TCONS_00053257 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053257
Unique NameTCONS_00053257
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053257 ID=TCONS_00053257|Name=TCONS_00053257|organism=Clytia hemisphaerica|type=transcript|length=431bp
CTTTGAATACAATTacaattgatttttctttttatatgtaGATCTTATAA
CCGATTATTACTTTATGctctttttattctattttgtgTTTGGGGCTCGA
GAAACACTTTTGTTACATTCAGTGACAAAAATTCTTACAATGGCAAACGA
TGAATGCTCTGTTTGCTCGAAAAAAATAACGgctaaaacttttcattttt
gtccTAATTGCGAAAGGCGATCTCATGCTAAGTGTCTTGGTGtcgaatca
aaatttttaaggaACATCTGGCTTTGTAAACTTTGCAGGTATGATGCTTT
GCCTAACCTTGATTCTGATGAAAATTTATCCATTGGTAAAGACATAAGTC
ACTTGAAAACCTATTTTAAACACTTAAATTGTATTTCAGatactttttct
aattttgattctcAAATCGATGAACAACGAG
Run BLAST on NCBI

protein sequence of TCONS_00053257-protein

>TCONS_00053257-protein ID=TCONS_00053257-protein|Name=TCONS_00053257-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MLFLFYFVFGARETLLLHSVTKILTMANDECSVCSKKITAKTFHFCPNCE
RRSHAKCLGVESKFLRNIWLCKLCRYDALPNLDSDENLSIGKDISHLKTY
FKHLNCISDTFSNFDSQIDEQR
Run BLAST on NCBI

transcript from alignment at scaffold_227:154754..155184

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053257 ID=TCONS_00053257|Name=TCONS_00053257|organism=Clytia hemisphaerica|type=transcript|length=431bp|location=Sequence derived from alignment at scaffold_227:154754..155184 (Clytia hemisphaerica)
CTCGTTGTTCATCGATTTgagaatcaaaattagaaaaagtatCTGAAATA
CAATTTAAGTGTTTAAAATAGGTTTTCAAGTGACTTATGTCTTTACCAAT
GGATAAATTTTCATCAGAATCAAGGTTAGGCAAAGCATCATACCTGCAAA
GTTTACAAAGCCAGATGTtccttaaaaattttgattcgaCACCAAGACAC
TTAGCATGAGATCGCCTTTCGCAATTAggacaaaaatgaaaagttttagc
CGTTATTTTTTTCGAGCAAACAGAGCATTCATCGTTTGCCATTGTAAGAA
TTTTTGTCACTGAATGTAACAAAAGTGTTTCTCGAGCCCCAAAcacaaaa
tagaataaaaagagCATAAAGTAATAATCGGTTATAAGATCtacatataa
aaagaaaaatcaattgtAATTGTATTCAAAG

Coding sequence (CDS) from alignment at scaffold_227:154754..155184

>TCONS_00053257 ID=TCONS_00053257|Name=TCONS_00053257|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_227:154754..155184 (Clytia hemisphaerica)
TCGTTGTTCATCGATTTgagaatcaaaattagaaaaagtatCTGAAATAC
AATTTAAGTGTTTAAAATAGGTTTTCAAGTGACTTATGTCTTTACCAATG
GATAAATTTTCATCAGAATCAAGGTTAGGCAAAGCATCATACCTGCAAAG
TTTACAAAGCCAGATGTtccttaaaaattttgattcgaCACCAAGACACT
TAGCATGAGATCGCCTTTCGCAATTAggacaaaaatgaaaagttttagcC
GTTATTTTTTTCGAGCAAACAGAGCATTCATCGTTTGCCATTGTAAGAAT
TTTTGTCACTGAATGTAACAAAAGTGTTTCTCGAGCCCCAAAcacaaaat
agaataaaaagagCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033619XLOC_033619Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053257-proteinTCONS_00053257-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053257-exon-scaffold_227-1491911889:154754..155184TCONS_00053257-exon-scaffold_227-1491911889:154754..155184Clytia hemisphaericaexon
TCONS_00053257-exon-scaffold_227-1510915933:154754..155184TCONS_00053257-exon-scaffold_227-1510915933:154754..155184Clytia hemisphaericaexon
TCONS_00053257-exon-scaffold_227-1575043694:154754..155184TCONS_00053257-exon-scaffold_227-1575043694:154754..155184Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_227supercontigscaffold_227:154754..155184 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.799048	0.779198	1.08567	1.77026	2.37063	0.851503	1.23276	1.1541	0.269337	1.16766	0.323817	0.532162	0.743991	0.883019	0.725962	0.973835	0.239937	0.737783	0.339762	0.533305	0.154513	0.226098	0.549704	0.499761	0.686322	1.53132	1.97218	0.233862	0.532129	1.62647
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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