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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053353 ID=TCONS_00053353|Name=TCONS_00053353|organism=Clytia hemisphaerica|type=transcript|length=1200bp
CTTGCTAGAATTGATTCACTTATTCTATTTAGAATGCACAATTTCGTAGA
TTTTCAAACCATCTTGATAGATTTACGAACTATTTTACAATATGATGTAT
TTAGTAattaaaccaatcaaatttaccttaccatttttttgattattttg
aaaattttcttatgTCTCCTTCTTGTTATATAAGTGAACTAAAGGGCTGA
TGGGGTGAGAATGAAAGGTTTGATGTCTTTGTGTTTTGTAATACACGATA
TGCCTTCAAGTTTCTCTTTGAGAATACTACATTCTTTGCAACATAGACAT
TCTTCCAAAGTGAAATCCATGCCAATTATACAGTTTCTACAAGCTCACCA
ATGCAAATTCTCAAGTCTACTAGACTCCAGATCATCATTATCCCGTTCGC
AGTCCCTCGAGGACGAGCTTTCATCTTCTTTGTGCTTTGCTGAAAGACCT
GCTAGCTCTTTTTTTGAATACTCAGGTTCAAAACCATAAAACCCTCCAAT
AGCTTCATCTTCTTCATCTGAAGTGTCTGTCTCTGATTCTGATGTTTCTA
TCTCTGTTTCTTCATCTGAAGTGTCTGTCTCTGATTCTGATGTTTCTATC
TCTGTTTCTTCATCTGAAGTGTCTGTCTCTGATTCTGATGTGTCTAACTC
TGTTTCTTCATCAGTGGAAGGGTTAAAAATGTCTGATAAATCACTTTCTT
CACTTGAAGATTCACTTGACGACATTTTACTCTGAGTTTAAATGCCTAAA
TAGTTTTATAAAACTTTAAAGGGGATCTAAGGGCAAAGATTTTCCTATAA
TAATTGTTTGCAAATTATAGAAACTTTATATCGTGGAAATTAAAATGAGC
TatattatatttaaaaatcttAACTAGAAACTGAGTATCcactgaaataa
aattttaagcTCTAACTCCAAGCGGTTCAGATTTTATATATGGCtgtttg
aaatttcaaagttGAGCGGTCTCAGCcaacaaaaaatctcaaatttggct
aaataggGATTTTGACCTCAAATTCCACTTGAATGATAATAGAAACAATA
TTCTGAAAATATGTACAACTTTTACAAGAAAACAAATATACAGACAACCG
GTTATTTAAAATACATGGCCCGAAATCAGGCTTTTAAACCTTGCGCCAAA
GTTGAGGCATTTTTAAAGGCAAAAACCTCAAGGAGAGCTTTTCATTTCCC Run BLAST on NCBI protein sequence of TCONS_00053353-protein >TCONS_00053353-protein ID=TCONS_00053353-protein|Name=TCONS_00053353-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MSSSESSSEESDLSDIFNPSTDEETELDTSESETDTSDEETEIETSESET
DTSDEETEIETSESETDTSDEEDEAIGGFYGFEPEYSKKELAGLSAKHKE
DESSSSRDCERDNDDLESSRLENLHW Run BLAST on NCBI transcript from alignment at scaffold_228:7473..8672 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053353 ID=TCONS_00053353|Name=TCONS_00053353|organism=Clytia hemisphaerica|type=transcript|length=1200bp|location=Sequence derived from alignment at scaffold_228:7473..8672 (Clytia hemisphaerica)
GGGAAATGAAAAGCTCTCCTTGAGGTTTTTGCCTTTAAAAATGCCTCAAC
TTTGGCGCAAGGTTTAAAAGCCTGATTTCGGGCCATGTATTTTAAATAAC
CGGTTGTCTGTATATTTGTTTTCTTGTAAAAGTTGTACATATTTTCAGAA
TATTGTTTCTATTATCATTCAAGTGGAATTTGAGGTCAAAATCcctattt
