TCONS_00053392 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053392
Unique NameTCONS_00053392
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053392 ID=TCONS_00053392|Name=TCONS_00053392|organism=Clytia hemisphaerica|type=transcript|length=797bp
ACAACGGGTTTTCGACGCCTAGCGTCGATGATCAACGACTAAACTACGCA
GATGTCCCCGAGCGACGGATAATGGGTTAGCAGTGAGCAAATCCTTTAGC
TCGACATAGAAATGCAAATTAAGCCATATGTATTTGCTGGTAGAAGCAGC
TGTAGTTTCCATACATTGGTGATTTGAAGAATGTTTGATTCTGTTGTCCA
ATCATGTATGCATATCGTCTCTGCAAGCTCAGTGTTTCATTTGGTATTTC
AGATTTCCGTTGGTTGTAAAAGTTTTCCCACAAACATTGCATTTTAATGG
CTTTTCACCATTGTGAACACGTAAATGCACATAGAGATTGCTAGTGTTGA
CAAATCTTTTTTCACAATACTGGTTTGGTTTTTGTGCTTTAGAATTTGAT
CGTGTTTCACCAAAGAATTAATTAACTTGACAAAAGTAACGTCAAAGGTT
TAGAACGTGTCACTTTGACCTCCGAAATACTTATTGTgacgtttcgaacg
ttttttgTAGAGCATTGCAATGAAATCAGTTCAACGTAAAAGGGCTTGCG
CTTTTAGATTTGCGTAAAATTTCGTGTCCCGAAAGGGTTTTTTGCTTGCG
ACGTCAGTCTTTTGCCTATAAAAATATTTCCCAGACCTAATCGCTTACCG
CCTCTCGAAAGATCCCTTTTTTCGAATGAGCCAAAAGAATTCCCCTCCGG
AAATTGTTGTCACAGGTCGACTAAGGAATACTACTATTACTGAAACTTTA
TTGACTAGCTATATTTATAAGATGATTATTTATTAAATcaaaagaag
Run BLAST on NCBI

transcript from alignment at scaffold_229:16064..16860

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053392 ID=TCONS_00053392|Name=TCONS_00053392|organism=Clytia hemisphaerica|type=transcript|length=797bp|location=Sequence derived from alignment at scaffold_229:16064..16860 (Clytia hemisphaerica)
cttcttttgATTTAATAAATAATCATCTTATAAATATAGCTAGTCAATAA
AGTTTCAGTAATAGTAGTATTCCTTAGTCGACCTGTGACAACAATTTCCG
GAGGGGAATTCTTTTGGCTCATTCGAAAAAAGGGATCTTTCGAGAGGCGG
TAAGCGATTAGGTCTGGGAAATATTTTTATAGGCAAAAGACTGACGTCGC
AAGCAAAAAACCCTTTCGGGACACGAAATTTTACGCAAATCTAAAAGCGC
AAGCCCTTTTACGTTGAACTGATTTCATTGCAATGCTCTAcaaaaaacgt
tcgaaacgtcACAATAAGTATTTCGGAGGTCAAAGTGACACGTTCTAAAC
CTTTGACGTTACTTTTGTCAAGTTAATTAATTCTTTGGTGAAACACGATC
AAATTCTAAAGCACAAAAACCAAACCAGTATTGTGAAAAAAGATTTGTCA
ACACTAGCAATCTCTATGTGCATTTACGTGTTCACAATGGTGAAAAGCCA
TTAAAATGCAATGTTTGTGGGAAAACTTTTACAACCAACGGAAATCTGAA
ATACCAAATGAAACACTGAGCTTGCAGAGACGATATGCATACATGATTGG
ACAACAGAATCAAACATTCTTCAAATCACCAATGTATGGAAACTACAGCT
GCTTCTACCAGCAAATACATATGGCTTAATTTGCATTTCTATGTCGAGCT
AAAGGATTTGCTCACTGCTAACCCATTATCCGTCGCTCGGGGACATCTGC
GTAGTTTAGTCGTTGATCATCGACGCTAGGCGTCGAAAACCCGTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033705XLOC_033705Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053392-exon-scaffold_229-1491911889:16064..16860TCONS_00053392-exon-scaffold_229-1491911889:16064..16860Clytia hemisphaericaexon
TCONS_00053392-exon-scaffold_229-1510915933:16064..16860TCONS_00053392-exon-scaffold_229-1510915933:16064..16860Clytia hemisphaericaexon
TCONS_00053392-exon-scaffold_229-1575043694:16064..16860TCONS_00053392-exon-scaffold_229-1575043694:16064..16860Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_229supercontigscaffold_229:16064..16860 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0603363	0	0.0683158	0	0.895036	0.964458	0.930862	0.653596	0.610131	0.377873	0.550159	0.482204	0.561789	1.00015	0	0	0	0	0	0.134233	0	0.0853636	0	0.062895	0.194341	1.21411	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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