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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053351 ID=TCONS_00053351|Name=TCONS_00053351|organism=Clytia hemisphaerica|type=transcript|length=1051bp
GAAAAAATTGGTAGCACTGAAATCTTGAGCTGAGAGCATTGACTGGTTTG
TAGCATTTCTTTTGTGGGCAATCACTCTGTCACAACTATGGTCCTGATTG
ATCGATCAAAACTTCTCTTAATGGTGGTTTCGTTTAGCTGCTGGCAAATC
ATCAAACCGACAACATCAGCAGCCATTGGTTTAGAAGATGAACTCATATC
AATGTTCGCTGAAACGACAGAACAGAGTGATTCCATTGTGTTTGTGTCTT
CTGAAAGtgaaacaaacaacaaaaacacAAGCTCCAGTACATTTCAAGAA
ACAGTCGAAAGCAAAACCAATAACAGAACAGAAGCGACTTCCTTGACAGA
ATCTGGCGTGTCAGAGAATGAGAATGAACCAGCTACAACAATTCTAACAG
TAACTACACCGATAGTTTCTACAACTCAAATATCTACTACAAATAACATT
CCAAATGTAGTTAAGAGTAATTCACACACAACTTCGAGCTCATTAACATC
AACTATTAAAACAACGGAAACGGCCATCCCTCTGACGGCAACGACTACCC
CTTCTACAACAACAACCGTCCCTACTACGACAACGACTACcccgacaaca
acaacaaccacccctacaacaacaacgaccacacctactacgacaacgac
cacccctacaactacaacgaccacacttactacgacaacgaccaccacaa
caactacaacgaccacccctacaACTACAACGGCTACTCCTACAACTACG
ACGACCACCCCTTCAACTACAACGACCAAACCGCTACCTGTTTACAGAAA
TTGTGAACATTTTCCAGTTTGTTCAGAACCAGACAAAGTTTTCAGAAACT
GCAATCGATGTTTCGGAACACCTGGTGATTTTCAATTTATTATGTTTTGG
GGGAATAGCTGTTTTTGCTATAAATTACCACCACAGATCCCGCAACCGTG
ATTAAAGTTTacgttattttaattttttttgtatattgTATTTATATTTA
GAAAAGTATACTAAGGCTTCATTATtaacaaattataaaaatataatgat
T Run BLAST on NCBI protein sequence of TCONS_00053351-protein >TCONS_00053351-protein ID=TCONS_00053351-protein|Name=TCONS_00053351-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
MVLIDRSKLLLMVVSFSCWQIIKPTTSAAIGLEDELISMFAETTEQSDSI
VFVSSESETNNKNTSSSTFQETVESKTNNRTEATSLTESGVSENENEPAT
TILTVTTPIVSTTQISTTNNIPNVVKSNSHTTSSSLTSTIKTTETAIPLT
ATTTPSTTTTVPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTLTTT
TTTTTTTTTTPTTTTATPTTTTTTPSTTTTKPLPVYRNCEHFPVCSEPDK
VFRNCNRCFGTPGDFQFIMFWGNSCFCYKLPPQIPQP Run BLAST on NCBI transcript from alignment at scaffold_228:713374..718122- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053351 ID=TCONS_00053351|Name=TCONS_00053351|organism=Clytia hemisphaerica|type=transcript|length=4749bp|location=Sequence derived from alignment at scaffold_228:713374..718122- (Clytia hemisphaerica)
GAAAAAATTGGTAGCACTGAAATCTTGAGCTGAGGTATCAATTTTTTCAT
CTGTTACAATATTTTTCCAAGATTGAATTTCTTTTGTTTCCAGTCCTTTC
