATTTCTGCGTGCACTGAAGAACAAGGAATCCACTTTCAGTCGTTGAAA
AATAAATGTCGTGGAATGCAAGAAAAGCAGTTGAGGAGAAGACCGCATTC
AAGAGATCAGAGTGCCGAGAAAATACATACGTTCGAGTGGTTGGAAATAT
GAAAGCACTATCTGAGGGGAAATTAAGAAATGTTATGGCATTCAATATTA
CACCAGTTGTTGATTTCGATGAAATTACATATCACTTTTTGGATGTTGTT
CATGCTAAGCTAGCAATCGAAAAGGTGACATTTGTTGGTATCATCAGAGA
GGTCAGTGAAGCTGCAACCAATATTTCGTACAAAATTGATGACATGACTG
GTGACTTTATATCAGTTCGAAAATGGCTAGATGACGAGAAATCAAGAGCT
CAATCGCTTCTACCAGTAACTGCAGCAATCATTCAAAAAGCTGACTATAA
TGCAACAGAAGATGTTTTTCGATTTGAAGGAGTCGAAATTCACCAAGGTG
ATGGAGGAAGTGGAGGTGGATTTATGAGCCCTGGGTTTGGTGGATCACAA
ACACCAGGTCCAGATGCTAAAGATTTGGTGATAACTATCAAATGAATTTC
CAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033746XLOC_033746Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053453-exon-scaffold_231-1575043694:145567..145917TCONS_00053453-exon-scaffold_231-1575043694:145567..145917Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1575043694:132180..132199TCONS_00053453-exon-scaffold_231-1575043694:132180..132199Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1575043694:131854..131928TCONS_00053453-exon-scaffold_231-1575043694:131854..131928Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1575043694:131460..131567TCONS_00053453-exon-scaffold_231-1575043694:131460..131567Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1575043694:131134..131247TCONS_00053453-exon-scaffold_231-1575043694:131134..131247Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1575043694:130631..130819TCONS_00053453-exon-scaffold_231-1575043694:130631..130819Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1575043694:129932..130143TCONS_00053453-exon-scaffold_231-1575043694:129932..130143Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1575043694:128988..129663TCONS_00053453-exon-scaffold_231-1575043694:128988..129663Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1510915933:145567..145917TCONS_00053453-exon-scaffold_231-1510915933:145567..145917Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1510915933:132180..132199TCONS_00053453-exon-scaffold_231-1510915933:132180..132199Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1510915933:131854..131928TCONS_00053453-exon-scaffold_231-1510915933:131854..131928Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1510915933:131460..131567TCONS_00053453-exon-scaffold_231-1510915933:131460..131567Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1510915933:131134..131247TCONS_00053453-exon-scaffold_231-1510915933:131134..131247Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1510915933:130631..130819TCONS_00053453-exon-scaffold_231-1510915933:130631..130819Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1510915933:129932..130143TCONS_00053453-exon-scaffold_231-1510915933:129932..130143Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1510915933:128988..129663TCONS_00053453-exon-scaffold_231-1510915933:128988..129663Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1491911889:145567..145917TCONS_00053453-exon-scaffold_231-1491911889:145567..145917Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1491911889:132180..132199TCONS_00053453-exon-scaffold_231-1491911889:132180..132199Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1491911889:131854..131928TCONS_00053453-exon-scaffold_231-1491911889:131854..131928Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1491911889:131460..131567TCONS_00053453-exon-scaffold_231-1491911889:131460..131567Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1491911889:131134..131247TCONS_00053453-exon-scaffold_231-1491911889:131134..131247Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1491911889:130631..130819TCONS_00053453-exon-scaffold_231-1491911889:130631..130819Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1491911889:129932..130143TCONS_00053453-exon-scaffold_231-1491911889:129932..130143Clytia hemisphaericaexon
TCONS_00053453-exon-scaffold_231-1491911889:128988..129663TCONS_00053453-exon-scaffold_231-1491911889:128988..129663Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Replication protein ATCONS_00053453-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_231supercontigscaffold_231:128988..145917 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
299.44	305.8	570.99	564.417	14.6653	13.6267	23.1877	23.3935	46.9386	39.8038	39.0858	42.7504	35.3128	36.4409	34.9801	37.1918	66.2515	57.8285	16.1049	18.2534	46.1174	47.2605	85.3807	82.1335	47.722	60.7907	32.1855	22.9551	33.8369	37.5621
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014646Rfa2/RPA32
IPR011991WHTH_DNA-bd_dom
IPR014892RPA_C
IPR012340NA-bd_OB-fold
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0006260DNA replication
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Blast
[Close]
BLAST of TCONS_00053453 vs. Swiss-Prot (Human)
Match: RFA2 (Replication protein A 32 kDa subunit OS=Homo sapiens GN=RPA2 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 3.223e-50
Identity = 96/243 (39.51%), Postives = 141/243 (58.02%), Query Frame = 3 
Query:  426 TPGPDA--KKSRAQSLLPVTAAIIQKADYNATEDVFRFEGVEIHQVTFVGIIREVSEAATNISYKIDDMTGDFISVRKWLDDEEKTAFKRSECRENTYVRVVGNMKALSEGKLRNVMAFNITPVVDFDEITYHFLDVVHAKLAIEKIVGGSSTAPLGGVQTPAGANADNFGGG--YNDAGLTGQNKLVFNYISACTEEQGIHFQSLKNKCRGMQEKQLRNCIEWLSNEGHIYSTIDDDHYRST 1142
            +P P    KKSRA++   V   I Q       ++VFR   VEI QVT VGIIR   +A TNI YKIDDMT   + VR+W+D ++ T+ + +     TYV+V G++++    K  +++AF I P+ D +E T H L+V++A + + K      +A    +  P  + A NFGG       GLT     V N I AC   +G++FQ LKN+ + M    ++  +++LSNEGHIYST+DDDH++ST
Sbjct:   29 SPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDD-TSSENTVVPPETYVKVAGHLRSFQNKK--SLVAFKIMPLEDMNEFTTHILEVINAHMVLSK-ANSQPSAGRAPISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDDHFKST 267
The following BLAST results are available for this feature:
BLAST of TCONS_00053453 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFA23.223e-5039.51Replication protein A 32 kDa subunit OS=Homo sapie... [more]
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