TCONS_00053409 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053409
Unique NameTCONS_00053409
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053409 ID=TCONS_00053409|Name=TCONS_00053409|organism=Clytia hemisphaerica|type=transcript|length=708bp
TTTGCAAAGCTCTATCAACTTTCTAGATCAAACGTTTACTTGATTTGGAC
TATCAATAAACGCTTTGAAAACCGAATCTATGATACTTAACTGTACCGAA
CAGGATTACCCAAAATCTATCATCAAATTGAGGAACATTGatatcaaaaa
cgtcaaaacgttCAAATATCTCGGAGCTTCCATTCACTTTGTGAGGAACC
GAATACCGGTGACATTGAGATTAATTACCGTATTCAACAGCCGACTAACG
AATTCGCAGAAATGACCAaccttcttcaaaatttcaatgtcCATTTGAAA
ACTCGTATCATCTTCTTAAATAGTTATGTACGTAGTCGCTTAATCTACTC
ATGCCAAAATTGGAATTTATATTCAAGCCAACTTGAGCGACTAAACGTCA
CATATCATATTCCTACGTCGAATGATTGGAGGTGGTTTTCGTTTTGTAAA
TGAGTCTAACAACGATTTCCGTTATCAGATAACCAACAAAAGACTCCATG
AGATATGTGGTACATCAGATTTGTCCAATTTCATTGGAAAACAGCAGCTG
GAATATGCTAAACATGTTATTCGTATGACCCACAAGCGTTCCATTAAACT
GTTGATGTTCAACGATGATAAGTACATGAAACGTGGAAGACCATTTAAAA
CTCTGCTAGATCAAGTAACTTATCAAAACTCCCTTACAACAGATGGTCTC
TGCAACAG
Run BLAST on NCBI

transcript from alignment at scaffold_23:15108..15815

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053409 ID=TCONS_00053409|Name=TCONS_00053409|organism=Clytia hemisphaerica|type=transcript|length=708bp|location=Sequence derived from alignment at scaffold_23:15108..15815 (Clytia hemisphaerica)
CTGTTGCAGAGACCATCTGTTGTAAGGGAGTTTTGATAAGTTACTTGATC
TAGCAGAGTTTTAAATGGTCTTCCACGTTTCATGTACTTATCATCGTTGA
ACATCAACAGTTTAATGGAACGCTTGTGGGTCATACGAATAACATGTTTA
GCATATTCCAGCTGCTGTTTTCCAATGAAATTGGACAAATCTGATGTACC
ACATATCTCATGGAGTCTTTTGTTGGTTATCTGATAACGGAAATCGTTGT
TAGACTCATTTACAAAACGAAAACCACCTCCAATCATTCGACGTAGGAAT
ATGATATGTGACGTTTAGTCGCTCAAGTTGGCTTGAATATAAATTCCAAT
TTTGGCATGAGTAGATTAAGCGACTACGTACATAACTATTTAAGAAGATG
ATACGAGTTTTCAAATGgacattgaaattttgaagaaggtTGGTCATTTC
TGCGAATTCGTTAGTCGGCTGTTGAATACGGTAATTAATCTCAATGTCAC
CGGTATTCGGTTCCTCACAAAGTGAATGGAAGCTCCGAGATATTTGaacg
ttttgacgtttttgatatCAATGTTCCTCAATTTGATGATAGATTTTGGG
TAATCCTGTTCGGTACAGTTAAGTATCATAGATTCGGTTTTCAAAGCGTT
TATTGATAGTCCAAATCAAGTAAACGTTTGATCTAGAAAGTTGATAGAGC
TTTGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033716XLOC_033716Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053409-exon-scaffold_23-1491911889:15108..15815TCONS_00053409-exon-scaffold_23-1491911889:15108..15815Clytia hemisphaericaexon
TCONS_00053409-exon-scaffold_23-1510915933:15108..15815TCONS_00053409-exon-scaffold_23-1510915933:15108..15815Clytia hemisphaericaexon
TCONS_00053409-exon-scaffold_23-1575043694:15108..15815TCONS_00053409-exon-scaffold_23-1575043694:15108..15815Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:15108..15815 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.237441	0.377343	0.641348	0.526371	0.575275	0.246771	0.182815	0.427872	0.0718517	0.245434	0.216094	0.237001	0.463954	0.546611	0.0468181	0.1811	0.0533728	0.251348	0.514338	0.85875	0.352731	0.797524	0.233838	0.445949	0.753789	0.930025	0.194978	0	0.139143	0.0803997
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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