TCONS_00053359 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053359
Unique NameTCONS_00053359
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053359 ID=TCONS_00053359|Name=TCONS_00053359|organism=Clytia hemisphaerica|type=transcript|length=497bp
ATTGAATTCAAAAACTAACGTCGAGTGATCACTTTTTCCCAGTGGAGTGA
GGTATTTTATGTTGTTGACTTGGTTTTCTTCCTCGGTCAATAAGATCTAT
CAGTGATGCTTCATCTGAGCCTCGACATCTTGTGTTTCCTGTAACATGCT
GATAGAAGTAGCAATCTCGTACAGcttcaatgaatctaaattTCAAGCTA
TTAACGCTTTTGTTCGTAGTCCAGTGTAGCCAGTTTATATCCTTTAAGTT
TAAGTCTCCGACGAAACATTTAAGACTGTATTTTTTCGTCCAGCTGAGTT
TTTGCATCAGCTTTAGCAATTTTTCGTTGTTGCTGTCAGAAGTGTCAGTC
TTTGTTGGACTTCGATATACGCAACCGAACAATAAGGTGTCTTGTTTTGA
GATTCTTATTTCCAGGAAGCATGTTTcttcaaaatcaagaaaatctttAA
GGTGTACGATTTGGTTTGTTATTGAGTTATGTACATAGATTGCCACT
Run BLAST on NCBI

protein sequence of TCONS_00053359-protein

>TCONS_00053359-protein ID=TCONS_00053359-protein|Name=TCONS_00053359-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
VAIYVHNSITNQIVHLKDFLDFEETCFLEIRISKQDTLLFGCVYRSPTKT
DTSDSNNEKLLKLMQKLSWTKKYSLKCFVGDLNLKDINWLHWTTNKSVNS
LKFRFIEAVRDCYFYQHVTGNTRCRGSDEASLIDLIDRGRKPSQQHKIPH
STGKK
Run BLAST on NCBI

transcript from alignment at scaffold_228:153096..153592

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053359 ID=TCONS_00053359|Name=TCONS_00053359|organism=Clytia hemisphaerica|type=transcript|length=497bp|location=Sequence derived from alignment at scaffold_228:153096..153592 (Clytia hemisphaerica)
AGTGGCAATCTATGTACATAACTCAATAACAAACCAAATCGTACACCTTa
aagattttcttgattttgaagAAACATGCTTCCTGGAAATAAGAATCTCA
AAACAAGACACCTTATTGTTCGGTTGCGTATATCGAAGTCCAACAAAGAC
TGACACTTCTGACAGCAACAACGAAAAATTGCTAAAGCTGATGCAAAAAC
TCAGCTGGACGAAAAAATACAGTCTTAAATGTTTCGTCGGAGACTTAAAC
TTAAAGGATATAAACTGGCTACACTGGACTACGAACAAAAGCGTTAATAG
CTTGAaatttagattcattgaagCTGTACGAGATTGCTACTTCTATCAGC
ATGTTACAGGAAACACAAGATGTCGAGGCTCAGATGAAGCATCACTGATA
GATCTTATTGACCGAGGAAGAAAACCAAGTCAACAACATAAAATACCTCA
CTCCACTGGGAAAAAGTGATCACTCGACGTTAGTTTTTGAATTCAAT

Coding sequence (CDS) from alignment at scaffold_228:153096..153592

>TCONS_00053359 ID=TCONS_00053359|Name=TCONS_00053359|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_228:153096..153592 (Clytia hemisphaerica)
GTGGCAATCTATGTACATAACTCAATAACAAACCAAATCGTACACCTTaa
agattttcttgattttgaagAAACATGCTTCCTGGAAATAAGAATCTCAA
AACAAGACACCTTATTGTTCGGTTGCGTATATCGAAGTCCAACAAAGACT
GACACTTCTGACAGCAACAACGAAAAATTGCTAAAGCTGATGCAAAAACT
CAGCTGGACGAAAAAATACAGTCTTAAATGTTTCGTCGGAGACTTAAACT
TAAAGGATATAAACTGGCTACACTGGACTACGAACAAAAGCGTTAATAGC
TTGAaatttagattcattgaagCTGTACGAGATTGCTACTTCTATCAGCA
TGTTACAGGAAACACAAGATGTCGAGGCTCAGATGAAGCATCACTGATAG
ATCTTATTGACCGAGGAAGAAAACCAAGTCAACAACATAAAATACCTCAC
TCCACTGGGAAAAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033673XLOC_033673Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053359-proteinTCONS_00053359-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053359-exon-scaffold_228-1491911889:153096..153592TCONS_00053359-exon-scaffold_228-1491911889:153096..153592Clytia hemisphaericaexon
TCONS_00053359-exon-scaffold_228-1510915933:153096..153592TCONS_00053359-exon-scaffold_228-1510915933:153096..153592Clytia hemisphaericaexon
TCONS_00053359-exon-scaffold_228-1575043694:153096..153592TCONS_00053359-exon-scaffold_228-1575043694:153096..153592Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:153096..153592 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.166124	0.131273	0.316752	0.14827	0	0	0	0.574291	0.0819275	0	0	0	0	0	0.13095	0.13703	0	0	0	0.256821	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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