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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053324 ID=TCONS_00053324|Name=TCONS_00053324|organism=Clytia hemisphaerica|type=transcript|length=1592bp AGTTAAACGCTTAGACATTAAACTACGTTTTCAGCAATGCATTTTTTGGt agcattttgttttttatttggaatttcATCCACAGTTACACAGAGATGTA AAAGACAGGTTCCCGAGAACAGACATGGAATTCAACCAATAGTCATCACC AACAAAGCTGAAGCTGTTCAAcaaaataatctcaaaaagACATTACCCAT TTTATCACCGGAATGGGAGGTCGAATTGAACCTGACAATGAATGCAAATC ATGTAAACACTGGAATACCAGGAGGGGATTGGTGTTCAGTATTCCATATG ACAAAAGGCGATGAACTAGGCTCTCATGGCGATCGTACACCGGCAATATA TCATTATAAGGTTGATGGGAAAATATGGCTTTTTTCATCTGTAGGGAATG ATTTCGATCATAGCTTCAATCGTCTTATCGAGTTCAATAACCAGTACCAT ATAAAGATCAGCCAAAGATATAAAAACGGAGGTGTTTACGAGTATTCGAT TGAAATAAATGGAGAAAAGGTTCACGCTGTGGATAATCTAAAAGCACGAC AATTTTATGGAGTCAAAGTTTACCTCGGAAACCCATGGAAGACACCGTGT GTTGCAACGATAAGCTATATGAATATCGTGAATTTCCTGTAGATTTTGAT CAGAGAATTTTCACGATAGCGTGACAGTACTGActtcaaaggaaaatatt tttgcgtCAAAAAATTATAGGGTTGCTTGTCATTCTCCATTAGGGGCCAC CTTTTCTTCTTTATAAGAGGTACTTTACGTGTGTGTCTACAAATTGCCTT CGTATCTGGCAAAAACATTTTGGCATACAAGTatggaaaatcttttaaat ttttgagcttTCACTGTCTGTTTATCGATAATCAAAAATTGTACGTCTTT CTAAGAAAACCATAATATCATAATTTAGCACTTCGTTTGTTAAACCGTCG AGCGTCTAGAACTCGAATCTGCgcgaggaacacaaatttgttcgagttaa ggaattttcgagttatggaataaGATTTAAGGCAAATTGTTATTTGAAGC GACGAgtaaacttgttcgagttaacgAGAAATTAGAGTTAAAGTCTCTAC CGTACTATAATTTTGCACTTGTTCGTTTGTCGATAAAGGTTCAATTTCGC TGTACTCTAGCTGAACTTTTTAAAGGTGTGTATTTTACGGATCGGAATAT AAAAAAAAGCTGAAGGGATATTTAATATTTGACTAGGTTGTGAACATATC GTACTAAGGGTTTCGAAAACGGTCGTTGAATGATTGAAAACCTATCATTT TTTTGACGAACATATAATGCAAAAGCAGccgagattttttagaaatatgt gttcttatcttaagagaccaaatgttatgaccATTAACCATTAAATTTTC CATACAAAttatgtgttctgatttctatcgccctatttgtctccctaaac ttatcattactttatggtttgatgtgctctaaaatctaggaaaaacagtt tgccaagataaacttgtaatatatttgttttgctccacgaaagatgtgtt atGAAAatttactaggcaacaagattacataaattttctctt Run BLAST on NCBI transcript from alignment at scaffold_228:280479..283056- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053324 ID=TCONS_00053324|Name=TCONS_00053324|organism=Clytia hemisphaerica|type=transcript|length=2578bp|location=Sequence derived from alignment at scaffold_228:280479..283056- (Clytia hemisphaerica) AGTTAAACGCTTAGACATTAAACTACGTTTTCAGCAATGCATTTTTTGGT
AGCATTTTGTTTTTTATTTGGAATTTCATCCACAGTTACACAGAGATGTA
AAAGACAGGTTTGTATCATATAATTTTCAGAATGTTTTTCAAACGGCACA
GGATTTGCTTTCTTTATTAGAACAAAAACCTTCAGAGCTTTAGCGTGTCG
GATGAAAATTTCACCATCTGGCTGGCACACATAAGGCACTATTGTGAGAC
AATATTTTCACGATGTTGTGCCTTTCCCAGCCAAATCATACATAATGGTT
GTGTTGAAATACGCATTAATAATGCTTCTTCTTTCATTTATTCGACATTT
TTGAGTTTTGTTTTTAAAAATATTTCGCAGATAACCCAGCTGCCACACAA
CGTTGTTTCAACGTCAATTTAATGTTCACAACGTCCATTTAACCTTACAT
GAACGTTGAAACAACGTTTTGTGTCAGTTGGGAAGACCTTTCCAAATTTC
CATATTGACAATAATTTCGCGTAAGAATTCAAATCCGCAAAATCCGTCAA
GTTTTATTCCAGGATTAGAGAAAATGATTGCCAGTGATAACTCTTTCCAT
ACCGCACCAGCTAATTTTATGCCTTGAAATACATTTTTTAGTCGCCGTAG
ATTTATTTGAGGACCTTATTCAAAAAAGTGGCATGCTGAAGAGATAGCTT
TTGAAACGAGTTTTCTAACGAACCGGAAAATGAACTAAATTACTTTCGTC
AAAGCCAAGACAATTCACTTCAAAGTTTGCGATTTCAAAAAAATTGTTTT
TTGATTTTTCGGGTATTAAAGAAGTTAAAGAAAATCTTATCTTTATTTTC
TTTTTAAATACAGGTTCCCGAGAACAGACATGGAATTCAACCAATAGTCA
TCACCAACAAAGGTAACATAAAAAGAATCACAAATCCTTGCTGGTCGAGC
GTAAACTTATAAAGTCCATTCGTGAAATTTTTTCCGCACAAAGCATTGTG
