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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053300 ID=TCONS_00053300|Name=TCONS_00053300|organism=Clytia hemisphaerica|type=transcript|length=1236bp
GGCCGAAATATTCATTAAAGAAAGATGATGTGTTATCTCTGACTACGTTC
CACACCACACATCGTTGTCATGGTATCTGAGTTGCTTAGCACCCATTGGT
CAATTGAAACGCATGCACCAATGGAAGagCAAATCGGGAAATGAAAAAGA
GAATTCAAACCTTGGATTATTTTCGTATCCAGTTCTAATGGCTGCTGACA
TCCTTTTGTACAAATCTACACATGTACCAGTTGGTCATGACCAATTACAA
CACATCGAATTAACACGTGATCTCACGAACCTTTTCAATAAACGATACAA
TAACGATGTTTTCCCGTTACCTGAATCGATTTTAACCGATACCGCTCGAA
TTATGAGTTTACGGAAACCACAAGAAAAGATGAGCAAATCGGATAAAATG
GTAAATTCGCGTATCGATTTAACCGATTCTGATGACACGATTGCGTTAAA
AATACGAAAAGCGGTTACCGATTCGAATTCTTTCCTTACTCATGGTTTGA
ATGAGAGACACGGTGTCCGAAATTTGATCGATATTTTAAGCGCATTAACG
GACACTGATAAATCGACTTTAATCGAGAGATATGGAGGAATCGAATATTT
CACTCGAAATTTGAAATCTGATACGACAGATGCTTTAATCGAACATTTAA
AACCGATTCGAAACCGATATGAAGATATAATATCCGATAGAGCTTATTTG
AATGATATTTTAAGGAACGGTTCTGAAAAAGCGAAAGAGATAGCTGAAGA
AACAATGTCAGATGTACATAAAGTTCTAGGTATGTCACTTTGATAACGAT
CTGTAAAGATTAATAGACTATCACTGAACTTGTGATTGTAGAGTTTGAAC
CTTCTGGTTCGATCAGTTATTTTTATTCATTGACAACACTTAAATCTTAG
TTTTTTAtaacaattatttttacaaaaagtgaaaaaaaattgcattttct
gaccattttaattttaaaagtgCTCTTAAATTCTGATTATTTTATTTCAA
CGATAtgatatttgattttccaaTAGTTGGGGGAAGGTTGAATCCAATGT
TTAAATGCTTTGAGTCTAATATTTTCGAACCATAACGCCGATTACCAAgg
aattttaaagttttctatgattaaggcttggggatacgagaagttttttt
cgcgttggtgcaatgcaacatgctccatcccatcTCATCCCGTCTCATAT
CAAGAAGTCAAAAAGGTTACTACTATCTAAATTTTG Run BLAST on NCBI transcript from alignment at scaffold_228:441034..445402+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053300 ID=TCONS_00053300|Name=TCONS_00053300|organism=Clytia hemisphaerica|type=transcript|length=4369bp|location=Sequence derived from alignment at scaffold_228:441034..445402+ (Clytia hemisphaerica)
GGCCGAAATATTCATTAAAGAAAGATGATGTGTTATCTCTGACTACGTAG
TATAATCGACATTTTGCTTGCTCTGATAACAGGGGTTCCACACCAAAGTT
AGGCTAATGCGAAATTAATTATAATTTAAGGTGTCTAAAATTAAAAACAG
CCTTCaaagttaatttttcgatttttttcaacACTTGAACTTACTAGGAC
CCCTTCTATGAATTTTataccatgaaggtaataaagatagatggagagtc
aatgccttttgttctattctgatttatcatcggaagcaaacagctgtttg
gttgctttgggaataagatgatttattttgggtatactcgcgggaatatt
taagatgaatgaaaagacattacatttttaacaagtatattgaaatataa
tagccttgtcatgaaaaattgaaaaaaacttcacataacaagcacaatac
tccaaacttctaggggaagctgcccataaagccatcgacagatttaaaaa
