|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053273 ID=TCONS_00053273|Name=TCONS_00053273|organism=Clytia hemisphaerica|type=transcript|length=2110bp
cATGGTTTTTTGGTAAAATGTTTCTTTATGAATATTTCGTCGatGACACC
AAAACTGAAATAACAAACCGTCAAACACATAATGGGCAACTCTAGTGGTA
AAGACAGTGTGCCAATCAAACAAGATATTGATGATGGAGAGGATCTATTG
GACCTGTCTGGCCCTTGCAAAGTGAAAAATATCCATATTGATGGTCTTAA
GAAATCTCGCAATGAATTAGTCACTACAACTTTAGAGGACCTGTTTAAAG
CAAATACCTTTGAAGATGTGATCACCAAAGCTCATTTATGTAAGCTGAAA
TTGGAACGATTGAGAGTTTTTTCGAATATTGATGTTTTCATTGATGTGGC
GGATGAGTATAGTGACCAACATgagtttgatgttttttatcttGTCAAAG
AATCACGAAGTTTTCAAGCCTCCGTTGGTACTACTGTTGGTAATAATGAA
GGTAATATGGTGGTGACCGGAGCTGTTAGTAACCTCAAAGGAACTGGTGA
ATTGGTCAAAGCGAATATCTCTTACGGGACTGCACAGACCACTTCGTATG
AATTCTCAATGGGTAAACCAATCGGCTATGATCCAGACAGGAGATTGTCT
TTTAAAGTATTGAAATCTATTTCTGATTTGAGTCAATCTTTTTACAAAGA
TACGACCAAAGGTCTTGGTCTGGATTTCACTATCCCAAGCTCTATTGGTC
TTCATACTCTTGGATGGGACTTCAATTGGCGTGAAAACAGCGTTTTGCCG
TCAGCTCCATTCGAAGTGCGCGAGTTTTCAGGCCATTCTCTCAAATCAAC
ACTGAAGCATTCGTTTGTCAGCGATGGACGTGACGATTGGGTGTTACCTT
CACACGGACATTTGTTTAAACATTCAATCGAAGTCAGTGACTTTATCGGA
AATGTACGGGCATGGAAAAGTAATGTCGAGTTGCAACTCAATAAAGAAAT
CTTCGACCGAGTTGTGTTGGCGGGCTCCTTCCAAGCTGGCGTTACTCAAT
CGCTTGACGATAAACCGCTTATGATCAATGACCGCTTTTTCATCGGTGGT
CCTTCTTCTATTCGAGGATACAAATTCAAAGGAATCGGATATCAAGCCGA
AGTAGATGGAATTAATTCGGCAGCACTCGGTGGTGACTTATTCTGGATGT
CTGGCCTACATGTCTATACGCCACTTCCGTTTTTGAACTCAGGTAAAGAC
TCTTTCGGATCATTATTCCGAATGCATTATTTTTTGAATGCTGGTAATCT
TACCAATATGAATCAAATGAATGCTAAAGACTTTGTGATGAACCCTAGAT
GGTCTTATGGACTTGGTATAATGTTTATGTTAGGTGGAATGGCTCGTCTA
GAGATCAATTATTGCTTACCTAAGAATGGCAGACCTGGTGATCAGATATC
TGAAGGATTCCAAGTTGGAGTTGGTTTGAATTTCCTTTAATGATTTCCCA
GAAATTATCACTCgtcattttgaccattttgaccattttagCGCTTTTTC
TCTGATGGATTACACCCAAATCGGAGTAGGTTAGAATCTATGTTCAAGAT
TCTGGAAAAAGAGAATACATAATAGATTGCACCTTTACAATCGTCATCGT
TTTGACCATTCTAGctattttatttttctcaacAACAAGTCAAACTTGTC
GATATAGTGCTCAAACTTAgcgtttgttgttttttttgtttagtgTATCA
AGCCCAATGTCGATGCTAACGAAGTCTTTAATGATAGAAAAGTTCATTTA
CTTGCATTTACTTCAACTTTGTCTCTTGAATACGTTGAAATGAAGTTAGG
TCTTTTTCGTGCGagtatattttgaatttaaacttcCCTTATAGTGATCT
CAGAAATTATAAAACTCGTGCTCCGTTCTTCTGATTAGGATGGGTCTAGA
CTTTGAATTTTAATGCCTCTTAGATTAGAAactattttttgttctttttt