TTGGTGGTGTAGAATCTAAACCTTGCGACAAACAAACTGTGACATTTACT
GTAAAGATACACCCCCTTCTCACAGACCCGGTAGGACTTTTTCAGCCACT
GGGGATAAAAGTAACGGACTGAAACTTGAAGAGGATTGATATTCCCGTAT
TTTCTATGGCTGAGGATTTCAATCCTTTTTTTTCAAGTCAGGAAATTCAG
TGGGGATGGAAAAAATAGCACAATATTTTGCAGTGAGGATTTTCTTATCT
AGTTATTTTCGGCGGGGACAAAAATTGGAGTATGATTTTCCACTGGGGAT
GATATTTTGGCCAATTTTTCCAGTGGGAAGTGGTACCAGTGGGTCTTTGA
GAACGGGGTGTAAAGATTTGATTAATAAAGTTCCTAAAGCTGGAAAGAAC
TGTATAAAATGCTCTTCAAAATTCAAATCGTTCTACAATTTCAAAAAAAA
ATTCGGTCCCTTGAAAATCAGCCAGAAAGTTAGTTAGAATTCGATTTACA
AAAAAGAATAGGGTTCATAATTGATAAAGTGACTCGACTTCCATATAAAT
CACGTCAAGCCATGAACAGAAATCATTGATAGTTATCTCGTAAAAATATT
TCTCATATTTCCCGATCCGCCCCTAAGAATTCCGATTAATGTCGAAACGG
AATCGGCCAATTACGGATTACGCGCAAATCACATTTTTTATGTAAGTAAT
CTAAACTAGTTGGATATGGAGCCAAAAATGTGCGAATTATCACATCTGGT
CATCCACATTAAAAGTTCCTGATAAATACTCCCACATTGATACATCTTCC
TTCCCTTAATGTTTAATACAGAAAACAATTCATGTCTCTTGTCCTCCTTC
CCTTAATGTTTAATACAGAAAACAATTCATGTCTCTTGTCCTCCTCCTGT
CAGCCAATTAGGAGTACACCCCTGTGTCACAGACCCACTGGGACCCCAGC
CCCATTGGAAAATTTGGCAAAAATCTTGTTCCCGGTGGGAAAATATCCTG
GAATTTCAGCCCCATTCGAAATTCAATGTTTAAAAACTGCACTCCAAAAC
CATACCCACTGGATCTTTTAACCTTAGAACAATAAAATTTCTATTCCCAT
CCGGATTTCAATAGGAATTTTTATCCCCACTGAGGAAAAGTTTTCCAGTG
GGTCTATGAGACAGGGGTGTGAATGTATACCGCTGAAGTTCGAGAATCGG
TGCAAACGTTAGGCTAATCTTTGTGGAAATCACTGTGCAGCATTTCCAAA
GCAACCTCTGGTCATCCGGCATAATAGGATACAAAATAACCCATTATCAG
AAATACTAAAATCATCCATAGTTTNACTGTGCAGCATTTCCAAAGTAACC
TCTGGTCATCCGGCATAATAGGATACAAAATAACCCATTATCAGAAATAC
TAAAATCATCCATAGTTTATTTACCCCGTCACCAAACTTCCCGAAACTTG
TTTTTATTTACTTTTTGGTTAAGATATAACGTCACTACATTAAGTATGTG
CAAAAGAATTCATTTTTTTAAAGTGTAAAATGTGCATTTTGAAGATCTGG
TGATGTCATGCGTACTGACAAAACAAAATNTAAAGTGTAAAGTGTGCATT
TTGAAGATCTGGTGATGTCATGCGTACTGACAAAACAAAATCGCGTGATT
GTCCTTCTGAGGGGATAAATCTCATGTTCTTGCCCCTGAACTTTATTATG
TTAAAATGGAATTGATGATTTTAAAGCTATTCTCCTGGCGAAAGTATCAA
TCATTCCTTTCCGATTGACCCTGTTAGAACGTTTTAGCCACTGACTTGAA
GAATATACTGACTTTAGAGAATCGCCAGATTTCAAATGTTTGGATTTTCC
AGTAAAGAATAGAGTACAGTGTATTCTCTCCTCCTCTAAGGTCCCCGCTT
CGCCGCTTCTTCTTCGCCCTGTTCTTATTAGGACCCCCTGGTTTATTTAT
TTTTGAAAATATTTTCAGCTACCACAAGTTGTGTTTCTCTAAAGAGTCTT
CTAATAGCTTTAATAATTACCTTATTTTGAGTGTTTAGGAGAAGAATTTC
GGACCTTTTATTCAGATCCACCCTTTTATTCGATTTTTAAAGAATTTTGG
ACCTTCCCTTTTGTTCAGGCCCTCTGCTATTCGGGCCCTCAAAGTAATCT
