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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053295 ID=TCONS_00053295|Name=TCONS_00053295|organism=Clytia hemisphaerica|type=transcript|length=1658bp
ATCAATGCGGAGCCTGGAATTactaaatttcaagcaatttaggagacaaa
gtagtaaaaattggGTTACAATTACAGTAAATGACAACAAAAGTGTTGGT
GTTTGCATTGTGTGTGTGACGAAACTAAACAATACAAAAGAGTGTAAACA
AGTGGAAGAAAGGAGGCTGCTACCCTTTTAAAATATAATCCATATAAAAG
GACCAAGCATCATTTAAAGATAATCATTTATCATTGATCTGTCAACTGTC
AATTATCAAGGATAAAATTAAACCTGATCTGTCATTATTAACGTTCACGA
AAAATGCGTTATTCAAATACAACCATCGGTTGCTGTGCAGTCGATCAGAA
GCAAACAATCGGTTGCTATGGTGGAGTCGGTGCTGGCAAAGATACAGCGT
CGTTGATACGGTGTACTTACACACGTCGCTTCACCGTCAATATTCAACAG
AAAACTACGTCAAATGATATTTTTCAACTCGATCCGAAAAAAGTACATCA
GAAAGAACGCAAACGTGTTCGCTTTGCAGATGACGAGGGTGGTTTATTAT
GTTCCGTcaaaattttcgaagaaaaGTCGTTCGTCTATCAACCGAGGCTA
CACACGACACCTGCTTTTTCCAAAACGAACTTAACCAATTACAAGACTGT
TTACAACGAGACCAAATTGTCATTAAAGAATGTATGCATGGTAGCTTACG
GTCTCGTCGGCGGCTCTAATTTATTCGGTGCTATTGCCGTACGTAATATT
GCCTTCCGTAAGGACGTTAAAGTACGTATCACGTTAGACGGCTGGAAAAC
GTCATCAGATTTACCTGCAAAGTTTGTTCAACAAGAATTTAACGGACAAA
TAGATCGCTTCTTTTTCATGAAGCCACTCGGCGAACTTGATTTTGATGAT
GTTTGTAATGACATTGAATTTGCTGTATGTTTTACAGTTGATGGTGTTGA
ACACTGGGACAATAACAGTGGACTCAACTATAAATACCAATCATCCAACA
AATGTCTatagtattttttaatgaaatcagTTTTTGTTTGTTATGTCAAG
TTGATTAATTGAACGTTCCCGCCCGTTGAATATTTTCCCGCCTGCTTATT
TAGCAGATGCGCGATTTCGAGGCCGTGTCGTCGCATCGCCGTCTGTAATA
CAAGTTTATTCCGCCAAGTCCCGGAAAAAGATTCCTTTATTCGTTCTTAC
GCTCAAAGTCTTTGTTCTTTAGATAAACTATAACAAATTTATTCAACATT
TATTCCTTTCTTACTGGCTTATGTAGAAatagaaaattcgaaaaaaaaag
gagaaaaacattttcaaagcaTTCATCATCGCACGCAAAAATGTTAATTT
GTAGAAAAAATGGTATAATCGCGCATGCGTTTTCAAATACATTGAATGCT
TTGGAAAAAAGTtattaataatataataatattgtagaaaaaaaaaagaa
agatctaATGAAGGCAATATTCtgaaaatattctcaaaatattcttttaa
aagtaatttAGCCCTGAAATCTTTCAATCTTTCCTTCATTGATTCTTGct
ttgtatattttgtatataatttagcattttttttagtttgtttgAATGGA
GCATTATTTTTCCTCTCTAATATTTTGTTTTAGGGAAGGGAATTCTTTTA
GATTATAG Run BLAST on NCBI transcript from alignment at scaffold_228:386254..388820+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053295 ID=TCONS_00053295|Name=TCONS_00053295|organism=Clytia hemisphaerica|type=transcript|length=2567bp|location=Sequence derived from alignment at scaffold_228:386254..388820+ (Clytia hemisphaerica)
ATCAATGCGGAGCCTGGAATTactaaatttcaagcaatttaggagacaaa
gtagtaaaaattgggtatgaaGCTTAAATAACTCAAtttcaccctataaa
taagaacaggataagaacaatttgaggctcaaagtgccaaaaaaataaga
acagccgagcctcataaaaaatttactggttcttataaagaaatgtgAAG
GTTTTGGATACATAATAATTTTACGATATCGACTTCTTATTCGAAAAATG
TTAAGTAAAATATATGAGGGTAGAGGATTTCAATGTCAatgttttcgcga
attttttgataaatgtaaaaaaccttttgaaaattaatttcgaAATTGTC
CAGTGGGATCTTTTTTCTACAATTCTCCGCAATATAGGAAAAtttgtttg
ctttttgatgCAAACCGCGCCCAATTTGTCGGTATCTTTTGAATAAATAG
TTCGACCCCTCCAGAGACCTTTTACAcgtcaaaaacaaattttgatgtAC
TTTAATTACCCAAAATTAATTAATGATTTGATGATGACAGTTAAttcata
acaaaaaaataaaacatgaaTAAAACATGAAACAGTTAAAATTTGATTGT
TCTTTATAATTACTACTTTTTGTCGTTTattgactgttttttttttatcc
tAAACGATTTACACCATTATAAAATGGTATTTCagcagaaaaaaatgaaa
tcggtCAATCAATTTTAAACGATATCTTGCGAGAGAGGGGGAAGTAAAAG