atagttcttgtttttttcttaGAGTGAGTACTGTATGCAAgtaattttta
gaattattttgacaatttattatatttttttgaaacaacTAGAAATAAAT
CATAGGCATTTTGTCCTTTCTCTAGAATCACTGTCTtgctttaaaatatt
tatatcCAGC Run BLAST on NCBI transcript from alignment at scaffold_228:173604..185660+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053273 ID=TCONS_00053273|Name=TCONS_00053273|organism=Clytia hemisphaerica|type=transcript|length=12057bp|location=Sequence derived from alignment at scaffold_228:173604..185660+ (Clytia hemisphaerica)
cATGGTTTTTTGGTAAAATGTTTCTTTATGAATATTTCGTCGGTAAGATA
TCTAGCATTTAGTGTTCTAGTTCTAGTAAATTCATATGGTTTCTTggtga
aatgttttttttttatatatgcTTGGTAATCATAtggtgaagtcgggtaa
cttgacTTGCATCAGTTCATCACAGTGTTAGTGACACAGTGGAGACTCTC
agctcaagcaaaaaaatgcacctcaaaacttctaaagggattcaggACCC
TCCTGGCGCTCCGGAAACGTCCAGAGCAAAAAGTGACGTTTTTTTCGTGC
TCCGAAACACCAGAAGATTCCGGAGCAAGATTTTCGGCAATTGATCTGCA
CCGGAACTCCAGAACTGTGTTAAGAATCACTTGCTCCGGAAGCACCAGAA
GAGCTCAGGAACTTTCcggagagaaaaatagtgtttttttagctTCTCCG
GAAAACTCCGgaaacgaccctcgacatggcccgagaattctcgggccaaa
acttttatatattggaattcgcgtaaagcctgAGTATGGCCCGTGCGTGa
cccgagaattcgggccgtgttcgggccacacccgggccacgcacgggcca
cactcgggccaattttaaGAGCGCCGCCCTCTAAAGAGCGCCGCACCTCT
GAGGGGgcgctttttagaaaaaagataaagaaaactGAATTCTatagttt
tcttgttaataaacTCTTCCACATCTAATTATGAAATAAGAATGTTCTTT
AGTGGAAGATAATgtctaaaaatcaaaaggacAGTTGTCAATTTCATGGC
ATGGGTTGTTTCTTGATTTCTTGAGTCTTTAAAAGGTAGGAAATAGAAAA
CTTGAAAAGAGCACCGCCCTCTAAAGAGCGCCGCACCTAAAATTACGAAA
ATTTTAAGAGCGCTGCGGCGCTTAATTGAGGAAATACGGTAACTTAGGAG
TTTACTAGGCTGCTGGCACCCATTACAGTAACGGATTCGATTTGAACGAT
TTGATAACGATTAGAATctagatcaaaacattcgaaagagAATTCGTCAC
TGTAATGTCTTCAATTTTTCTCAATCGAATGCGAGAAGACATGATACCGT
CTATATCGCACCTCGACGTCTTTTGACCAATTAAATCGCTAGAATCTTAC
TGACGCGCtgtcttaatttttcatctttaatcTGCTCTTCCGCAATCGAT
TGAACTCCTCGTTAATCTATAAGAGAAAAGATTTATACGATTCAGTACTT
CGCCCCCACTCCGTACTTAGATTAGACTCAATAGACTCAGCCAGACAGGC
TTAAGAGCGTTATGAAAAAggaggcccgaacatggcccgaatgactcggg
tcatgttcgggccaaaagaattgatagggtctctcggcccgaacatggcc
cgaatgactcgggtcatgttcgggccaaaagaattgatagggtctctcgg
cccgaacatggcccaaAGAGGCccaagaattctcgggccatgtcgagggt
cgtctcCAGAGCGCCGGGAGGGTCTTAGGGattctagcctgggaatccaa
gctcataaccttagaaaaaacaaaaatacctcacctcacaaagttctaag
attatagagcttggtgcaggtcagtgtagacctaactcttcacacaaaaa