GAATGAAACGGAAGACCAAATTTTCTGATCGAATCTTTTCCAATGCAGAG
GAAAACCAAAGGGTGTGTTTAAAGAGAGATCATATTCTAACTAGAAAAGC
AAGACACTAATCAAAAAAGAAAGATGGGACCCTTTCTACTATCTACCTAT
TATCTATGCTTGGAGAAAAACTTATAGCAGTGATTAGATTTTTTGCCTAG
GTGGAAGAAAAACGGTATTTATTTTGCTTCAAGAGAACTTTAAGGATTCA
TCTTAACAACAAAAACATACAAGAGCGTCAATGAAAAAAGATGAGGTCAT
CGCTCTTATGTGGTTTCAAATTAATTAAGGTTTTGGTTTAATGGCAAATT
TGGTGCCAATTTTCTGATTTTGAATTCATTCTTCTATTTATAAACGGTAT
CAGATTCGCCCATATAAAAGTTTGTCATCAATTCAGGTATCACTTTATAA
AAAAATAGAAATCATATTATACCGTAGTCTCCTCTTCGTTACGATACTTC
GAATTGTTTTCATCTTGTGAGAGGAAAACACTGATTGAAATTGTGAATTT
ATTTGTTTAGAGCATTGACTGGTTTGTAGCATTTCTTTTGTGGGCAATCA
CTCTGTCACAAGTAAGTAATATACTCTGAGTTTGAATATCTTTTCACATT
CTGTCGTACTGAAAATAGGTTCTGGTTATCTCCAGGCTGTTAGAGTCAGT
TTTTTATCTTCTTAAGTCTCTTACTAATGAAAAAGCCACAATATTAACTA
TAAAGGGTCGGAATTGAAGGGGTTTTCTAAAGGTACGTCGAAGTCAAAGG
GTAGAAAATATTTTGAAAAGCGCCTCTCTAAGGTTCACTTTTTCATCAAG
TTATTCTTTCTNTAAGGGTAGAAAATATTTTGAAAGGCGCCTCTCTAAGG
TTCACTTTTTCACCAAGTTATTCTTTCTGAGGCTCAATTTCAGGTAAATA
TTTTTGTTAAATATGTGCATGTACATGTATAAGTTTTAAGACTGATTTTT
TTGTTAACAGCTATGGTCCTGATTGATCGATCAAAACTTCTCTTAATGGT
GGTTTCGTTTAGCTGCTGGCAAATCATCAAACCGGTAAAATTCACTTATT
AGTCATATCTCTACAAACAATACCTAGGCCTACCTAGATGATCTAATACT
ATAATTGTACTGGTGTTGAACCAATGAATGTCTAAAAGTGTCCCTTCCAT
AGGGCCTTTTTGTTGAGAATTGATAGGTGTTTTATCAACCTCGTCCCCAT
GTATATTTACGTTACTGATGGGTGCCAGAGATTATCTAGCGGTATCAGTA
AGCATCAAAAAAGCTCATAATGCGCAGAGAACGAGGTTGGTGTTTTATAA
GATTGTATAACTCAAGATTACGTCATTTTTCATTTTGGAAACACCCGAAA
AAACCGGAATTTGAACCATTTGTTGTTATTCTTAGTAACACTCATGGCTC
AATTTACGGTGTTTTTGGGTGTTTCCGATAGGGAAAATGACGTAATCTTG
AGTTACACATATCAAGAGTTGCAGCAAAAAGTAACCTTTACATTTCATCA
ATTTATTCATCGATCGAGGTATTCTTTTAAATTATTTTTAAGCTATTTCT
ATTTCAGACAACATCAGCAGCCATTGGTTTAGAAGATGAACTCATATCAA
TGTTCGCTGAAACGACAGAACAGAGTGATTCCATTGTGTTTGTGTCTTCT
GAAAGTGAAACAAACAACAAAAACACAAGCTCCAGTACATTTCAAGAAAC
AGTCGAAAGCAAAACCAATAACAGAACAGAAGCGACTTCCTTGACAGAAT
CTGGCGTGTCAGAGAATGAGAATGAACCAGCTACAACAATTCTAACAGTA
ACTACACCGATAGTTTCTACAACTCAAATATCTACTACAAATAACATTCC
AAATGTAGTTAAGAGTAATTCACACACAACTTCGAGCTCATTAACATCAA
CTATTAAAACAACGGAAACGGCCATCCCTCTGACGGCAACGACTACCCCT
TCTACAACAACAACCGTCCCTACTACGACAACGACTACCCCGACAACAAC
AACAACCACCCCTACAACAACAACGACCACACCTACTACGACAACGACCA
CCCCTACAACTACAACGACCACACTTACTACGACAACGACCACCACAACA
