TCONS_00053336 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053336
Unique NameTCONS_00053336
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length999

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053336 ID=TCONS_00053336|Name=TCONS_00053336|organism=Clytia hemisphaerica|type=transcript|length=999bp
GAAATTTGAGAGCATTGAAAACGAATtattagataaaaaattatccGCTC
TCAAAGCACGTATCATTATTTTTGCATTAATTTGGAGATATCTAATTaaa
ctcgtttttttttaaatactaccggGTGCAGATGCCCataatttaataaa
aagtgCAGCTAAGTGACAAGAAACATTAATAATCTAATTTTACAATGGAA
ATCCTTAGAGtaaattaaagcttttttagttcTTGTTACCTTATACCATA
GCACATCGTTTGTAATATCTCTATTTCTAATATTATGTACATATCAGACA
ttattaaataaataaaaagtctttaaaaaatcttaaggAAACAATATATT
ATAAACTATCTGTAAAAAATAACAAACcaaactaaaacaaaagaaaggga
CACTCAAAGATAAACCTATTTAGTTTGGTCTAAAAAGTATAGAGAAATTC
CTAAGGGACCATGCATAAAAATATTTAGAAGGTgacattttcttaaaatt
gaggGCTAACTAGAAAGGCATTTTTTTAGAACCGACGATATCCAACTTCA
ACCATATTTATATGCCATCCAAAAACCaggaatttttgttttattaatgA
CATTACATCATATTAATGGCTTTGATTACTTCATTTTTCAATGGTTACTT
TAATAAACATCTTTTGGTGATTCTAAGGCCATCATTCAGTGGCGAAAGAG
AAAGACATCATTCATGAAACCATTTGTTGCGATGATGTAATGTGAATTAC
AGACGAGGAAGGGAATAAGAAGTATGTCCACTCCAAAGACAACTCGTCCC
AAACAAATTGAATACCATAAAGCATATGTTATTGAGTAATACACATATTT
TTCCCAATCTCTTCTGCATGCCTTTCAGCAATCATTGACCTCAATCCGTC
TAAATCATTCTTGATTTGTGATATCTTTTCAAGTCTTTCTTTTAACTCTT
TGATATTAAGATCAGATTTGGCTTTCTTTTGTTCTTCCCTTGGTGAATC
Run BLAST on NCBI

transcript from alignment at scaffold_228:531726..533637-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053336 ID=TCONS_00053336|Name=TCONS_00053336|organism=Clytia hemisphaerica|type=transcript|length=1912bp|location=Sequence derived from alignment at scaffold_228:531726..533637- (Clytia hemisphaerica)
GAAATTTGAGAGCATTGAAAACGAATTATTAGATAAAAAATTATCCGCTC
TCAAAGCACGTATCATTATTTTTGCATTAATTTGGAGATATCTAATTAAA
CTCGTTTTTTTTTAAATACTACCGGGTGCACCAAAAAATACAGGTTTGTC
GAGATATTGTGAGCTTCAGGATTTAAATTTTTTGTTCATTCTTTTTTTAT
TGTATAGAGGATGCTCTAACTTGAATTTTGAGCTATCATGCATTAAATTT
GAAAAAGTAGTTCGAAAGTTATTTCCAAAAAAATAACATTTTTTCCATGT
CGAAATTTCAAAAAATCGGTAAAGACAGCAATCACGTTATAAATAAAACA
AAATGACAAAAAGACAATTTCATTGTTTTTATTATTCTTTTTCTCTTATC
TTATATTTTGCCAACAGTTTTTCCATATTATTTGCACGTCATAAACATTT
CCAACACCATAGAACTCAATGCAGACCCAAGTTATTTTAGCAACTAGTCG
AGGAATGGTGATCTATTTTTTCAAAAAAATCTCCATATAGCACACACATC
AAAACCTCTCTTGTAGATTTCCAAGAAATTTTCTTCAGCTTTTCCAAAAA
CATATTATACCACATGGGAATAGCTTGTTTTACCATATTCTTAAATTCCG
TTACGAGTTTTGATGAACACAGTTGCTTTTTTTGGTGTTTTTATGTGTAA
AGAAGGTAAGTGTCAAGAGAAAAGTTTGCTCGCTGTTTTTGATGATTTTT
