TCONS_00053420 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053420
Unique NameTCONS_00053420
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053420 ID=TCONS_00053420|Name=TCONS_00053420|organism=Clytia hemisphaerica|type=transcript|length=546bp
ggaaaGTGCTTATTTTGTTAACAACTAATTATATTATTAAGAATATTGAC
TAAAATTCTGATTTGTTCATGTAATAAAGAGGTATTACATTGAAAACCAA
CGAGAACATGATACATTTTGGATGAAAAAGAGCTTACtagaatgaattaa
aaaatatttgccaGTCCTATTCAAGATTTAGATTAAACTTGTCTTCTAGC
TTTTTGATCAGTGACAAAACATTGCGCACCACCAAGTAGTCCTTATCATC
TGTTGGTCTTAACAAGTAAGTGCTATCAGATTTGATAGTATCCATCTCCA
TGGTTCTGAGTTTTTCTTTAGAATCATCCCAAAGAAGAGTCAATTTGATC
TGGATTTGAGCTACTAAGTCTTTCAAGTCCTCTTTGTTATCCTTCAACTT
GCAAGCCTCGTATTGATTTGCTAGAGTATCATTTCCAAAGAGTGATGTCA
AAATGGactttgttgttattttctgtcTTCGCAATTGTAACACTTCCCTT
TTTTTGTTTCTGCTGCCTGTGAAAAAAGAGGAAACAGTATAAGcat
Run BLAST on NCBI

protein sequence of TCONS_00053420-protein

>TCONS_00053420-protein ID=TCONS_00053420-protein|Name=TCONS_00053420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
AYTVSSFFTGSRNKKREVLQLRRQKITTKSILTSLFGNDTLANQYEACKL
KDNKEDLKDLVAQIQIKLTLLWDDSKEKLRTMEMDTIKSDSTYLLRPTDD
KDYLVVRNVLSLIKKLEDKFNLNLE
Run BLAST on NCBI

transcript from alignment at scaffold_230:47094..47639

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053420 ID=TCONS_00053420|Name=TCONS_00053420|organism=Clytia hemisphaerica|type=transcript|length=546bp|location=Sequence derived from alignment at scaffold_230:47094..47639 (Clytia hemisphaerica)
atgCTTATACTGTTTCCTCTTTTTTCACAGGCAGCAGAAACAAAAAAAGG
GAAGTGTTACAATTGCGAAgacagaaaataacaacaaagtCCATTTTGAC
ATCACTCTTTGGAAATGATACTCTAGCAAATCAATACGAGGCTTGCAAGT
TGAAGGATAACAAAGAGGACTTGAAAGACTTAGTAGCTCAAATCCAGATC
AAATTGACTCTTCTTTGGGATGATTCTAAAGAAAAACTCAGAACCATGGA
GATGGATACTATCAAATCTGATAGCACTTACTTGTTAAGACCAACAGATG
ATAAGGACTACTTGGTGGTGCGCAATGTTTTGTCACTGATCAAAAAGCTA
GAAGACAAGTTTAATCTAAATCTTGAATAGGACtggcaaatattttttaa
ttcattctaGTAAGCTCTTTTTCATCCAAAATGTATCATGTTCTCGTTGG
TTTTCAATGTAATACCTCTTTATTACATGAACAAATCAGAATTTTAGTCA
ATATTCTTAATAATATAATTAGTTGTTAACAAAATAAGCACtttcc

Coding sequence (CDS) from alignment at scaffold_230:47094..47639

>TCONS_00053420 ID=TCONS_00053420|Name=TCONS_00053420|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_230:47094..47639 (Clytia hemisphaerica)
gCTTATACTGTTTCCTCTTTTTTCACAGGCAGCAGAAACAAAAAAAGGGA
AGTGTTACAATTGCGAAgacagaaaataacaacaaagtCCATTTTGACAT
CACTCTTTGGAAATGATACTCTAGCAAATCAATACGAGGCTTGCAAGTTG
AAGGATAACAAAGAGGACTTGAAAGACTTAGTAGCTCAAATCCAGATCAA
ATTGACTCTTCTTTGGGATGATTCTAAAGAAAAACTCAGAACCATGGAGA
TGGATACTATCAAATCTGATAGCACTTACTTGTTAAGACCAACAGATGAT
AAGGACTACTTGGTGGTGCGCAATGTTTTGTCACTGATCAAAAAGCTAGA
AGACAAGTTTAATCTAAATCTTGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033727XLOC_033727Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053420-proteinTCONS_00053420-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053420-exon-scaffold_230-1491911889:47094..47639TCONS_00053420-exon-scaffold_230-1491911889:47094..47639Clytia hemisphaericaexon
TCONS_00053420-exon-scaffold_230-1510915933:47094..47639TCONS_00053420-exon-scaffold_230-1510915933:47094..47639Clytia hemisphaericaexon
TCONS_00053420-exon-scaffold_230-1575043694:47094..47639TCONS_00053420-exon-scaffold_230-1575043694:47094..47639Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_230supercontigscaffold_230:47094..47639 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.631651	0.255022	0.934328	1.43594	0	0	0.135348	0.43198	0.620994	0.692711	0	0.140225	0.309005	0.290846	0.0908259	0.210753	0.0790297	0.378064	0.447639	0	0	0	0.120706	0.329219	0.339088	0.236078	0.219326	0.462173	0.467389	0.341893
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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