ACTACAACGACCACCCCTACAACTACAACGGCTACTCCTACAACTACGAC
GACCACCCCTTCAACTACAACGACCAAACCGCTACCTGTTTACAGAAATT
GTGAACATTTTCCAGTTTGTTCAGAACCAGACAAAGTTTTCAGAAACTGC
AATCGATGTTTCGGAACACCTGGTGATTTTCAATTTATTATGTTTTGGGG
GAATAGCTGTTTTTGCTATAAATTACCACCACAGATCCCGCAACCGTGAT
TAAAGTTTACGTTATTTTAATTTTTTTTGTATATTGTATTTATATTTAGA
AAAGTATACTAAGGCTTCATTATTAACAAATTATAAAAATATAATGATT Coding sequence (CDS) from alignment at scaffold_228:713374..718122- >TCONS_00053351 ID=TCONS_00053351|Name=TCONS_00053351|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_228:713374..718122- (Clytia hemisphaerica)
ACAACATCAGCAGCCATTGGTTTAGAAGATGAACTCATATCAATGTTCGC
TGAAACGACAGAACAGAGTGATTCCATTGTGTTTGTGTCTTCTGAAAGTG
AAACAAACAACAAAAACACAAGCTCCAGTACATTTCAAGAAACAGTCGAA
AGCAAAACCAATAACAGAACAGAAGCGACTTCCTTGACAGAATCTGGCGT
GTCAGAGAATGAGAATGAACCAGCTACAACAATTCTAACAGTAACTACAC
CGATAGTTTCTACAACTCAAATATCTACTACAAATAACATTCCAAATGTA
GTTAAGAGTAATTCACACACAACTTCGAGCTCATTAACATCAACTATTAA
AACAACGGAAACGGCCATCCCTCTGACGGCAACGACTACCCCTTCTACAA
CAACAACCGTCCCTACTACGACAACGACTACCCCGACAACAACAACAACC
ACCCCTACAACAACAACGACCACACCTACTACGACAACGACCACCCCTAC
AACTACAACGACCACACTTACTACGACAACGACCACCACAACAACTACAA
CGACCACCCCTACAACTACAACGGCTACTCCTACAACTACGACGACCACC
CCTTCAACTACAACGACCAAACCGCTACCTGTTTACAGAAATTGTGAACA
TTTTCCAGTTTGTTCAGAACCAGACAAAGTTTTCAGAAACTGCAATCGAT
GTTTCGGAACACCTGGTGATTTTCAATTTATTATGTTTTGGGGGAATAGC
TGTTTTTGCTATAAATTACCACCACAGATCCCGCAACCGTGAATGGTCCT
GATTGATCGATCAAAACTTCTCTTAATGGTGGTTTCGTTTAGCTGCTGGC
AAATCATCAAACCGACAACATCAGCAGCCATTGGTTTAGAAGATGAACTC
ATATCAATGTTCGCTGAAACGACAGAACAGAGTGATTCCATTGTGTTTGT
GTCTTCTGAAAGTGAAACAAACAACAAAAACACAAGCTCCAGTACATTTC
AAGAAACAGTCGAAAGCAAAACCAATAACAGAACAGAAGCGACTTCCTTG
ACAGAATCTGGCGTGTCAGAGAATGAGAATGAACCAGCTACAACAATTCT
AACAGTAACTACACCGATAGTTTCTACAACTCAAATATCTACTACAAATA
ACATTCCAAATGTAGTTAAGAGTAATTCACACACAACTTCGAGCTCATTA
ACATCAACTATTAAAACAACGGAAACGGCCATCCCTCTGACGGCAACGAC
TACCCCTTCTACAACAACAACCGTCCCTACTACGACAACGACTACCCCGA
CAACAACAACAACCACCCCTACAACAACAACGACCACACCTACTACGACA
ACGACCACCCCTACAACTACAACGACCACACTTACTACGACAACGACCAC
CACAACAACTACAACGACCACCCCTACAACTACAACGGCTACTCCTACAA
CTACGACGACCACCCCTTCAACTACAACGACCAAACCGCTACCTGTTTAC
AGAAATTGTGAACATTTTCCAGTTTGTTCAGAACCAGACAAAGTTTTCAG
AAACTGCAATCGATGTTTCGGAACACCTGGTGATTTTCAATTTATTATGT