ttacgggaaacatatgtttggactttgtaccctatgctgcactcaagcac
tttaagccaaagtcccgcaaaagcgggacaaaaatcagtcttttgaagtt
tgcaaaaaaatgccacatagaagatctttcatagtgtggtcgtgtttgta
ggaaaaaaataatatatagttgaaactttctccagaccttctctatagga
tgcttatgcctcaggaaaaaatcccctaaaattccactggtggaacatcc
cttttttgggcaatttcttttttccccaggcaaaaccctaaggtcaaaat
tttttgaaaatttcaaactctttttgagacaacatcatgtataccattcg
aaagctctcaaaaaactatatagaagacttttaGACGGGTATAGCCGATT
TCATTacctaactcaagataattcacgtagaagatgcaatttttggtcaa
ttttagaccaaaatgtggcgaaaagtggaacttgcgcatgaaatatctca
agTTAGGTAGAAATCGGCCATACCCGTTTGAAAGTCTTCTGTatagtttt
ttgaaattcagccctcgaatttcaggtcggcattcggcagTGCCGACCTA
AAAGCCGACCAAAGAGTGCGTATGGTCGGCAGTTCATTGCCGACCATATT
CATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTATCgcactcaaataaaaaaacaaacattgccgt
agcctttaaacaactttgccgacctaaaatatAGCTCAGATCGGCATTGC
CGACCTAAAAACAAGCTTATCGGCCGGATTTGGACGCCACTTACGTGCCG
ACTTACTTTTACTTGAATTTCGAGGgctggaaattttcaaaatatttcgc
ccttagggttttgcctggggaaaaaagaaattgcccaaaaagggaatgtt
ccaccagtgggattctagggaatttttttcctgaggcataagcatcctat
agagaaagtctggagaaagtttcagctatatattatttttttcctgtaaa
ttatgctaaacgaccccactatcaaattcagtatgtgaatagagcagtaa
aaaatacaatttttctatttttccttttttttgcaaaagttctaggaatg
aaaataaagggataatgatgattgaatactatccattgatgacccgcggc
actatcgtaaagttagaatcgcttcgcatgctcttcgcttgagaaaatga
ttgacagattgaagtttttcacccgcgcaggagttcgcggagcgctctcg
gctcaatcctcggaccccGCTAAAAAtagtagactgagctgtgatacatc
atttcaatggaagttgttggaatgtttacaaggctcttgacagaaaatcg
tttgttttattgtcaatgatgacagtgcggttattaactTTGTTatatct
gacaaattgatgtttgtaagtgcactttatagttttgattcccattgaag
aatcatattctggttttcatgttattagatgctgttttagagctttaggt
ctacactgcagGAAGATTAGTCTGATACAGAAttttataaacagtctgtg
tgtgaacccttgttgacagactttctggaCTTtagaaacccaggcaaaca
cacataatcaacttaccataaaagcagctagttcgaaacgcaggtcacag
gtcacaggtcaacaggtcacaggtcaacaaagtgcagaccggaaaaaaga
taataagatcataacatatacataacataacatcaatacataacgcatta
aattacaaaaaagtaatttagtaatttaaaatgttatttagatattataa
aatgacaattgaataaaaaaagctggtaaaatcgtaatcctcaaaaatcg
aagttccagcctcactgaatgacaatttttgacaaaaatgttgacagaat
cacaaaatatcatgtcttacaagagaaaaacaccaaaaatatttagcata
ccgaatttgatgataacaatatggctggatttaaaattacaccaatcaga
agctcgtgagttctctgagaaggtagttttagagcgatttgttttattat