GGGAATTCTCGGAGGTCAAATCTGAGTTTTTATATATAGCCGATATCGTC
TATTGCAAAATTTTCAGACATTTCAGTCATTTCAATACTCCAATTTCAAA
TGAATCAATCTAGAGCGTAAAAAAAAAATCTAATCTATTTTAGCTGAAGC
TGTTCAACAAAATAATCTCAAAAAGACATTACCCATTTTATCACCGGAAT
GGGAGGTCGAATTGAACCTGACAATGAATGCAAATCATGTAAACACTGGA
ATACCAGGAGGGGATTGGTGTTCAGTATTCCATATGACAAAAGGCGATGA
ACTAGGCTCTCATGGCGATCGTACACCGGCAATATATCATTATAAGGTTG
ATGGGAAAATATGGCTTTTTTCATCTGTAGGGAATGATTTCGATCATAGC
TTCAATCGTCTTATCGAGTTCAATAACCAGTACCATATAAAGATCAGCCA
AAGATATAAAAACGGAGGTGTTTACGAGTATTCGATTGAAATAAATGGAG
AAAAGGTTCACGCTGTGGATAATCTAAAAGCACGACAATTTTATGGAGTC
AAAGTTTACCTCGGAAACCCATGGAAGACACCGTGTGTTGCAACGATAAG
CTATATGAATATCGTGAATTTCCTGTAGATTTTGATCAGAGAATTTTCAC
GATAGCGTGACAGTACTGACTTCAAAGGAAAATATTTTTGCGTCAAAAAA
TTATAGGGTTGCTTGTCATTCTCCATTAGGGGCCACCTTTTCTTCTTTAT
AAGAGGTACTTTACGTGTGTGTCTACAAATTGCCTTCGTATCTGGCAAAA
ACATTTTGGCATACAAGTATGGAAAATCTTTTAAATTTTTGAGCTTTCAC
TGTCTGTTTATCGATAATCAAAAATTGTACGTCTTTCTAAGAAAACCATA
ATATCATAATTTAGCACTTCGTTTGTTAAACCGTCGAGCGTCTAGAACTC
GAATCTGCGCGAGGAACACAAATTTGTTCGAGTTAAGGAATTTTCGAGTT
ATGGAATAAGATTTAAGGCAAATTGTTATTTGAAGCGACGAGTAAACTTG
TTCGAGTTAACGAGAAATTAGAGTTAAAGTCTCTACCGTACTATAATTTT
GCACTTGTTCGTTTGTCGATAAAGGTTCAATTTCGCTGTACTCTAGCTGA
ACTTTTTAAAGGTGTGTATTTTACGGATCGGAATATAAAAAAAAGCTGAA
GGGATATTTAATATTTGACTAGGTTGTGAACATATCGTACTAAGGGTTTC
GAAAACGGTCGTTGAATGATTGAAAACCTATCATTTTTTTGACGAACATA
TAATGCAAAAGCAGCCGAGATTTTTTAGAAATATGTGTTCTTATCTTAAG
AGACCAAATGTTATGACCATTAACCATTAAATTTTCCATACAAATTATGT
GTTCTGATTTCTATCGCCCTATTTGTCTCCCTAAACTTATCATTACTTTA
TGGTTTGATGTGCTCTAAAATCTAGGAAAAACAGTTTGCCAAGATAAACT
TGTAATATATTTGTTTTGCTCCACGAAAGATGTGTTATGAAAATTTACTA
GGCAACAAGATTACATAAATTTTCTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00053324-exon-scaffold_228-1575043694:282949..283056 | TCONS_00053324-exon-scaffold_228-1575043694:282949..283056 | Clytia hemisphaerica | exon |
TCONS_00053324-exon-scaffold_228-1575043694:282145..282193 | TCONS_00053324-exon-scaffold_228-1575043694:282145..282193 | Clytia hemisphaerica | exon |
TCONS_00053324-exon-scaffold_228-1575043694:280479..281913 | TCONS_00053324-exon-scaffold_228-1575043694:280479..281913 | Clytia hemisphaerica | exon |
TCONS_00053324-exon-scaffold_228-1510915933:282949..283056 | TCONS_00053324-exon-scaffold_228-1510915933:282949..283056 | Clytia hemisphaerica | exon |
TCONS_00053324-exon-scaffold_228-1510915933:282145..282193 | TCONS_00053324-exon-scaffold_228-1510915933:282145..282193 | Clytia hemisphaerica | exon |
TCONS_00053324-exon-scaffold_228-1510915933:280479..281913 | TCONS_00053324-exon-scaffold_228-1510915933:280479..281913 | Clytia hemisphaerica | exon |
TCONS_00053324-exon-scaffold_228-1491911889:282949..283056 | TCONS_00053324-exon-scaffold_228-1491911889:282949..283056 | Clytia hemisphaerica | exon |
TCONS_00053324-exon-scaffold_228-1491911889:282145..282193 | TCONS_00053324-exon-scaffold_228-1491911889:282145..282193 | Clytia hemisphaerica | exon |
TCONS_00053324-exon-scaffold_228-1491911889:280479..281913 | TCONS_00053324-exon-scaffold_228-1491911889:280479..281913 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_228 | supercontig | scaffold_228:280479..283056 - |
Blast
The following BLAST results are available for this feature:
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