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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053281 ID=TCONS_00053281|Name=TCONS_00053281|organism=Clytia hemisphaerica|type=transcript|length=3539bpRun BLAST on NCBI protein sequence of TCONS_00053281-protein >TCONS_00053281-protein ID=TCONS_00053281-protein|Name=TCONS_00053281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=528bp MNQNPENIKSSPRRTRQQTRNSPNSKLFNAAWPKPPTNPTKKSHIKTVDHRun BLAST on NCBI transcript from alignment at scaffold_228:238814..253322+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053281 ID=TCONS_00053281|Name=TCONS_00053281|organism=Clytia hemisphaerica|type=transcript|length=14509bp|location=Sequence derived from alignment at scaffold_228:238814..253322+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_228:238814..253322+ >TCONS_00053281 ID=TCONS_00053281|Name=TCONS_00053281|organism=Clytia hemisphaerica|type=CDS|length=15870bp|location=Sequence derived from alignment at scaffold_228:238814..253322+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053281 vs. Swiss-Prot (Human)
Match: TNI3K (Serine/threonine-protein kinase TNNI3K OS=Homo sapiens GN=TNNI3K PE=1 SV=3) HSP 1 Score: 98.9821 bits (245), Expect = 7.489e-21 Identity = 69/201 (34.33%), Postives = 111/201 (55.22%), Query Frame = 2
Query: 2243 VLGTGAWGNVKNGKFRGTDVAVKQIHL-LILSPHNRRLFEREMSIASRCRHPCLVQFIGATNDDGTPLFVME--LLKTDLRSVL--TRNPLSNDECLNIGYDIIRAIVYLHKSKPVPIIHRDISSSNILLYHGENGWRAKLSDYGAANFLRL----SMTRHPGALLYSAPEAST--IDQSTKLDVYSFGVLFCEMCTRELP 2812
++G+G++G V G+ R VA+K+ S + +F RE+SI + HPC++QF+GA +D + ++ + L S+L + L L I D+ + + YLH PIIHRD++S NILLY E+G A ++D+G + FL+ +MT+ PG L + APE T + K DV+S+ + E+ T E+P
Sbjct: 468 IIGSGSFGKVYKGRCRNKIVAIKRYRANTYCSKSDVDMFCREVSILCQLNHPCVIQFVGACLNDPSQFAIVTQYISGGSLFSLLHEQKRILDLQSKLIIAVDVAKGMEYLHNLTQ-PIIHRDLNSHNILLY--EDG-HAVVADFGESRFLQSLDEDNMTKQPGNLRWMAPEVFTQCTRYTIKADVFSYALCLWEILTGEIP 664 The following BLAST results are available for this feature:
BLAST of TCONS_00053281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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