agaattacgtgttacgattagaAACCTTGTATctatcattttgtcagagt
atgaaaaccgctgcccacttagacgtgaagattttaagataagaaacttt
caatgataatgtgatgcgactcTCAATGTTCACAACATGCCAGCCCAAAA
ATATATCCTTATGAAATCAATATATTattcttttatccttaaatCAGTTG
AAGCTATTTCGAATCGAattttaactaagatttctcgcaaaattaagttt
ttcaaaatcaacggaccagcctctttctgttcttataaagttataaattg
atgttttttgcttccaatgatggtacatcaaagaaaagccgctttgaata
gatttataaaagatttcaacgaccatttaggtcattactgagacgttttc
tctccatctgtatTTTTATTACCTTCACGTTTATACCAACATCTTTATAT
TGTTGTCAGGTTCCACACCACACATCGTTGTCATGGTATCTGAGTTGCTT
AGCACCCATTGGTCAATTGAAACGCATGCACCAATGGAAGGTAggggtca
aattttcaagggttTTGCATGTTTTCTGCTTTTCAAATAGTTAAGTTCGA
AAAAGGTAAACAATTGACGCTCTCTAGTTCCACGTTATAGTATTCGATGG
GGCTTCATTATTCGATAACATTTAACCCTATTGGCCCCAACGTTTTTAGA
CTTtcgtatccccaggggggggggtagaatctaccaccctcgattatttt
cgatctagaagagttatggccatgaaatttggtagaGATGTTCACCATCA
Tgatacaatagaccttttttcaaagaggctaccctgttgaataattatgt
agtccagcagaaaaacaatgataaaaccatgcataattataattattaca
atatgcatgatacagtaattatgcatggctctatcattgtttttatggct
ggactacttaattattcaacaggacgtcctctttgaaaaaaggtctattt
tccaggaagaaaaaaaaatttgatgatgtcattcaaaaaccgatgacgtc
atcacaaaatttccacctgtcagaaaaaagcccaaatatatggtttacaa
aagtgtctattacagtcgaaccaataaagatatttagattctgtttgaag
attctgaaaggtaaaagactgttttttaacataattgccggttttgcaat
ttccatgaagattttatcttaaaatctatgctgaagatgagtacaatttt
taaaattcgatgacgtcataaatgatgacaccatcattttcaattttttt
ttttgattttttaaatttgtattatgaATGTCTATCAcccgtgtcaaaat
ttgaaaatgattgaataaattgtttagaagttatcagcattttaaaattt
tgagttttaagcgattttagctgggttttatgtcatgtttcacaaataag
tcataaaacctgatctggaaaACCTGTGACCcttaaattttgcacaagta
ctattaataagattttattaaaagtcagaaagtttcaagtcgtttaaaaa
atttttctccaagatataaacaaaagaactccagcgtggtagattctacc
ccccctggggctaatagggttaaagttGCCGTCAACAAGGAACTCTCGTA
AATGACGCTCTACTATTCCATTCCCTTATGCAATGAAAATCatattcccc
ttgaaaattgcaatagagagcgtcaactgtaatttcTTTGTTGAAATAAG
CGATGATTGCTCGAGAGTCTCTAGACGACTAAATCAACTCCTTTATtact
tcaacatttttttttgtttcagagCAAATCGGGAAATGAAAAAGAGAATT
CAAACCTTGGATTATTTTCGTATCCAGTTCTAATGGCTGCTGACATCCTT
TTGTACAAGTAAGAAGATGTGTTTTTCTACATTATCAGAATTCGCATCGG
GTTTATCAAAGTCGTTTTATTGTTCAGTTTTACTTGTAGCTCTAGGTTTT
TTTGGATATTGTATATTACACAGAATCACTTGTCAATCAGTGGTATATTT
TGATCAGAAATGAATTTACCACaacgcgtttttttataaaaacttaaaag
cttaaaaatgttcttaaattgttcttattttcactagtTCGTGAGAATGT
TTGTGCAATCtcctaagaaattgcatgtttatggacttaaattgttctta
acttgtttttgatgttttggaAATCGAAGACTTCTATTCTCATATGTACT
tatatgcccccccccccagcggtttgcgtgattgcgtgaatgggcatttt
