|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053346 ID=TCONS_00053346|Name=TCONS_00053346|organism=Clytia hemisphaerica|type=transcript|length=1686bpRun BLAST on NCBI protein sequence of TCONS_00053346-protein >TCONS_00053346-protein ID=TCONS_00053346-protein|Name=TCONS_00053346-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp MTSAIPRSPSSDALVDERLMKFGWYHGVASRDDSMKHLDGKSPGLYLVRKRun BLAST on NCBI transcript from alignment at scaffold_228:681230..686504- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053346 ID=TCONS_00053346|Name=TCONS_00053346|organism=Clytia hemisphaerica|type=transcript|length=5275bp|location=Sequence derived from alignment at scaffold_228:681230..686504- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_228:681230..686504- >TCONS_00053346 ID=TCONS_00053346|Name=TCONS_00053346|organism=Clytia hemisphaerica|type=CDS|length=7272bp|location=Sequence derived from alignment at scaffold_228:681230..686504- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053346 vs. Swiss-Prot (Human)
Match: CRKL (Crk-like protein OS=Homo sapiens GN=CRKL PE=1 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 1.039e-64 Identity = 124/299 (41.47%), Postives = 166/299 (55.52%), Query Frame = 2
Query: 116 KFGWYHGVASRDDSMKHLDGKSPGLYLVRKRKGTTGEYVLSVSEIQKVCHYIIQDVNGMYFKIGEQRFADIPSIIEFYKKHMLDTTNLIEPALRPGAALDPKLGXXXXXXXXXXXXDIVKVKAKFSFPGKDLEDLPFKKGDFLTIIRKEEDQWWLARDNTGREGMIPVPYVE-VVNTTPTPTRSPSAKSQKGSFKKINNNNYAKPKEIAA-AQPQ------------------IPENHKGPIYATALINREPNVYDEKLLGFKKGDIVEVLKTNDDGLWEGRHTATLKVGYFPFTHVKL 952
+ WY G SR ++ L G+ G++LVR G+YVLSVSE +V HYII + FKIG+Q F +P+++EFYK H LDTT LIEPA R P +GS + N + +++ V+ + FPG D EDLPFKKG+ L II K E+QWW AR+ GR GMIPVPYVE +V ++P G N+N+Y P+ A AQPQ +P GP++A A+ R P YD+ L + GDIV+V + N +G WEG + G FPFTHVK+
Sbjct: 11 RSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPR---YPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSP-----------HGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNG--RKGLFPFTHVKI 293 The following BLAST results are available for this feature:
BLAST of TCONS_00053346 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.