TTTGGGGGAATAGCTGTTTTTGCTATAAATTACCACCACAGATCCCGCAA
CCGTGAATGGTCCTGATTGATCGATCAAAACTTCTCTTAATGGTGGTTTC
GTTTAGCTGCTGGCAAATCATCAAACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00053351-exon-scaffold_228-1575043694:718089..718122 | TCONS_00053351-exon-scaffold_228-1575043694:718089..718122 | Clytia hemisphaerica | exon |
| TCONS_00053351-exon-scaffold_228-1575043694:715262..715312 | TCONS_00053351-exon-scaffold_228-1575043694:715262..715312 | Clytia hemisphaerica | exon |
| TCONS_00053351-exon-scaffold_228-1575043694:714789..714862 | TCONS_00053351-exon-scaffold_228-1575043694:714789..714862 | Clytia hemisphaerica | exon |
| TCONS_00053351-exon-scaffold_228-1575043694:713374..714265 | TCONS_00053351-exon-scaffold_228-1575043694:713374..714265 | Clytia hemisphaerica | exon |
| TCONS_00053351-exon-scaffold_228-1510915933:718089..718122 | TCONS_00053351-exon-scaffold_228-1510915933:718089..718122 | Clytia hemisphaerica | exon |
| TCONS_00053351-exon-scaffold_228-1510915933:715262..715312 | TCONS_00053351-exon-scaffold_228-1510915933:715262..715312 | Clytia hemisphaerica | exon |
| TCONS_00053351-exon-scaffold_228-1510915933:714789..714862 | TCONS_00053351-exon-scaffold_228-1510915933:714789..714862 | Clytia hemisphaerica | exon |
| TCONS_00053351-exon-scaffold_228-1510915933:713374..714265 | TCONS_00053351-exon-scaffold_228-1510915933:713374..714265 | Clytia hemisphaerica | exon |
| TCONS_00053351-exon-scaffold_228-1491911889:718089..718122 | TCONS_00053351-exon-scaffold_228-1491911889:718089..718122 | Clytia hemisphaerica | exon |
| TCONS_00053351-exon-scaffold_228-1491911889:715262..715312 | TCONS_00053351-exon-scaffold_228-1491911889:715262..715312 | Clytia hemisphaerica | exon |
| TCONS_00053351-exon-scaffold_228-1491911889:714789..714862 | TCONS_00053351-exon-scaffold_228-1491911889:714789..714862 | Clytia hemisphaerica | exon |
| TCONS_00053351-exon-scaffold_228-1491911889:713374..714265 | TCONS_00053351-exon-scaffold_228-1491911889:713374..714265 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:713374..718122 - |
Blast
The following BLAST results are available for this feature:
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