cggttgcgtgaatgcgtgaaaattgaaaaaaaaaatgcgtgattgcgtga
attgaaaaaactgattgcatgaatgcgtgaatgtgggctattttgtgcgt
agGATACacgaattttcccttttttccaccaattatgagcagttttcccg
attttccaatgtttccccgatttttcccaaaaaatttcccgatttctgaa
aaatcgggttgTTGTGTGAAACTTCAGGAAAATTTGCgggaatgcgtgaa
tttcgaaaaaaaattgcgtgattgcgtgaattgagggtccgctggggggg
gggggggctcttttaTGAAGGGACGGAAAAGCGCGTAATACATAAAATAT
TATGTACTATTCCTCCTAATTACAATCaatgacaaaatacttggcacaaa
caaaagggaaattcaacGGGGNAATGAATAATGAAAGTCATAGGCTATAT
AGCGAGCATGTAAAGGTTTAACTACAAAGATAACAATAAAATATGCGATA
AATTATTTGACTGGAATTATCACTAGGATTTGTTTTTGTCTTGTAGATCT
ACACATGTACCAGTTGGTCATGACCAATTACAACACATCGAATTAACACG
TGATCTCACGAACCTTTTCAATAAACGATACAATAACGATGTTTTCCCGT
TACCTGAATCGATTTTAACCGATACCGCTCGAATTATGAGTTTACGGAAA
CCACAAGAAAAGATGAGCAAATCGGATAAAATGGTAAATTCGCGTATCGA
TTTAACCGATTCTGATGACACGATTGCGTTAAAAATACGAAAAGCGGTTA
CCGATTCGAATTCTTTCCTTACTCATGGTTTGAATGAGAGACACGGTGTC
CGAAATTTGATCGATATTTTAAGCGCATTAACGGACACTGATAAATCGAC
TTTAATCGAGAGATATGGAGGAATCGAATATTTCACTCGAAATTTGAAAT
CTGATACGACAGATGCTTTAATCGAACATTTAAAACCGATTCGAAACCGA
TATGAAGATATAATATCCGATAGAGCTTATTTGAATGATATTTTAAGGAA
CGGTTCTGAAAAAGCGAAAGAGATAGCTGAAGAAACAATGTCAGATGTAC
ATAAAGTTCTAGGTATGTCACTTTGATAACGATCTGTAAAGATTAATAGA
CTATCACTGAACTTGTGATTGTAGAGTTTGAACCTTCTGGTTCGATCAGT
TATTTTTATTCATTGACAACACTTAAATCTTAGTTTTTTAtaacaattat
ttttacaaaaagtgaaaaaaaattgcattttctgaccattttaattttaa
aagtgCTCTTAAATTCTGATTATTTTATTTCAACGATAtgatatttgatt
ttccaaTAGTTGGGGGAAGGTTGAATCCAATGTTTAAATGCTTTGAGTCT
AATATTTTCGAACCATAACGCCGATTACCAAggaattttaaagttttcta
tgattaaggcttggggatacgagaagtttttttcgcgttggtgcaatgca
acatgctccatcccatcTCATCCCGTCTCATATCAAGAAGTCAAAAAGGT
TACTACTATCTAAATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053300-exon-scaffold_228-1491911889:441034..441079 | TCONS_00053300-exon-scaffold_228-1491911889:441034..441079 | Clytia hemisphaerica | exon |
| TCONS_00053300-exon-scaffold_228-1510915933:441034..441079 | TCONS_00053300-exon-scaffold_228-1510915933:441034..441079 | Clytia hemisphaerica | exon |
| TCONS_00053300-exon-scaffold_228-1575043694:441034..441079 | TCONS_00053300-exon-scaffold_228-1575043694:441034..441079 | Clytia hemisphaerica | exon |
| TCONS_00053300-exon-scaffold_228-1491911889:441993..442073 | TCONS_00053300-exon-scaffold_228-1491911889:441993..442073 | Clytia hemisphaerica | exon |
