TCONS_00053324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053324
Unique NameTCONS_00053324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053324 ID=TCONS_00053324|Name=TCONS_00053324|organism=Clytia hemisphaerica|type=transcript|length=1592bp
AGTTAAACGCTTAGACATTAAACTACGTTTTCAGCAATGCATTTTTTGGt
agcattttgttttttatttggaatttcATCCACAGTTACACAGAGATGTA
AAAGACAGGTTCCCGAGAACAGACATGGAATTCAACCAATAGTCATCACC
AACAAAGCTGAAGCTGTTCAAcaaaataatctcaaaaagACATTACCCAT
TTTATCACCGGAATGGGAGGTCGAATTGAACCTGACAATGAATGCAAATC
ATGTAAACACTGGAATACCAGGAGGGGATTGGTGTTCAGTATTCCATATG
ACAAAAGGCGATGAACTAGGCTCTCATGGCGATCGTACACCGGCAATATA
TCATTATAAGGTTGATGGGAAAATATGGCTTTTTTCATCTGTAGGGAATG
ATTTCGATCATAGCTTCAATCGTCTTATCGAGTTCAATAACCAGTACCAT
ATAAAGATCAGCCAAAGATATAAAAACGGAGGTGTTTACGAGTATTCGAT
TGAAATAAATGGAGAAAAGGTTCACGCTGTGGATAATCTAAAAGCACGAC
AATTTTATGGAGTCAAAGTTTACCTCGGAAACCCATGGAAGACACCGTGT
GTTGCAACGATAAGCTATATGAATATCGTGAATTTCCTGTAGATTTTGAT
CAGAGAATTTTCACGATAGCGTGACAGTACTGActtcaaaggaaaatatt
tttgcgtCAAAAAATTATAGGGTTGCTTGTCATTCTCCATTAGGGGCCAC
CTTTTCTTCTTTATAAGAGGTACTTTACGTGTGTGTCTACAAATTGCCTT
CGTATCTGGCAAAAACATTTTGGCATACAAGTatggaaaatcttttaaat
ttttgagcttTCACTGTCTGTTTATCGATAATCAAAAATTGTACGTCTTT
CTAAGAAAACCATAATATCATAATTTAGCACTTCGTTTGTTAAACCGTCG
AGCGTCTAGAACTCGAATCTGCgcgaggaacacaaatttgttcgagttaa
ggaattttcgagttatggaataaGATTTAAGGCAAATTGTTATTTGAAGC
GACGAgtaaacttgttcgagttaacgAGAAATTAGAGTTAAAGTCTCTAC
CGTACTATAATTTTGCACTTGTTCGTTTGTCGATAAAGGTTCAATTTCGC
TGTACTCTAGCTGAACTTTTTAAAGGTGTGTATTTTACGGATCGGAATAT
AAAAAAAAGCTGAAGGGATATTTAATATTTGACTAGGTTGTGAACATATC
GTACTAAGGGTTTCGAAAACGGTCGTTGAATGATTGAAAACCTATCATTT
TTTTGACGAACATATAATGCAAAAGCAGccgagattttttagaaatatgt
gttcttatcttaagagaccaaatgttatgaccATTAACCATTAAATTTTC
CATACAAAttatgtgttctgatttctatcgccctatttgtctccctaaac
ttatcattactttatggtttgatgtgctctaaaatctaggaaaaacagtt
tgccaagataaacttgtaatatatttgttttgctccacgaaagatgtgtt
atGAAAatttactaggcaacaagattacataaattttctctt
Run BLAST on NCBI

transcript from alignment at scaffold_228:280479..283056-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053324 ID=TCONS_00053324|Name=TCONS_00053324|organism=Clytia hemisphaerica|type=transcript|length=2578bp|location=Sequence derived from alignment at scaffold_228:280479..283056- (Clytia hemisphaerica)
AGTTAAACGCTTAGACATTAAACTACGTTTTCAGCAATGCATTTTTTGGT
AGCATTTTGTTTTTTATTTGGAATTTCATCCACAGTTACACAGAGATGTA
AAAGACAGGTTTGTATCATATAATTTTCAGAATGTTTTTCAAACGGCACA
GGATTTGCTTTCTTTATTAGAACAAAAACCTTCAGAGCTTTAGCGTGTCG
GATGAAAATTTCACCATCTGGCTGGCACACATAAGGCACTATTGTGAGAC
AATATTTTCACGATGTTGTGCCTTTCCCAGCCAAATCATACATAATGGTT
GTGTTGAAATACGCATTAATAATGCTTCTTCTTTCATTTATTCGACATTT
TTGAGTTTTGTTTTTAAAAATATTTCGCAGATAACCCAGCTGCCACACAA
CGTTGTTTCAACGTCAATTTAATGTTCACAACGTCCATTTAACCTTACAT
GAACGTTGAAACAACGTTTTGTGTCAGTTGGGAAGACCTTTCCAAATTTC
CATATTGACAATAATTTCGCGTAAGAATTCAAATCCGCAAAATCCGTCAA
GTTTTATTCCAGGATTAGAGAAAATGATTGCCAGTGATAACTCTTTCCAT
ACCGCACCAGCTAATTTTATGCCTTGAAATACATTTTTTAGTCGCCGTAG
ATTTATTTGAGGACCTTATTCAAAAAAGTGGCATGCTGAAGAGATAGCTT
TTGAAACGAGTTTTCTAACGAACCGGAAAATGAACTAAATTACTTTCGTC
AAAGCCAAGACAATTCACTTCAAAGTTTGCGATTTCAAAAAAATTGTTTT
TTGATTTTTCGGGTATTAAAGAAGTTAAAGAAAATCTTATCTTTATTTTC
TTTTTAAATACAGGTTCCCGAGAACAGACATGGAATTCAACCAATAGTCA
TCACCAACAAAGGTAACATAAAAAGAATCACAAATCCTTGCTGGTCGAGC
GTAAACTTATAAAGTCCATTCGTGAAATTTTTTCCGCACAAAGCATTGTG
GGGAATTCTCGGAGGTCAAATCTGAGTTTTTATATATAGCCGATATCGTC