TTGTGTTATGATATGAGAGTTTACGACGGACGTTTGAggtttctaaagtt
tgtttttcttgTCGCATAATTTTCATTATATCTTTCCCTGGCATGCTTTG
GATGCATGCTTCAATCATGATTAGATTGTTTATGTGTTGTTCTTAAAATT
CATTGCTTGACAAAAAAGCAAGCCTGTTTGTATCGCacataattttaata
ttttgttgtttttcttttctcagGTTACAATTACAGTAAATGACAACAAA
AGTGTTGGTGTTTGCATTGTGTGTGTGACGAAACTAAACAATACAAAAGA
GTGTAAACAAGTGGAAGAAAGGAGGCTGCTACCCTTTTAAAATATAATCC
ATATAAAAGGACCAAGCATCATTTAAAGATAATCATTTATCATTGATCTG
TCAACTGTCAATTATCAAGGATAAAATTAAACCTGATCTGTCATTATTAA
CGTTCACGAAAAATGCGTTATTCAAATACAACCATCGGTTGCTGTGCAGT
CGATCAGAAGCAAACAATCGGTTGCTATGGTGGAGTCGGTGCTGGCAAAG
ATACAGCGTCGTTGATACGGTGTACTTACACACGTCGCTTCACCGTCAAT
ATTCAACAGAAAACTACGTCAAATGATATTTTTCAACTCGATCCGAAAAA
AGTACATCAGAAAGAACGCAAACGTGTTCGCTTTGCAGATGACGAGGGTG
GTTTATTATGTTCCGTcaaaattttcgaagaaaaGTCGTTCGTCTATCAA
CCGAGGCTACACACGACACCTGCTTTTTCCAAAACGAACTTAACCAATTA
CAAGACTGTTTACAACGAGACCAAATTGTCATTAAAGAATGTATGCATGG
TAGCTTACGGTCTCGTCGGCGGCTCTAATTTATTCGGTGCTATTGCCGTA
CGTAATATTGCCTTCCGTAAGGACGTTAAAGTACGTATCACGTTAGACGG
CTGGAAAACGTCATCAGATTTACCTGCAAAGTTTGTTCAACAAGAATTTA
ACGGACAAATAGATCGCTTCTTTTTCATGAAGCCACTCGGCGAACTTGAT
TTTGATGATGTTTGTAATGACATTGAATTTGCTGTATGTTTTACAGTTGA
TGGTGTTGAACACTGGGACAATAACAGTGGACTCAACTATAAATACCAAT
CATCCAACAAATGTCTatagtattttttaatgaaatcagTTTTTGTTTGT
TATGTCAAGTTGATTAATTGAACGTTCCCGCCCGTTGAATATTTTCCCGC
CTGCTTATTTAGCAGATGCGCGATTTCGAGGCCGTGTCGTCGCATCGCCG
TCTGTAATACAAGTTTATTCCGCCAAGTCCCGGAAAAAGATTCCTTTATT
CGTTCTTACGCTCAAAGTCTTTGTTCTTTAGATAAACTATAACAAATTTA
TTCAACATTTATTCCTTTCTTACTGGCTTATGTAGAAatagaaaattcga
aaaaaaaaggagaaaaacattttcaaagcaTTCATCATCGCACGCAAAAA
TGTTAATTTGTAGAAAAAATGGTATAATCGCGCATGCGTTTTCAAATACA
TTGAATGCTTTGGAAAAAAGTtattaataatataataatattgtagaaaa
aaaaaagaaagatctaATGAAGGCAATATTCtgaaaatattctcaaaata
ttcttttaaaagtaatttAGCCCTGAAATCTTTCAATCTTTCCTTCATTG
ATTCTTGctttgtatattttgtatataatttagcattttttttagtttgt
ttgAATGGAGCATTATTTTTCCTCTCTAATATTTTGTTTTAGGGAAGGGA
ATTCTTTTAGATTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053295-exon-scaffold_228-1491911889:386254..386317 | TCONS_00053295-exon-scaffold_228-1491911889:386254..386317 | Clytia hemisphaerica | exon |
| TCONS_00053295-exon-scaffold_228-1510915933:386254..386317 | TCONS_00053295-exon-scaffold_228-1510915933:386254..386317 | Clytia hemisphaerica | exon |
| TCONS_00053295-exon-scaffold_228-1575043694:386254..386317 | TCONS_00053295-exon-scaffold_228-1575043694:386254..386317 | Clytia hemisphaerica | exon |
| TCONS_00053295-exon-scaffold_228-1491911889:387227..388820 | TCONS_00053295-exon-scaffold_228-1491911889:387227..388820 | Clytia hemisphaerica | exon |
| TCONS_00053295-exon-scaffold_228-1510915933:387227..388820 | TCONS_00053295-exon-scaffold_228-1510915933:387227..388820 | Clytia hemisphaerica | exon |
| TCONS_00053295-exon-scaffold_228-1575043694:387227..388820 | TCONS_00053295-exon-scaffold_228-1575043694:387227..388820 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:386254..388820 + |
Blast
The following BLAST results are available for this feature:
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