| TCONS_00053300-exon-scaffold_228-1510915933:441993..442073 | TCONS_00053300-exon-scaffold_228-1510915933:441993..442073 | Clytia hemisphaerica | exon |
| TCONS_00053300-exon-scaffold_228-1575043694:441993..442073 | TCONS_00053300-exon-scaffold_228-1575043694:441993..442073 | Clytia hemisphaerica | exon |
| TCONS_00053300-exon-scaffold_228-1491911889:443356..443441 | TCONS_00053300-exon-scaffold_228-1491911889:443356..443441 | Clytia hemisphaerica | exon |
| TCONS_00053300-exon-scaffold_228-1510915933:443356..443441 | TCONS_00053300-exon-scaffold_228-1510915933:443356..443441 | Clytia hemisphaerica | exon |
| TCONS_00053300-exon-scaffold_228-1575043694:443356..443441 | TCONS_00053300-exon-scaffold_228-1575043694:443356..443441 | Clytia hemisphaerica | exon |
| TCONS_00053300-exon-scaffold_228-1491911889:444380..445402 | TCONS_00053300-exon-scaffold_228-1491911889:444380..445402 | Clytia hemisphaerica | exon |
| TCONS_00053300-exon-scaffold_228-1510915933:444380..445402 | TCONS_00053300-exon-scaffold_228-1510915933:444380..445402 | Clytia hemisphaerica | exon |
| TCONS_00053300-exon-scaffold_228-1575043694:444380..445402 | TCONS_00053300-exon-scaffold_228-1575043694:444380..445402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:441034..445402 + |
Blast
BLAST of TCONS_00053300 vs. Swiss-Prot (Human)
Match: SYWM (Tryptophan--tRNA ligase, mitochondrial OS=Homo sapiens GN=WARS2 PE=1 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 2.526e-65 Identity = 110/246 (44.72%), Postives = 154/246 (62.60%), Query Frame = 2
Query: 47 VPHHTSLSWYLSCLAPIGQLKRMHQWKSKSGNEKENSNLGLFSYPVLMAADILLYKSTHVPVGHDQLQHIELTRDLTNLFNKRYNNDVFPLPESILTDTARIMSLRKPQEKMSKSDKMVNSRIDLTDSDDTIALKIRKAVTDSNSFLTHGLNERHGVRNLIDILSALTDTDKSTLIERYGGIEYFTRNLKSDTTDALIEHLKPIRNRYEDIISDRAYLNDILRNGSEKAKEIAEETMSDVHKVLGM 784
V HT LSW LSC+ + +L+ +HQWK+K+ +K + +GL +YPVL AADILLYKSTHVPVG DQ+QH+EL +DL FNK+Y + FP+PESILT ++ SLR P KMSKSD + + +TDS + I K RKAVTD S +T+ R GV N++ + +A+T ++ R G+ T K DA+IE PI+ E + D+ +L +L+ GS KAKE+A +V K++G
Sbjct: 117 VSEHTQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYPVLQAADILLYKSTHVPVGEDQVQHMELVQDLAQGFNKKY-GEFFPVPESILTSMKKVKSLRDPSAKMSKSDPDKLATVRITDSPEEIVQKFRKAVTDFTSEVTYDPAGRAGVSNIVAVHAAVTGLSVEEVVRRSAGMN--TARYKLAVADAVIEKFAPIKREIEKLKLDKDHLEKVLQIGSAKAKELAYTVCQEVKKLVGF 359
The following BLAST results are available for this feature:
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