atgtaaccatcatataacattacaaacattacaatatGTAgtatacctgt
tatacgtataatatggttttaaattttctggtctgcgttatacacggcgc
aaactgcgaaagatcgataaaagcacatggttaaattttgatgtttgaaa
tggttttatatggatgaaattgcttgagaattatgtttttgataattttt
tgtgttttccaaacattttcctctgcaatgacattgattagattcaacct
gtcatcactgacctgtgacctgtgacctgtgacctgcgtttggAACTAGC
CGCCATAAAAGCTCTTTCACATGCTCTAAAGGCTATCAAAACTATTAAAA
ACcgcatcaaaacatcagccacatgtatttagacttccagccaacagcca
ttttgtttcaaaatgaatccatgttttcattttcatttgttttccttttt
tctgcagagtcagctttttccataaattatgcgcatGCATCGCAATTATC
AAAATGCGTGCCAAaatactgctaagtaatacgcacaAAATCTGGCCAAT
CAGACTGAActtgcattgcagggaaaaatctccctgcaggcgcaTGGAAA
ATTCTAGTTGTCATCAACCATCCTGTTGTTTTGTTTCCGCAGAAATTCTA
AGTCCCGAATAGCATGGATattaaatttacagaccaggaTAATCAACCGT
AGTGAAGCAGgttcagtgaagtcaagtttgaagatattctttattagaaa
aacagttaaaagcagtcaaaacgcaatttaccttacctcctgagtttgtc
tttgttatgctaaaatataacaaacctttgtcatgctgtctaattacaaa
aacctccaatcaccACTTCTCCGtcatcttgtttcactttaaatgccgtg
ttttaaaattccttagctacattaaacgtacggaaaaggttttctccagg
ttttttcaatcgcgggattaaactacgagggcggttccgcccgcttattt
ttcttttggcgTTGAGCCCTggggatacttaacaataaaagagattttaa
gattaatgttgaaaagcatatttttcgataaatttaggcaatactcaaca
aaaaataaggtggtttttaaacaaatctttgacaaattggtgtttctttc
tgttctaatatatgcaaatcacgttgaaaaagaatatatttccgccttta
ctttcactttcgctttcgtgttacgcgattccaataggatgaataccgct
cgctaacaaattctgattggctgtaacaggctgtaagtctttagcttcgg
gattctgattggatcatttcccgcgtcacggttgaattttgattggttga
aagtttctgagcgtgagttctgattggatgaatacatgaaaagtaaacaa
tagtatgtaagtattttgcttatcaaaatctaaagaattccagggggttt
tatttactttgcatgacgataattaagcctacaaaacatcgagaaaaaaa
accaacatagaacaggtgtattttgtaatgtagaatatgatagcgtgaat
ctttttgaaattctatgtcaggattttttctcaatgcccNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCcggggtacccgttgctaagaccttatgttaaaaa
cgaaagcgattacggcaaaaagtagcgattttcgtaatacctcaaatatt
gatacttgactgtactgagGTTACCTAATACGACCTCGGTCGGGAAACAT
TTCCCGTTTACGATTAGGAAacgatttgatattttttatcaaaacatatt
CCCTTTGGGATATGCTTTTTAGACTTGatcttcaaatcttcaaatgaaaa
ggaaaattttgagaaaaaggggAAGCTATaaacatagtgtcctccccccc
tttataaagggggggggggcgaaaccaattttccaattttgaatgggggg
gggggggaaaaaaaaaaaaagggcccccccccccctttaaaaattggaaa
attggtttcgccccccccccctttataaagggggggggggcgaaaccaat
tttccaattttgaatgggtgagggggggaatagaaaacaatgtttttagg