TGAAATTTCGACATTAAAAAAAGTCAGTTTTTTTGAAATAATTTTCGAAT
TGCTTTTTCAAACCTAGTGCATGATAGCTCAAAATTCAAGTTAGAGCATC
CTCTATGCGATAAAAAGAGCATCCTCTATGCGATAAAAAAAGAATGAACA
AAAAATTTAAATCCTGAAGCTCACAATATCTTGACAAAGTTGTATACTTT
TTTTTTGGTGCACCTGGTATACCCATGAAACATTTTGTTTATCATCTAAA
AATTATGTACAAAATTTTTTCGTCTATATAATTAGAAGGTGCAGATGCCC
ATAATTTAATAAAAAGTGCAGCTAAGTGACAAGAAACATTAATAATCTAA
TTTTACAATGGAAATCCTTAGAGTAAATTAAAGCTTTTTTAGTTCTTGTT
ACCTTATACCATAGCACATCGTTTGTAATATCTCTATTTCTAATATTATG
TACATATCAGACATTATTAAATAAATAAAAAGTCTTTAAAAAATCTTAAG
GAAACAATATATTATAAACTATCTGTAAAAAATAACAAACCAAACTAAAA
CAAAAGAAAGGGACACTCAAAGATAAACCTATTTAGTTTGGTCTAAAAAG
TATAGAGAAATTCCTAAGGGACCATGCATAAAAATATTTAGAAGGTGACA
TTTTCTTAAAATTGAGGGCTAACTAGAAAGGCATTTTTTTAGAACCGACG
ATATCCAACTTCAACCATATTTATATGCCATCCAAAAACCAGGAATTTTT
GTTTTATTAATGACATTACATCATATTAATGGCTTTGATTACTTCATTTT
TCAATGGTTACTTTAATAAACATCTTTTGGTGATTCTAAGGCCATCATTC
AGTGGCGAAAGAGAAAGACATCATTCATGAAACCATTTGTTGCGATGATG
TAATGTGAATTACAGACGAGGAAGGGAATAAGAAGTATGTCCACTCCAAA
GACAACTCGTCCCAAACAAATTGAATACCATAAAGCATATGTTATTGAGT
AATACACATATTTTTCCCAATCTCTTCTGCATGCCTTTCAGCAATCATTG
ACCTCAATCCGTCTAAATCATTCTTGATTTGTGATATCTTTTCAAGTCTT
TCTTTTAACTCTTTGATATTAAGATCAGATTTGGCTTTCTTTTGTTCTTC
CCTTGGTGAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033658XLOC_033658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053336-exon-scaffold_228-1575043694:533513..533637TCONS_00053336-exon-scaffold_228-1575043694:533513..533637Clytia hemisphaericaexon
TCONS_00053336-exon-scaffold_228-1575043694:531726..532599TCONS_00053336-exon-scaffold_228-1575043694:531726..532599Clytia hemisphaericaexon
TCONS_00053336-exon-scaffold_228-1510915933:533513..533637TCONS_00053336-exon-scaffold_228-1510915933:533513..533637Clytia hemisphaericaexon
TCONS_00053336-exon-scaffold_228-1510915933:531726..532599TCONS_00053336-exon-scaffold_228-1510915933:531726..532599Clytia hemisphaericaexon
TCONS_00053336-exon-scaffold_228-1491911889:533513..533637TCONS_00053336-exon-scaffold_228-1491911889:533513..533637Clytia hemisphaericaexon
TCONS_00053336-exon-scaffold_228-1491911889:531726..532599TCONS_00053336-exon-scaffold_228-1491911889:531726..532599Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:531726..533637 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0963614	0.11015	0	0	0	0	0	0	0	0	0	0	0	0	0	0.051029	0	0	0	0	0.245751	0.146746	0.126839	0	0	0	0	0	0.105903	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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