TATTGCAAAATTTTCAGACATTTCAGTCATTTCAATACTCCAATTTCAAA
TGAATCAATCTAGAGCGTAAAAAAAAAATCTAATCTATTTTAGCTGAAGC
TGTTCAACAAAATAATCTCAAAAAGACATTACCCATTTTATCACCGGAAT
GGGAGGTCGAATTGAACCTGACAATGAATGCAAATCATGTAAACACTGGA
ATACCAGGAGGGGATTGGTGTTCAGTATTCCATATGACAAAAGGCGATGA
ACTAGGCTCTCATGGCGATCGTACACCGGCAATATATCATTATAAGGTTG
ATGGGAAAATATGGCTTTTTTCATCTGTAGGGAATGATTTCGATCATAGC
TTCAATCGTCTTATCGAGTTCAATAACCAGTACCATATAAAGATCAGCCA
AAGATATAAAAACGGAGGTGTTTACGAGTATTCGATTGAAATAAATGGAG
AAAAGGTTCACGCTGTGGATAATCTAAAAGCACGACAATTTTATGGAGTC
AAAGTTTACCTCGGAAACCCATGGAAGACACCGTGTGTTGCAACGATAAG
CTATATGAATATCGTGAATTTCCTGTAGATTTTGATCAGAGAATTTTCAC
GATAGCGTGACAGTACTGACTTCAAAGGAAAATATTTTTGCGTCAAAAAA
TTATAGGGTTGCTTGTCATTCTCCATTAGGGGCCACCTTTTCTTCTTTAT
AAGAGGTACTTTACGTGTGTGTCTACAAATTGCCTTCGTATCTGGCAAAA
ACATTTTGGCATACAAGTATGGAAAATCTTTTAAATTTTTGAGCTTTCAC
TGTCTGTTTATCGATAATCAAAAATTGTACGTCTTTCTAAGAAAACCATA
ATATCATAATTTAGCACTTCGTTTGTTAAACCGTCGAGCGTCTAGAACTC
GAATCTGCGCGAGGAACACAAATTTGTTCGAGTTAAGGAATTTTCGAGTT
ATGGAATAAGATTTAAGGCAAATTGTTATTTGAAGCGACGAGTAAACTTG
TTCGAGTTAACGAGAAATTAGAGTTAAAGTCTCTACCGTACTATAATTTT
GCACTTGTTCGTTTGTCGATAAAGGTTCAATTTCGCTGTACTCTAGCTGA
ACTTTTTAAAGGTGTGTATTTTACGGATCGGAATATAAAAAAAAGCTGAA
GGGATATTTAATATTTGACTAGGTTGTGAACATATCGTACTAAGGGTTTC
GAAAACGGTCGTTGAATGATTGAAAACCTATCATTTTTTTGACGAACATA
TAATGCAAAAGCAGCCGAGATTTTTTAGAAATATGTGTTCTTATCTTAAG
AGACCAAATGTTATGACCATTAACCATTAAATTTTCCATACAAATTATGT
GTTCTGATTTCTATCGCCCTATTTGTCTCCCTAAACTTATCATTACTTTA
TGGTTTGATGTGCTCTAAAATCTAGGAAAAACAGTTTGCCAAGATAAACT
TGTAATATATTTGTTTTGCTCCACGAAAGATGTGTTATGAAAATTTACTA
GGCAACAAGATTACATAAATTTTCTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033652XLOC_033652Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053324-exon-scaffold_228-1575043694:282949..283056TCONS_00053324-exon-scaffold_228-1575043694:282949..283056Clytia hemisphaericaexon
TCONS_00053324-exon-scaffold_228-1575043694:282145..282193TCONS_00053324-exon-scaffold_228-1575043694:282145..282193Clytia hemisphaericaexon
TCONS_00053324-exon-scaffold_228-1575043694:280479..281913TCONS_00053324-exon-scaffold_228-1575043694:280479..281913Clytia hemisphaericaexon
TCONS_00053324-exon-scaffold_228-1510915933:282949..283056TCONS_00053324-exon-scaffold_228-1510915933:282949..283056Clytia hemisphaericaexon
TCONS_00053324-exon-scaffold_228-1510915933:282145..282193TCONS_00053324-exon-scaffold_228-1510915933:282145..282193Clytia hemisphaericaexon
TCONS_00053324-exon-scaffold_228-1510915933:280479..281913TCONS_00053324-exon-scaffold_228-1510915933:280479..281913Clytia hemisphaericaexon
TCONS_00053324-exon-scaffold_228-1491911889:282949..283056TCONS_00053324-exon-scaffold_228-1491911889:282949..283056Clytia hemisphaericaexon
TCONS_00053324-exon-scaffold_228-1491911889:282145..282193TCONS_00053324-exon-scaffold_228-1491911889:282145..282193Clytia hemisphaericaexon
TCONS_00053324-exon-scaffold_228-1491911889:280479..281913TCONS_00053324-exon-scaffold_228-1491911889:280479..281913Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:280479..283056 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.110033	0	0	0	0.18844	0	1.28521	0.000167928	0	0	0.249784	0.382679	2.4861	3.30852	1.52476	1.6641	0	1.54115	0	0	0.000120116	0.10667	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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