caaatttgggccaaaaaatggctaaaaacgggttttttggactttgtgaa
atattggatcattgtttttttcagattattttgcatgaaagtaggtaaaa
gatggctcaagcagatttatgttaaaaaagaatttttcaacccaaaaaaa
cgcatatttatctataagaatcactattaataagcatacattaatgttct
tagccaaattactaaattttttgatgagattgatgttttttttgctcaca
aagtttTGAATATGAATAATTTTGGTTTCGAAACGTTTTTTTAtcagaaa
caaacgactaattttaatagatcgtcactatttgtgttctgaatgattgt
ttaacggtcatgctcacatAGATATctattatatatgtgttaaatgcata
accaggtaggtccataaaagtatcacttgtttctttTGATATAAAGTGCT
TCTTTAACCAATAAAATGTTCCAATTTGATGACGAGTCCAAAATTTCAAC
ATTGTTTTCAATACAGCTCAAGttgtaacttttgatttttgatttcgtGA
GTTTTCTAAGACCATGACGTAATTGTGTTGTGATAAAACTAAATTCAGGG
CAACTATTTAGGTGAATCTGAATGGCAGAATTATGTTTGGGTGTAACGTT
TCTCCATAACTttctttcaagattttgaagtaGGCTATCATAACCTTCTC
CAAAGTAAGTTAATTTAACCCAGATGTTTGATACTTTAGCAGTCTCCTCA
TTAGGTTTTCGTCTTACGTTATTCATAAGAACTTGATGAATAATCGAGTT
ACAGATATGCTTGGGAAGGCCATTCCAAGATGCATATTTGCGTATTTTGT
TGAGTTCATTAGGTAATACGTTATCGGAACAAAGTCTGTTGGCGCGTGTT
ACAAGGCTTCTTATCCAGGATATACGGTATCTCCATGGGGCAAAGCTTTC
AAAATTAATGTATTGGCCAGTATTTGTGTCTTTTCTGAATATGTTTAAAA
CCATCTGGTGTGATTTCTATATTTCGGACTTGCTTTAGTCTTATTTTACT
TGAAGTTATCAGCTGGTCATGGCTTCGTGTAATTTTAGCCTATTCATTTT
TGGTACAATGGataaatgatttaaaaattatcaaaattcatCTAGTCTAA
CATAAAGTATATTTTAAAGGGGCCGTTAAGATAGAGCTTTTCTTACGGTG
TACCAGGTGTGccagaaataagttaccctccttgatttgatattgtaggc
agtagcagaaagatttttcaaagattgttgtttcggaatcattcagagga
aagcctaacttaaaatttggtgtattactcAGGGGGGTACCAAGTTGTGG
TTGTGGACCAGTGCCGAAAAGACCACTTAGTACCCTGGTACTAAGTTGAA
TTTACCACTTAAAGTAGGTATACCACCCCTTAATACCCGGTACAGTCTTG
ATATCACCATTGAAAAACGACATACCACCGTTAAAGTACCCTATACTAAA
CTGATTTTCGCCCtcaaaataggtataccaccctTTAGTTCTTAGTAGTT
TACTTTCTGGTCTTTGGTTTCTGGTACTTTCTGGTACATAtccttaaaat
tttctaaaaagcttTACAACATTGTATTAAAAAACATTCCACACCACTCT
GTACCACCCTTAAtatctcaggaaaaattcctgTCAAGTtaggtactctt
aggtgccaaataaatgCCCCCtgccgcttgttaatttttcgaaaattttc
aaaccccctccggaccttattaggaccccccctgtttattaatttttaag
aatattttcagttggcaaaaagaagtccccttattttgctccaaaaagcc
tgattttagcctatatttaccttatttttgggttttcagaagtacaattt
ccaaccccccagaCTATAAGGTCCCTCCCATTTATTAGAATTTCGAATTT
TCAACCCCCCCttccgtttattcgaaccccctcgccccgtttatttggca
cctaagagtaaagtcattttcaagtcaatttttttttaatcaaaagaaag
tttcaatttgtGAGAGCTACTATGTTCTGAAAACATCCTTCGTGTGCACa
gagttgttaaaagcaaactaacttttttaaatgatcaattaggtccataa