agccaaatttgagattttttgttgGCTGAGACCGCTCaactttgaaattt
caaacaGCCATATATAAAATCTGAACCGCTTGGAGTTAGAgcttaaaatt
ttatttcagtgGATACTCAGTTTCTAGTTaagatttttaaatataatatA
GCTCATTTTAATTTCCACGATATAAAGTTTCTATAATTTGCAAACAATTA
TTATAGGAAAATCTTTGCCCTTAGATCCCCTTTAAAGTTTTATAAAACTA
TTTAGGCATTTAAACTCAGAGTAAAATGTCGTCAAGTGAATCTTCAAGTG
AAGAAAGTGATTTATCAGACATTTTTAACCCTTCCACTGATGAAGAAACA
GAGTTAGACACATCAGAATCAGAGACAGACACTTCAGATGAAGAAACAGA
GATAGAAACATCAGAATCAGAGACAGACACTTCAGATGAAGAAACAGAGA
TAGAAACATCAGAATCAGAGACAGACACTTCAGATGAAGAAGATGAAGCT
ATTGGAGGGTTTTATGGTTTTGAACCTGAGTATTCAAAAAAAGAGCTAGC
AGGTCTTTCAGCAAAGCACAAAGAAGATGAAAGCTCGTCCTCGAGGGACT
GCGAACGGGATAATGATGATCTGGAGTCTAGTAGACTTGAGAATTTGCAT
TGGTGAGCTTGTAGAAACTGTATAATTGGCATGGATTTCACTTTGGAAGA
ATGTCTATGTTGCAAAGAATGTAGTATTCTCAAAGAGAAACTTGAAGGCA
TATCGTGTATTACAAAACACAAAGACATCAAACCTTTCATTCTCACCCCA
TCAGCCCTTTAGTTCACTTATATAACAAGAAGGAGAcataagaaaatttt
caaaataatcaaaaaaatggtaaggtaaatttgattggtttaatTACTAA
ATACATCATATTGTAAAATAGTTCGTAAATCTATCAAGATGGTTTGAAAA
TCTACGAAATTGTGCATTCTAAATAGAATAAGTGAATCAATTCTAGCAAG
Coding sequence (CDS) from alignment at scaffold_228:7473..8672 >TCONS_00053353 ID=TCONS_00053353|Name=TCONS_00053353|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_228:7473..8672 (Clytia hemisphaerica)
ATGTCGTCAAGTGAATCTTCAAGTGAAGAAAGTGATTTATCAGACATTTT
TAACCCTTCCACTGATGAAGAAACAGAGTTAGACACATCAGAATCAGAGA
CAGACACTTCAGATGAAGAAACAGAGATAGAAACATCAGAATCAGAGACA
GACACTTCAGATGAAGAAACAGAGATAGAAACATCAGAATCAGAGACAGA
CACTTCAGATGAAGAAGATGAAGCTATTGGAGGGTTTTATGGTTTTGAAC
CTGAGTATTCAAAAAAAGAGCTAGCAGGTCTTTCAGCAAAGCACAAAGAA
GATGAAAGCTCGTCCTCGAGGGACTGCGAACGGGATAATGATGATCTGGA
GTCTAGTAGACTTGAGAATTTGCATTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053353-exon-scaffold_228-1491911889:7473..8672 | TCONS_00053353-exon-scaffold_228-1491911889:7473..8672 | Clytia hemisphaerica | exon |
| TCONS_00053353-exon-scaffold_228-1510915933:7473..8672 | TCONS_00053353-exon-scaffold_228-1510915933:7473..8672 | Clytia hemisphaerica | exon |
| TCONS_00053353-exon-scaffold_228-1575043694:7473..8672 | TCONS_00053353-exon-scaffold_228-1575043694:7473..8672 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:7473..8672 . |
Blast
The following BLAST results are available for this feature:
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