gatcacaaaaacgagGGGTGAGaaaaaatttgaccattttgctggtcccc
atgtgacgtcatcacttttgctggggcttgaaaatgaaagtgaaaatcag
AAGCCcatatatggctcaaatgaaagatatttatccaaggattccaaaaa
atatcacaacatatgcctgaaaatcaatatttcagaAGCTATAAAGATAA
ATAGCtttcaaaatgacgtcaccGATGATGTCATCGATAGtaaaaaaatc
gtcaaattcgaaaaatttttgtttcgtttgaaagaagaccatctagtgaa
caaaaaatattactacaaaaaaatctgaatttctCCTTATAAGCCCCTGT
CAGCAAAtttgtaattcattaaatttgccTGCGAAAGCTTCGGGCACGcc
ctaggctgcacgcatcccctctgatatgatttgatataggggttgcgtat
cgtctaaaatatttctgtctcaacctttttttcatttttcttttttgatt
atgcgtcatagcaatacaatgacttctttttttctttgttcaatgaatga
aaataattatgaaaacaacagcacaatggcttcatttctttctttctttg
attggatgtgatgaaattatgtaaatttatgcaaattttggttaccccaa
atttgagttaactctcggacgagaatttcatacacgatacgcatccccta
taacaaaataaattctggaaATGCGCGAAGCCTAGGCACGCCCAGGAATC
TTTAAaaagcttgagagtcaagtcaaACGTATTTAACAGAATAACTTCCT
ATCAAGTGAAATTCAAGGTTTTccgtagtaatattttttgttcccaagca
ggtcctctttcaaatgaaacaaaagtttttcgatttcgatgattttttaa
ttgccgatgacgtcatcgatgacgtcatttttttagCTATTTTCCTTTAT
AGCTTATCAAactttcatttgagccatatttgagcttctaattttcactt
tcattttcaagccccagcaaaagtgatgacgtcacatgggggccagcaaa
atggtcaaaatttttctcaccactcgtttttatgatcttatagacctaat
tgatcatttaaaaaagtttttttgcttttaacaaGTTTGTGCACACGAAG
AACAGTGTAGCTCTCActttcaaatttgattgaaaagcTTTCTCTTCAAC
TCATTTTCTTGCATATTTTCGTCAAGAGAAagtaaaagaacattttttat
gaggcatcaagttagtatctggtactcaaaatcctgcaaaatcacaaaaa
atgttcttttactTTCTCTTGACtaaaaaatgcaagaaaatgaGTTGAAG
AGAAAGCTTTTCAACTTAGTATCATgtactaagttgttttttacttGCCT
TATCCGACCACCACCTGGCAATGGCCCCCACACACAACTTAATACCAACC
Ccctgtattactttttaattttacttcattgtttcaaaagttgtgttcaa
ttttaaaaatgtcaaagagggtaacttatttctaGCACACTGTTTTGGGT
TTGGTCATAAGAAAGACCTCCCAGCCAGGTCATATCAAAGatcataaaat
tgttcttgatggcatctctttatgtttattGGAATAATCCGCCTGATATG
TGTTAAAACATGATACCATCACAccattttcttttctagatGACACCAAA
ACTGAAATAACAAACCGTCAAACACATAATGGGCAACTCTAGTGGTAAAG
ACAGTGTGCCAATCAAACAAGATATTGATGATGGAGAGGATCTATTGGAC
CTGTCTGGCCCTTGCAAAGTGAAAAATATCCATATTGATGGTCTTAAGAA
ATCTCGCAATGAATTAGTCACTACAACTTTAGAGGACCTGTTTAAAGCAA
ATACCTTTGAAGATGTGATCACCAAAGCTCATTTATGTAAGCTGAAATTG
GAACGATTGAGAGTTTTTTCGAATATTGATGTTTTCATTGATGTGGCGGA
TGAGTATAGTGACCAACATgagtttgatgttttttatcttGTCAAAGAAT
CACGAAGTTTTCAAGCCTCCGTTGGTACTACTGTTGGTAATAATGAAGGT
AATATGGTGGTGACCGGAGCTGTTAGTAACCTCAAAGGAACTGGTGAATT
GGTCAAAGCGAATATCTCTTACGGGACTGCACAGACCACTTCGTATGAAT
TCTCAATGGGTAAACCAATCGGCTATGATCCAGACAGGAGATTGTCTTTT
AAAGTATTGAAATCTATTTCTGATTTGAGTCAATCTTTTTACAAAGATAC
GACCAAAGGTCTTGGTCTGGATTTCACTATCCCAAGCTCTATTGGTCTTC
ATACTCTTGGATGGGACTTCAATTGGCGTGAAAACAGCGTTTTGCCGTCA
GCTCCATTCGAAGTGCGCGAGTTTTCAGGCCATTCTCTCAAATCAACACT
GAAGCATTCGTTTGTCAGCGATGGACGTGACGATTGGGTGTTACCTTCAC
ACGGACATTTGTTTAAACATTCAATCGAAGTCAGTGACTTTATCGGAAAT
GTACGGGCATGGAAAAGTAATGTCGAGTTGCAACTCAATAAAGAAATCTT
CGACCGAGTTGTGTTGGCGGGCTCCTTCCAAGCTGGCGTTACTCAATCGC
TTGACGATAAACCGCTTATGATCAATGACCGCTTTTTCATCGGTGGTCCT
TCTTCTATTCGAGGATACAAATTCAAAGGAATCGGATATCAAGCCGAAGT
AGATGGAATTAATTCGGCAGCACTCGGTGGTGACTTATTCTGGATGTCTG
GCCTACATGTCTATACGCCACTTCCGTTTTTGAACTCAGGTAAAGACTCT
TTCGGATCATTATTCCGAATGCATTATTTTTTGAATGCTGGTAATCTTAC
CAATATGAATCAAATGAATGCTAAAGACTTTGTGATGAACCCTAGATGGT
CTTATGGACTTGGTATAATGTTTATGTTAGGTGGAATGGCTCGTCTAGAG
ATCAATTATTGCTTACCTAAGAATGGCAGACCTGGTGATCAGATATCTGA
AGGATTCCAAGTTGGAGTTGGTTTGAATTTCCTTTAATGATTTCCCAGAA
ATTATCACTCgtcattttgaccattttgaccattttagCGCTTTTTCTCT
GATGGATTACACCCAAATCGGAGTAGGTTAGAATCTATGTTCAAGATTCT
GGAAAAAGAGAATACATAATAGATTGCACCTTTACAATCGTCATCGTTTT
GACCATTCTAGctattttatttttctcaacAACAAGTCAAACTTGTCGAT
ATAGTGCTCAAACTTAgcgtttgttgttttttttgtttagtgTATCAAGC
CCAATGTCGATGCTAACGAAGTCTTTAATGATAGAAAAGTTCATTTACTT
GCATTTACTTCAACTTTGTCTCTTGAATACGTTGAAATGAAGTTAGGTCT
TTTTCGTGCGagtatattttgaatttaaacttcCCTTATAGTGATCTCAG
AAATTATAAAACTCGTGCTCCGTTCTTCTGATTAGGATGGGTCTAGACTT
TGAATTTTAATGCCTCTTAGATTAGAAactattttttgttcttttttata
gttcttgtttttttcttaGAGTGAGTACTGTATGCAAgtaatttttagaa
ttattttgacaatttattatatttttttgaaacaacTAGAAATAAATCAT
AGGCATTTTGTCCTTTCTCTAGAATCACTGTCTtgctttaaaatatttat
atcCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053273-exon-scaffold_228-1491911889:173604..173645 | TCONS_00053273-exon-scaffold_228-1491911889:173604..173645 | Clytia hemisphaerica | exon |
| TCONS_00053273-exon-scaffold_228-1510915933:173604..173645 | TCONS_00053273-exon-scaffold_228-1510915933:173604..173645 | Clytia hemisphaerica | exon |
| TCONS_00053273-exon-scaffold_228-1575043694:173604..173645 | TCONS_00053273-exon-scaffold_228-1575043694:173604..173645 | Clytia hemisphaerica | exon |
| TCONS_00053273-exon-scaffold_228-1491911889:183593..185660 | TCONS_00053273-exon-scaffold_228-1491911889:183593..185660 | Clytia hemisphaerica | exon |
| TCONS_00053273-exon-scaffold_228-1510915933:183593..185660 | TCONS_00053273-exon-scaffold_228-1510915933:183593..185660 | Clytia hemisphaerica | exon |
| TCONS_00053273-exon-scaffold_228-1575043694:183593..185660 | TCONS_00053273-exon-scaffold_228-1575043694:183593..185660 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:173604..185660 + |
Blast
BLAST of TCONS_00053273 vs. Swiss-Prot (Human)
Match: SAM50 (Sorting and assembly machinery component 50 homolog OS=Homo sapiens GN=SAMM50 PE=1 SV=3) HSP 1 Score: 311.612 bits (797), Expect = 2.701e-97 Identity = 178/448 (39.73%), Postives = 260/448 (58.04%), Query Frame = 1
Query: 118 KQDIDDGEDLLDLSGPCKVKNIHIDGLKKSRNELVTTTLEDLFKANTFEDVITKAHLCKLKLERLRVFSNIDVFIDVAD-EYSDQHEFDVFYLVKESRSFQASVGTTVGNNEGNMVVTGAVSNLKGTGELVKANISYGTAQTTSYEFSMGKPIGYDPDRRLSFKVLKSISDLSQSFYKDTTKGLGLDFTIPSSIGLHTLGWDFNWRENSVLP-SAPFEVREFSGHSLKSTLKHSFVSDGRDDWVLPSHGHLFKHSIEVSDFIG-NVRAWKSNVELQLNKEIFDRVVLAGSFQAGVTQSLDDKPLMINDRFFIGGPSSIRGYKFKGIGYQAEVDGINSAALGGDLFWMSGLHVYTPLPFLNSGKDSFGSLFRMHYFLNAGNLTNMN-----QMNAKDFVMNPRWSYGLGIMFMLGGMARLEINYCLPKNGRPGDQISEGFQVGVGLNFL 1437
KQ+I + +D++ V+++H DGL +++++++ + D+FKA +V+ K+H + KL RL +F +DV ID + + + DV + V E R S T VGNNEG+MV+ + NL G E V SYGT +T SY S KP + +R S + K S ++T +G+ +++ P HT+ W+ WRE L +A F VR+ SGHSLKS+L H+ V D R+ +LP G L K + E++ + G +V K + ELQLNK++ V + SF G+ + DKP I DRF++GGP+SIRG+ IG Q+E D LGG+ +W GLH+YTPLPF G+ FG LFR H+FLNAGNL N+N + + + RWSYG GI+ LG +ARLE+NYC+P + GD+I +G Q G G+ FL
Sbjct: 36 KQEILENKDVV-------VQHVHFDGLGRTKDDIIICEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEVTELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKET-SYGLSFFKPRPGNFERNFSVNLYKVTGQFPWSSLRETDRGMSAEYSFPIWKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFDSVFSASFWGGMLVPIGDKPSSIADRFYLGGPTSIRGFSMHSIGPQSEGD-----YLGGEAYWAGGLHLYTPLPF-RPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAGIVLRLGNIARLELNYCVPMGVQTGDRICDGVQFGAGIRFL 469
The following BLAST results are available for this feature:
|
